Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,968,566 A→G L287L (TTA→TTG)  wecB → UDP‑N‑acetyl glucosamine ‑2‑epimerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,968,5660AG100.0% 1474.4 / NA 459L287L (TTA→TTG) wecBUDP‑N‑acetyl glucosamine ‑2‑epimerase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (276/183);  total (276/183)

Only 100 of 465 total aligned reads displayed.

GGTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTACCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGT  >  NC_000913/3968476‑3968655
                                                                                          |                                                                                         
 gTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCg                                                                                        >  1:7460284/1‑93 (MQ=255)
   gCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGtt                                                                                      <  2:5473770/93‑1 (MQ=255)
    cATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGttt                                                                                     <  1:1388494/93‑1 (MQ=255)
    cATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGttt                                                                                     <  1:718972/93‑1 (MQ=255)
    cATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGttt                                                                                     <  1:2122451/93‑1 (MQ=255)
     aTCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGGCGTTTg                                                                                    >  1:7761031/1‑93 (MQ=255)
      tctcAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGt                                                                                   >  2:1157786/1‑93 (MQ=255)
       ctcAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTc                                                                                  >  2:5681870/1‑93 (MQ=255)
        tcAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCt                                                                                 >  1:2440321/1‑93 (MQ=255)
         cAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTg                                                                                <  1:5456207/93‑1 (MQ=255)
         cAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTg                                                                                >  2:3385959/1‑93 (MQ=255)
             ccGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCtg                                                                            <  1:1422153/93‑1 (MQ=255)
                aaCGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCtgatg                                                                         <  2:3675827/93‑1 (MQ=255)
                 aCGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCtgatga                                                                        <  2:1468568/93‑1 (MQ=255)
                  cGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGaa                                                                       <  1:6743912/93‑1 (MQ=255)
                   ttCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAAc                                                                      <  2:1812052/92‑1 (MQ=255)
                   gTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAAc                                                                      <  2:4759095/93‑1 (MQ=255)
                    tCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAAcc                                                                     <  1:6844709/93‑1 (MQ=255)
                    tCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAAcc                                                                     <  2:3463172/93‑1 (MQ=255)
                    tCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAAcc                                                                     <  2:4508243/93‑1 (MQ=255)
                     cAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCa                                                                    <  1:817339/93‑1 (MQ=255)
                     cAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCa                                                                    <  2:1955258/93‑1 (MQ=255)
                     cAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCa                                                                    <  1:5016651/93‑1 (MQ=255)
                     cAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCa                                                                    <  1:2251646/93‑1 (MQ=255)
                      agagAACCGGTCAATCGCATTCTGGGTCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCAc                                                                   <  2:1646297/93‑1 (MQ=255)
                        agaACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGc                                                                 <  1:1806724/93‑1 (MQ=255)
                         gaACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGcc                                                                >  1:6022609/1‑93 (MQ=255)
                         gaACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGcc                                                                <  2:4037677/93‑1 (MQ=255)
                           aCCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTg                                                              >  1:7552831/1‑93 (MQ=255)
                            ccGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTgg                                                             >  2:5288519/1‑93 (MQ=255)
                            ccGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTgg                                                             >  1:5108264/1‑93 (MQ=255)
                             cGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGc                                                            >  1:7585648/1‑93 (MQ=255)
                                  aaTCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGAtt                                                       >  2:269277/1‑93 (MQ=255)
                                  aaTCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGAtt                                                       >  1:3141941/1‑93 (MQ=255)
                                  aaTCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCCGGCTGATGAACCACGCCTGGCTGAtt                                                       >  2:6865439/1‑93 (MQ=255)
                                   aTCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGAttt                                                      <  2:251935/93‑1 (MQ=255)
                                      gCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGa                                                   >  1:6690811/1‑93 (MQ=255)
                                      gCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGa                                                   <  2:3135138/93‑1 (MQ=255)
                                      gCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGa                                                   <  1:3524333/93‑1 (MQ=255)
                                        aTTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGAcc                                                 <  1:6495077/93‑1 (MQ=255)
                                        aTTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGAcc                                                 >  2:5789247/1‑93 (MQ=255)
                                         ttCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCg                                                >  1:5608525/1‑93 (MQ=255)
                                         ttCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCg                                                >  2:6919174/1‑93 (MQ=255)
                                         ttCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCg                                                >  2:494987/1‑93 (MQ=255)
                                            tGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACt                                             >  2:1002429/1‑93 (MQ=255)
                                              gggCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCa                                           >  2:4987428/1‑93 (MQ=255)
                                              gggCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCa                                           <  2:7571735/93‑1 (MQ=255)
                                              gggCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCa                                           <  1:3659224/93‑1 (MQ=255)
                                                gCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAgg                                         <  2:4382117/93‑1 (MQ=255)
