Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,026,252 2 bp→GC coding (110‑111/1164 nt) fadA ← thiolase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,026,2520CG100.0% 1095.7 / NA 352T37S (ACG→AGC) fadAthiolase I
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (153/199);  total (153/199)
*NC_0009134,026,2530GC100.0% 1101.2 / NA 354T37S (ACG→AGC) fadAthiolase I
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (153/201);  total (153/201)

Only 100 of 369 total aligned reads displayed.

AAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCA  >  NC_000913/4026165‑4026339
                                                                                       ||                                                                                      
   aCCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCAt                                                                                 >  1:508867/1‑93 (MQ=255)
    cccTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCAtt                                                                                >  1:4383358/1‑93 (MQ=255)
     ccTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTa                                                                               >  2:3480130/1‑93 (MQ=255)
      cTGCTCCAGCGTCTGCTGCACACACCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa                                                                              <  2:4312503/93‑1 (MQ=255)
      cTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa                                                                              >  2:1024785/1‑93 (MQ=255)
      cTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa                                                                              >  1:3007973/1‑93 (MQ=255)
      cTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGAGCCAGCAGGCTACGCATTaa                                                                              >  2:4764722/1‑93 (MQ=255)
       tGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaaa                                                                             <  1:6980637/93‑1 (MQ=255)
       tGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaaa                                                                             >  2:1595773/1‑93 (MQ=255)
        gCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAt                                                                            >  2:5802819/1‑93 (MQ=255)
         cTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATg                                                                           <  2:849921/93‑1 (MQ=255)
          tCCAGCTTCTGCTGCACACGACCCCATTAAATAGCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa                                                                          <  2:4204362/93‑1 (MQ=255)
          tCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGGCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa                                                                          >  2:5253632/1‑93 (MQ=255)
          tCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa                                                                          <  1:5867024/93‑1 (MQ=255)
          tCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa                                                                          >  1:3815647/1‑93 (MQ=255)
          cccAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa                                                                          <  1:6943255/92‑1 (MQ=255)
          cccAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa                                                                          <  2:1783448/92‑1 (MQ=255)
           ccAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAg                                                                         >  1:4289479/1‑93 (MQ=255)
           ccAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAg                                                                         >  2:2044986/1‑93 (MQ=255)
            cAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGc                                                                        <  1:3544149/93‑1 (MQ=255)
             aGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCg                                                                       >  2:7865258/1‑93 (MQ=255)
              gCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCgg                                                                      >  1:5749926/1‑93 (MQ=255)
               cGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGga                                                                     <  1:2286842/93‑1 (MQ=255)
               cGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGga                                                                     <  2:5425717/93‑1 (MQ=255)
               cGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGga                                                                     <  1:5339332/93‑1 (MQ=255)
                gcctgctgCACTCAACCCCAGTAAATCGCGTCGAGGCCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgag                                                                    <  2:7645543/91‑1 (MQ=255)
                gTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgag                                                                    >  2:5524023/1‑93 (MQ=255)
                 tCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgaga                                                                   >  1:7564697/1‑93 (MQ=255)
                 tCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgaga                                                                   <  2:6841913/93‑1 (MQ=255)
                 tCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgaga                                                                   <  2:589757/93‑1 (MQ=255)
                   tgctgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgagaga                                                                 <  1:4019890/93‑1 (MQ=255)
                   tgctgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgagaga                                                                 >  1:2657669/1‑93 (MQ=255)
                    gctgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAt                                                                <  2:4585537/93‑1 (MQ=255)
                    gctgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAt                                                                <  1:6014355/93‑1 (MQ=255)
                      tgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtct                                                              <  2:507610/93‑1 (MQ=255)
                      tgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtct                                                              >  1:1025212/1‑93 (MQ=255)
                      tgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtct                                                              <  1:274834/93‑1 (MQ=255)
                       gcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtctt                                                             <  1:3496431/93‑1 (MQ=255)
                       gcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtctt                                                             >  1:1763618/1‑93 (MQ=255)
                        cacacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtcttc                                                            <  2:5643413/93‑1 (MQ=255)
                         acacacCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtcttct                                                           <  1:4169560/93‑1 (MQ=255)