                                                   tgtgAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAggcgg                                      >  1:5773715/1‑93 (MQ=255)
                                                    gtgAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAggcggc                                     >  2:1297971/1‑93 (MQ=255)
                                                     tgAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCa                                    <  1:3945526/93‑1 (MQ=255)
                                                        aaaaTGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTc                                 <  2:7309615/93‑1 (MQ=255)
                                                        aaaaTGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTc                                 >  2:6277931/1‑93 (MQ=255)
                                                            tGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGga                             >  1:456733/1‑93 (MQ=255)
                                                             gTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTTACCGACTCAGGCGGCATTCAGgaa                            >  2:5202/1‑93 (MQ=255)
                                                             gTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGgaa                            <  2:6190892/93‑1 (MQ=255)
                                                             gTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGgaa                            >  1:4365497/1‑93 (MQ=255)
                                                              tCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAgaaga                           >  2:42231/1‑89 (MQ=255)
                                                               cATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTTTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGgaaga                          <  1:5303033/93‑1 (MQ=255)
                                                                aTTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGgaagaa                         <  2:2329444/93‑1 (MQ=255)
                                                                aTTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGgaagaa                         <  1:5873404/93‑1 (MQ=255)
                                                                 ttCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGaagaag                        <  2:2126176/93‑1 (MQ=255)
                                                                    tGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAgcgc                     >  2:2935031/1‑93 (MQ=255)
                                                                    tGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAgcgc                     <  1:4812009/93‑1 (MQ=255)
                                                                    tGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAgcgc                     >  1:3765244/1‑93 (MQ=255)
                                                                    tGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAgcgc                     >  1:1694287/1‑93 (MQ=255)
                                                                    tGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAgcgc                     >  1:7125008/1‑93 (MQ=255)
                                                                     gatcgatcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAgctct                    >  1:6285889/1‑90 (MQ=255)
                                                                     gatcgatcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGcc                    >  2:7106801/1‑93 (MQ=255)
                                                                     gatcgatcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGcc                    >  1:7378100/1‑93 (MQ=255)
                                                                      atcgatcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCt                   >  1:1959177/1‑93 (MQ=255)
                                                                       tcgatcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCtt                  <  1:4883397/93‑1 (MQ=255)
                                                                        cgatcCTCAGGATTATTTGCAGTTTGTCTGGCTGACGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTc                 <  2:5443144/93‑1 (MQ=255)
                                                                         gatcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCg                >  2:2226600/1‑93 (MQ=255)
                                                                          atcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGc               >  1:7316714/1‑93 (MQ=255)
                                                                          atcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGc               >  2:5924015/1‑93 (MQ=255)
                                                                           tcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCt              >  1:2581248/1‑93 (MQ=255)
                                                                           tcCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCt              >  2:3042311/1‑93 (MQ=255)
                                                                             cccAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTgg            >  2:842944/1‑93 (MQ=255)
                                                                             cccAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTgg            <  2:2821597/93‑1 (MQ=255)
                                                                              ccAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTggg           >  1:898946/1‑93 (MQ=255)
                                                                               cAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTgggg          >  2:3351641/1‑93 (MQ=255)
                                                                               cAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTgggg          >  1:12757/1‑93 (MQ=255)
                                                                                aGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGa         <  2:1376368/93‑1 (MQ=255)
                                                                                aGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGa         <  2:3837996/93‑1 (MQ=255)
                                                                                aGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGa         >  2:6750934/1‑93 (MQ=255)
                                                                                 ggAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGaa        >  2:7521169/1‑93 (MQ=255)
                                                                                 ggAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGaa        >  1:3038214/1‑93 (MQ=255)
                                                                                   aGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAAc      >  1:2861187/1‑93 (MQ=255)
                                                                                   aGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAAc      <  1:4132670/93‑1 (MQ=255)
                                                                                   aGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAAc      <  1:3204028/93‑1 (MQ=255)
                                                                                    gTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAAcc     >  1:1021269/1‑93 (MQ=255)
                                                                                     tATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCt    >  1:4760480/1‑93 (MQ=255)
                                                                                     tATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCt    >  2:6057370/1‑93 (MQ=255)
                                                                                     tATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCt    >  2:1075409/1‑93 (MQ=255)
                                                                                      aTTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCtg   >  2:6626255/1‑93 (MQ=255)
                                                                                      aTTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCtg   <  1:6100118/93‑1 (MQ=255)
                                                                                       tttGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCtgt  >  1:3397250/1‑93 (MQ=255)
                                                                                       tttGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCtgt  >  2:6409190/1‑93 (MQ=255)
                                                                                          |                                                                                         
GGTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTACCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGT  >  NC_000913/3968476‑3968655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 241 total aligned reads displayed.
CGGTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTACCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTGCTG  >  NC_000913/3968475‑3968659
                                                                                           |                                                                                             
CGGTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCC                                                                                             <  SRR4302543.6539602/94‑1 (MQ=60)
CGGTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCC                                                                                             >  SRR4302543.5498448/1‑94 (MQ=60)
CGGTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGGATTTGCC                                                                                             >  SRR4302543.6006278/1‑94 (MQ=60)
 GGTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCG                                                                                            >  SRR4302543.7531747/1‑94 (MQ=60)
  GTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGT                                                                                           <  SRR4302543.3460219/94‑1 (MQ=60)
   TGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGTGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTT                                                                                          <  SRR4302543.5618558/94‑1 (MQ=60)
   TGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTT                                                                                          >  SRR4302543.1284033/1‑94 (MQ=60)
   TGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTT                                                                                          >  SRR4302543.3684649/1‑94 (MQ=60)
    GCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTT                                                                                         <  SRR4302543.993647/94‑1 (MQ=60)
    GCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTT                                                                                         <  SRR4302543.4728505/94‑1 (MQ=60)
    GCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTT                                                                                         <  SRR4302543.1900859/94‑1 (MQ=60)
    GCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTT                                                                                         <  SRR4302543.3971743/94‑1 (MQ=60)
     CATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGGCGTTTG                                                                                        >  SRR4302543.7834274/1‑94 (MQ=60)
     CATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTG                                                                                        <  SRR4302543.1400989/94‑1 (MQ=60)
     CATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTG                                                                                        <  SRR4302543.2141455/94‑1 (MQ=60)
     CATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTG                                                                                        <  SRR4302543.5144584/94‑1 (MQ=60)
     CATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTG                                                                                        <  SRR4302543.7366259/94‑1 (MQ=60)
      ATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGT                                                                                       >  SRR4302543.883084/1‑94 (MQ=60)
       TCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTC                                                                                      >  SRR4302543.3866676/1‑94 (MQ=60)
        CTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCT                                                                                     <  SRR4302543.7799307/94‑1 (MQ=60)
        CTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCT                                                                                     >  SRR4302543.2462322/1‑94 (MQ=60)
         TCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTG                                                                                    >  SRR4302543.1370749/1‑94 (MQ=60)
         TCAACCCAAACGTCAGATAACCGGTCCATCGCATTCTGGGCCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTG                                                                                    <  SRR4302543.1827197/94‑1 (MQ=60)
          CAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGG                                                                                   >  SRR4302543.215534/1‑94 (MQ=60)
             CCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTG                                                                                <  SRR4302543.7420701/94‑1 (MQ=60)
              CCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGA                                                                               >  SRR4302543.5932040/1‑94 (MQ=60)
              CCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGA                                                                               <  SRR4302543.1435023/94‑1 (MQ=60)
              CCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGA                                                                               >  SRR4302543.7801257/1‑94 (MQ=60)
               CGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGAT                                                                              <  SRR4302543.6094107/94‑1 (MQ=60)
                GAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATG                                                                             >  SRR4302543.1415830/1‑94 (MQ=60)
                GAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATG                                                                             <  SRR4302543.1401814/94‑1 (MQ=60)
                 AACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGA                                                                            >  SRR4302543.2819606/1‑94 (MQ=60)
                  ACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAA                                                                           <  SRR4302543.6344936/94‑1 (MQ=60)
                  ACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAA                                                                           <  SRR4302543.7205476/94‑1 (MQ=60)
                   CGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAAC                                                                          <  SRR4302543.6807603/94‑1 (MQ=60)
                   CGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAAC                                                                          >  SRR4302543.2569485/1‑94 (MQ=60)
                   AGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAAC                                                                          <  SRR4302543.6807604/94‑1 (MQ=60)
                    GTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACC                                                                         <  SRR4302543.1742632/94‑1 (MQ=60)
                    GTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACC                                                                         >  SRR4302543.7625599/1‑94 (MQ=60)