                         acacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtcttct                                                           <  1:2044422/93‑1 (MQ=255)
                         acacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtcttct                                                           <  1:1719991/93‑1 (MQ=255)
                          cacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTg                                                          <  1:640013/93‑1 (MQ=255)
                           acaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgc                                                         >  1:4681684/1‑93 (MQ=255)
                            caACCCCAGTAAATATCGTCGAGGGCCGCCGCCTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgca                                                        <  2:6409876/93‑1 (MQ=255)
                               ccccAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacgc                                                     >  2:559828/1‑93 (MQ=255)
                                cccAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacgca                                                    >  2:2642892/1‑93 (MQ=255)
                                cccAGTAAATAACGTCGAGGGCCGCCACTTCCAGCGCCGAGTTACGCGCCAGCAGGCTACGCATTAAATGAACGGAGAGATCTTCTgcacgca                                                    <  2:7019854/93‑1 (MQ=255)
                                  cAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGcacgcacg                                                  >  2:1302262/1‑93 (MQ=255)
                                     tAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTa                                               >  1:2243324/1‑93 (MQ=255)
                                     tAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTa                                               <  2:4665839/93‑1 (MQ=255)
                                      aaaTATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTAc                                              >  2:6712022/1‑93 (MQ=255)
                                      aaaTATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTAc                                              >  2:463596/1‑93 (MQ=255)
                                       aaTATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACg                                             >  2:3620325/1‑93 (MQ=255)
                                        atatCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGa                                            >  1:3693075/1‑93 (MQ=255)
                                             gtcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGc                                       <  2:2570948/93‑1 (MQ=255)
                                             gtcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGc                                       >  1:3178982/1‑93 (MQ=255)
                                              tcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCa                                      <  2:1681476/93‑1 (MQ=255)
                                              tcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCa                                      >  1:4953580/1‑93 (MQ=255)
                                               cgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAc                                     <  2:4083503/93‑1 (MQ=255)
                                                gAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAcc                                    >  2:2243834/1‑93 (MQ=255)
                                                 aGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCg                                   >  2:117237/1‑93 (MQ=255)
                                                  gggCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGc                                  >  1:5245748/1‑93 (MQ=255)
                                                   ggCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGcc                                 >  1:1837904/1‑93 (MQ=255)
                                                     ccgccgCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCt                               <  1:5459665/93‑1 (MQ=255)
                                                      cgccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCtt                              <  1:2443385/93‑1 (MQ=255)
                                                      cgccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCtt                              <  1:3896527/93‑1 (MQ=255)
                                                      cgccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCtt                              >  1:7119429/1‑93 (MQ=255)
                                                       gccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTc                             <  1:6613624/93‑1 (MQ=255)
                                                        ccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCg                            >  2:6808052/1‑93 (MQ=255)
                                                        ccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCg                            >  2:7429675/1‑93 (MQ=255)
                                                        ccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCg                            >  2:5340332/1‑93 (MQ=255)
                                                           cTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAAc                         <  1:1259224/93‑1 (MQ=255)
                                                            ttCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACg                        <  2:7055556/93‑1 (MQ=255)
                                                             tCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCAGGCACGTTACGAAAAGCACCGCCCTTCGAACgg                       >  1:7583617/1‑93 (MQ=255)
                                                             tCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACgg                       >  1:837224/1‑93 (MQ=255)
                                                               cAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGcc                     <  2:4892632/93‑1 (MQ=255)
                                                                aGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGccc                    <  2:6520780/93‑1 (MQ=255)
                                                                 gcgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCa                   <  1:7694751/93‑1 (MQ=255)
                                                                 gcgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCa                   <  1:4412847/93‑1 (MQ=255)
                                                                  cgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt                  >  1:7306488/1‑93 (MQ=255)
                                                                  cgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt                  >  1:6140789/1‑93 (MQ=255)
                                                                  cgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt                  <  1:5401930/93‑1 (MQ=255)
                                                                  cgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt                  <  2:7178994/93‑1 (MQ=255)
                                                                   gcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATc                 >  1:3258430/1‑93 (MQ=255)
                                                                      gggTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCggg              <  2:2749116/93‑1 (MQ=255)