                    GTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACC                                                                         >  SRR4302543.3956346/1‑94 (MQ=60)
                    GTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACC                                                                         <  SRR4302543.5551551/94‑1 (MQ=60)
                     TCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCA                                                                        <  SRR4302543.6909298/94‑1 (MQ=60)
                      CAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCAC                                                                       <  SRR4302543.4099353/94‑1 (MQ=60)
                      CAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCAC                                                                       <  SRR4302543.5062294/94‑1 (MQ=60)
                      CAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCAC                                                                       <  SRR4302543.6446326/94‑1 (MQ=60)
                      CAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCAC                                                                       <  SRR4302543.7565752/94‑1 (MQ=60)
                      CAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCAC                                                                       >  SRR4302543.4848205/1‑94 (MQ=60)
                      CAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCAC                                                                       <  SRR4302543.2272115/94‑1 (MQ=60)
                      CAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCAC                                                                       <  SRR4302543.824531/94‑1 (MQ=60)
                       AGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACG                                                                      >  SRR4302543.2211216/1‑94 (MQ=60)
                       AGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACG                                                                      <  SRR4302543.4914137/94‑1 (MQ=60)
                       AGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACG                                                                      >  SRR4302543.755108/1‑94 (MQ=60)
                       AGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACC                                                                      >  SRR4302543.372875/1‑94 (MQ=60)
                       AGAGAACCGGTCAATCGCATTCTGGGGCATGCGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACTACG                                                                      >  SRR4302543.4089323/1‑94 (MQ=60)
                         AGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCC                                                                    >  SRR4302543.6078546/1‑94 (MQ=60)
                         AGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCC                                                                    >  SRR4302543.4319726/1‑94 (MQ=60)
                         AGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCC                                                                    >  SRR4302543.6548422/1‑94 (MQ=60)
                          GAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCT                                                                   <  SRR4302543.4767035/94‑1 (MQ=60)
                          GAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCT                                                                   >  SRR4302543.7364856/1‑94 (MQ=60)
                          GAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCG                                                                   >  SRR4302543.1436165/1‑94 (MQ=60)
                           AACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTG                                                                  >  SRR4302543.4826838/1‑94 (MQ=60)
                           AACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTG                                                                  >  SRR4302543.7624760/1‑94 (MQ=60)
                           AACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTG                                                                  <  SRR4302543.6489402/94‑1 (MQ=60)
                            ACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCTGTTTGTCTGGCTGATGAACCACGCCTGG                                                                 <  SRR4302543.3533015/94‑1 (MQ=60)
                            ACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGG                                                                 <  SRR4302543.2178833/94‑1 (MQ=60)
                            ACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGG                                                                 >  SRR4302543.5154485/1‑94 (MQ=60)
                             CCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGC                                                                <  SRR4302543.4821324/94‑1 (MQ=60)
                             CCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGC                                                                >  SRR4302543.877914/1‑94 (MQ=60)
                             CCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGC                                                                >  SRR4302543.7657739/1‑94 (MQ=60)
                             CCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGC                                                                >  SRR4302543.4832495/1‑94 (MQ=60)
                              CGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCT                                                               >  SRR4302543.5723567/1‑94 (MQ=60)
                              CGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCT                                                               <  SRR4302543.3225844/94‑1 (MQ=60)
                               GGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTG                                                              >  SRR4302543.6627563/1‑94 (MQ=60)
                                  CAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATT                                                           >  SRR4302543.5499691/1‑94 (MQ=60)
                                  CAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATT                                                           >  SRR4302543.1304973/1‑94 (MQ=60)
                                  CAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATT                                                           <  SRR4302543.3199134/94‑1 (MQ=60)
                                  CAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATT                                                           <  SRR4302543.3199133/94‑1 (MQ=60)
                                  CAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATT                                                           >  SRR4302543.3170201/1‑94 (MQ=60)
                                  CAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCACCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATT                                                           >  SRR4302543.5499692/1‑94 (MQ=60)
                                   AATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTT                                                          >  SRR4302543.4493336/1‑94 (MQ=60)
                                   AATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTT                                                          >  SRR4302543.7958131/1‑94 (MQ=60)
                                    ATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTT                                                         >  SRR4302543.562331/1‑94 (MQ=60)
                                      CGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGA                                                       <  SRR4302543.7120160/94‑1 (MQ=60)
                                      CGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGA                                                       >  SRR4302543.2281485/1‑94 (MQ=60)
                                      CGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGA                                                       >  SRR4302543.6753969/1‑94 (MQ=60)
                                       caATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGAC                                                      <  SRR4302543.95246/92‑1 (MQ=60)
                                       GCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGAC                                                      <  SRR4302543.3555760/94‑1 (MQ=60)
                                        CATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACC                                                     >  SRR4302543.172895/1‑94 (MQ=60)
                                        CATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACC                                                     >  SRR4302543.5746527/1‑94 (MQ=60)
                                        CATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACC                                                     <  SRR4302543.4987567/94‑1 (MQ=60)
                                        CATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACC                                                     <  SRR4302543.6102615/94‑1 (MQ=60)
                                        CATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACC                                                     >  SRR4302543.5664329/1‑94 (MQ=60)
                                        CATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACC                                                     >  SRR4302543.7049489/1‑94 (MQ=60)
                                         ATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCG                                                    >  SRR4302543.1788604/1‑94 (MQ=60)
                                         ATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCG                                                    <  SRR4302543.4528091/94‑1 (MQ=60)
                                         ATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCG                                                    <  SRR4302543.6556265/94‑1 (MQ=60)
                                            CTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTTGCTGATGAACCACGCCTGGCTGATTTTGACCGACT                                                 >  SRR4302543.30923/1‑94 (MQ=60)
                                            CTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACT                                                 <  SRR4302543.223363/94‑1 (MQ=60)
                                            CTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACT                                                 >  SRR4302543.210370/1‑94 (MQ=60)
                                             TGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTC                                                >  SRR4302543.4186842/1‑94 (MQ=60)
                                             TGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTC                                                <  SRR4302543.2482531/94‑1 (MQ=60)
                                             TGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTC                                                >  SRR4302543.6653594/1‑94 (MQ=60)
                                              GGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCA                                               >  SRR4302543.968913/1‑94 (MQ=60)
                                               GGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAG                                              <  SRR4302543.2997/94‑1 (MQ=60)
                                               GGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAG                                              >  SRR4302543.5921670/1‑94 (MQ=60)
                                                GGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGG                                             <  SRR4302543.7773930/94‑1 (MQ=60)
                                                 GCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGC                                            <  SRR4302543.7546076/94‑1 (MQ=60)
                                                 GCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGC                                            <  SRR4302543.6091890/94‑1 (MQ=60)
                                                 GCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGC                                            <  SRR4302543.679032/94‑1 (MQ=60)
                                                   ATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGG                                          >  SRR4302543.3104225/1‑94 (MQ=60)
                                                   ATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGG                                          >  SRR4302543.5826272/1‑94 (MQ=60)
                                                    TGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGC                                         >  SRR4302543.7648425/1‑94 (MQ=60)
                                                    TGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGC                                         >  SRR4302543.6767274/1‑94 (MQ=60)
                                                      TGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCAT                                       <  SRR4302543.3980409/94‑1 (MQ=60)
                                                       GAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATT                                      >  SRR4302543.7327734/1‑94 (MQ=60)
                                                        AAAAATGTCATTCTGATCGATCCCCAGGAGGATTTGCCGTTTGTCTGGCTGAGGAACCACGCCCGGCTGTTTTTGccgacttaaggcggaatca                                     >  SRR4302543.2543645/1‑75 (MQ=60)
                                                         AAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCA                                    >  SRR4302543.5120748/1‑94 (MQ=60)
                                                         AAAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCA                                    >  SRR4302543.7889949/1‑94 (MQ=60)
                                                          AAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAG                                   >  SRR4302543.3057852/1‑94 (MQ=60)
                                                          AAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAG                                   >  SRR4302543.597355/1‑94 (MQ=60)
                                                          AAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAG                                   <  SRR4302543.1909166/94‑1 (MQ=60)
                                                          AAATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAG                                   >  SRR4302543.2544345/1‑94 (MQ=60)
                                                          AAATGTCATTCTGATCGATCCCCAGGAGCATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGCCCGACTCAGGCGGCATTCAG                                   >  SRR4302543.2453852/1‑94 (MQ=60)
                                                           AATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGG                                  >  SRR4302543.5158060/1‑94 (MQ=60)
                                                           AATGTCATTCTGATCGATCCCCAGGAGGATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGG                                  >  SRR4302543.7414682/1‑94 (MQ=60)
                                                            ATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGA                                 >  SRR4302543.7216493/1‑94 (MQ=60)
                                                            ATGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGA                                 >  SRR4302543.460983/1‑94 (MQ=60)
                                                             TGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAA                                <  SRR4302543.1769503/94‑1 (MQ=60)
                                                             TGTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAA                                >  SRR4302543.4405041/1‑94 (MQ=60)
                                                              GTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAG                               <  SRR4302543.1454800/94‑1 (MQ=60)
                                                              GTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAG                               >  SRR4302543.5600084/1‑94 (MQ=60)
                                                              GTCATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAG                               <  SRR4302543.1319181/94‑1 (MQ=60)
                                                                CATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTTTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAA                             <  SRR4302543.5350913/94‑1 (MQ=60)
                                                                CATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAA                             >  SRR4302543.3592828/1‑94 (MQ=60)
                                                                CATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAA                             <  SRR4302543.3106057/94‑1 (MQ=60)
                                                                CATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAA                             <  SRR4302543.7465700/94‑1 (MQ=60)
                                                                CATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAA                             <  SRR4302543.5350912/94‑1 (MQ=60)
                                                                 ATTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAG                            <  SRR4302543.5926903/94‑1 (MQ=60)
                                                                  TTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGC                           <  SRR4302543.7312152/94‑1 (MQ=60)
                                                                  TTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGC                           <  SRR4302543.5085294/94‑1 (MQ=60)
                                                                  TTCTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGC                           <  SRR4302543.1648255/94‑1 (MQ=60)
                                                                    CTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGC                         >  SRR4302543.7194232/1‑94 (MQ=60)
                                                                    CTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGC                         >  SRR4302543.5310647/1‑94 (MQ=60)
                                                                    CTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGC                         >  SRR4302543.37644/1‑94 (MQ=60)
                                                                    CTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGC                         >  SRR4302543.1709484/1‑94 (MQ=60)
                                                                    CTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGC                         >  SRR4302543.3798393/1‑94 (MQ=60)
                                                                    CTGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGC                         >  SRR4302543.6717828/1‑94 (MQ=60)
                                                                    CTGATCGATCCCCAGGAGCATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGC                         >  SRR4302543.6893755/1‑94 (MQ=60)
                                                                     TGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCtct                        >  SRR4302543.6345102/1‑91 (MQ=60)
                                                                     TGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCC                        >  SRR4302543.7054777/1‑94 (MQ=60)
                                                                     TGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCC                        <  SRR4302543.4855952/94‑1 (MQ=60)
                                                                     TGATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCC                        >  SRR4302543.7449022/1‑94 (MQ=60)
                                                                      GATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCT                       >  SRR4302543.4027956/1‑94 (MQ=60)
                                                                      GATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCT                       <  SRR4302543.3680378/94‑1 (MQ=60)
                                                                      GATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCT                       >  SRR4302543.1976750/1‑94 (MQ=60)
                                                                       ATCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTT                      >  SRR4302543.2070578/1‑94 (MQ=60)
                                                                        TCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTC                     <  SRR4302543.7450588/94‑1 (MQ=60)
                                                                        TCGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTC                     <  SRR4302543.4927910/94‑1 (MQ=60)
                                                                         CGATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCG                    <  SRR4302543.7654599/94‑1 (MQ=60)
                                                                          GATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGC                   >  SRR4302543.7387211/1‑94 (MQ=60)
                                                                          GATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGC                   >  SRR4302543.2886945/1‑94 (MQ=60)
                                                                          GATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGC                   >  SRR4302543.4954275/1‑94 (MQ=60)
                                                                           ATCCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCT                  >  SRR4302543.2604747/1‑94 (MQ=60)
                                                                             CCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGG                <  SRR4302543.1031011/94‑1 (MQ=60)
                                                                             CCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGG                >  SRR4302543.3303500/1‑94 (MQ=60)
                                                                             CCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGG                >  SRR4302543.3238015/1‑94 (MQ=60)
                                                                             CCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGG                <  SRR4302543.6305110/94‑1 (MQ=60)
                                                                             CCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGG                <  SRR4302543.2807538/94‑1 (MQ=60)
                                                                             CCCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGG                >  SRR4302543.2050195/1‑94 (MQ=60)
                                                                              CCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGG               >  SRR4302543.3584909/1‑94 (MQ=60)
                                                                              CCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGG               <  SRR4302543.7500273/94‑1 (MQ=60)
                                                                              CCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGG               >  SRR4302543.906882/1‑94 (MQ=60)
                                                                              CCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGG               <  SRR4302543.6324885/94‑1 (MQ=60)
                                                                              CCCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGG               >  SRR4302543.6812177/1‑94 (MQ=60)
                                                                               CCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGG              >  SRR4302543.12867/1‑94 (MQ=60)
                                                                               CCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGG              <  SRR4302543.1277785/94‑1 (MQ=60)
                                                                               CCAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGG              >  SRR4302543.3446123/1‑94 (MQ=60)
                                                                                CAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGA             <  SRR4302543.492443/94‑1 (MQ=60)
                                                                                CAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGA             >  SRR4302543.4638029/1‑94 (MQ=60)
                                                                                CAGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGA             >  SRR4302543.7253655/1‑94 (MQ=60)
                                                                                 AGGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAA            >  SRR4302543.3131642/1‑94 (MQ=60)
                                                                                  GGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAA           >  SRR4302543.3721892/1‑94 (MQ=60)
                                                                                  GGAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAA           >  SRR4302543.5916364/1‑94 (MQ=60)
                                                                                   GAGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAAC          >  SRR4302543.2887282/1‑94 (MQ=60)
                                                                                    AGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACC         >  SRR4302543.1030305/1‑94 (MQ=60)
                                                                                    AGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACC         <  SRR4302543.4169954/94‑1 (MQ=60)
                                                                                    AGTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACC         <  SRR4302543.3232933/94‑1 (MQ=60)
                                                                                     GTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCT        <  SRR4302543.4859447/94‑1 (MQ=60)
                                                                                     GTATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCT        >  SRR4302543.7847296/1‑94 (MQ=60)
                                                                                      TATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTG       <  SRR4302543.4427829/94‑1 (MQ=60)
                                                                                       ATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGT      >  SRR4302543.3427697/1‑94 (MQ=60)
                                                                                       ATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGT      <  SRR4302543.6157913/94‑1 (MQ=60)
                                                                                       ATTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGT      >  SRR4302543.5737590/1‑94 (MQ=60)
                                                                                        TTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTG     >  SRR4302543.3823359/1‑94 (MQ=60)
                                                                                        TTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTG     >  SRR4302543.4967441/1‑94 (MQ=60)
                                                                                        TTTGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTG     >  SRR4302543.4698218/1‑94 (MQ=60)
                                                                                          TGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTGCT   <  SRR4302543.4925454/94‑1 (MQ=60)
                                                                                          TGCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTGCT   >  SRR4302543.6955125/1‑94 (MQ=60)
                                                                                           GCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTGCTG  <  SRR4302543.1885330/94‑1 (MQ=60)
                                                                                           GCCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTGCTG  >  SRR4302543.3015218/1‑94 (MQ=60)
                                                                                           |                                                                                             
CGGTGCATCTCAACCCGAACGTCAGAGAACCGGTCAATCGCATTCTGGGGCATGTGAAAAATGTCATTCTGATCGATCCCCAGGAGTATTTACCGTTTGTCTGGCTGATGAACCACGCCTGGCTGATTTTGACCGACTCAGGCGGCATTCAGGAAGAAGCGCCTTCGCTGGGGAAACCTGTGCTG  >  NC_000913/3968475‑3968659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