                                                                      gggTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCggg              <  1:1552649/93‑1 (MQ=255)
                                                                      gggTTACGCGCCACCAGGTTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCggg              <  2:5988723/93‑1 (MQ=255)
                                                                       ggTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCgggg             <  2:3252983/93‑1 (MQ=255)
                                                                       ggTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCgggg             >  2:3965539/1‑93 (MQ=255)
                                                                        gTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCggggc            >  1:5632780/1‑92 (MQ=255)
                                                                        gTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGt            >  2:3061110/1‑93 (MQ=255)
                                                                        gTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGt            <  1:3074600/93‑1 (MQ=255)
                                                                        gTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGAACCGCCCTTCGAACGGCCCATCGGGGt            >  1:1125535/1‑93 (MQ=255)
                                                                           aCGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCg         >  1:4525479/1‑93 (MQ=255)
                                                                           aCGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCg         <  1:1622471/93‑1 (MQ=255)
                                                                           aCGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCg         <  1:4721890/93‑1 (MQ=255)
                                                                             gcgcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGaa       <  2:776375/93‑1 (MQ=255)
                                                                                 cagcagGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGc   <  2:1447811/93‑1 (MQ=255)
                                                                                       ||                                                                                      
AAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCA  >  NC_000913/4026165‑4026339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 208 total aligned reads displayed.
GATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATC  >  NC_000913/4026159‑4026341
                                                                                             |                                                                                         
GATATTAAAACCCTGCTCCAGCGTCTTCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGG                                                                                           >  SRR4302543.5731333/1‑94 (MQ=60)
GATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGG                                                                                           <  SRR4302543.6627927/94‑1 (MQ=60)
     TAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACG                                                                                      <  SRR4302543.6777510/94‑1 (MQ=60)
     TAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACG                                                                                      >  SRR4302543.5119646/1‑94 (MQ=60)
     TAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACG                                                                                      >  SRR4302543.3436220/1‑94 (MQ=60)
      AAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGC                                                                                     >  SRR4302543.5359926/1‑94 (MQ=60)
      AAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGC                                                                                     <  SRR4302543.654952/94‑1 (MQ=60)
       AAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCA                                                                                    <  SRR4302543.4810075/94‑1 (MQ=60)
        AACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCAT                                                                                   <  SRR4302543.2398615/94‑1 (MQ=60)
        AACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCAT                                                                                   >  SRR4302543.4423221/1‑94 (MQ=60)
        AACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCAT                                                                                   >  SRR4302543.513598/1‑94 (MQ=60)
        AACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGCAT                                                                                   >  SRR4302543.6994958/1‑94 (MQ=60)
         ACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATT                                                                                  >  SRR4302543.4423098/1‑94 (MQ=60)
          CCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTA                                                                                 <  SRR4302543.6764316/94‑1 (MQ=60)
           CCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAA                                                                                >  SRR4302543.3035219/1‑94 (MQ=60)
           CCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGCTACGCGCCAGCAGGCTACGCATTAA                                                                                >  SRR4302543.4070443/1‑94 (MQ=60)
            CTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAA                                                                               >  SRR4302543.3166928/1‑94 (MQ=60)
             TGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAT                                                                              <  SRR4302543.7046332/94‑1 (MQ=60)
             TGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAT                                                                              <  SRR4302543.4432075/94‑1 (MQ=60)
             TGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAT                                                                              >  SRR4302543.256682/1‑94 (MQ=60)
               CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGA                                                                            >  SRR4302543.5851926/1‑94 (MQ=60)
               CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGA                                                                            <  SRR4302543.539777/94‑1 (MQ=60)
               CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGA                                                                            >  SRR4302543.2225195/1‑94 (MQ=60)
               CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGA                                                                            >  SRR4302543.5317114/1‑94 (MQ=60)
               CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGA                                                                            >  SRR4302543.3849285/1‑94 (MQ=60)
               CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGACGCTTCCACCGCCGGGTTACGCGCCAGCACGCTACGCATTAAATGA                                                                            >  SRR4302543.3277697/1‑94 (MQ=60)
                TCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCCTTAAATGAG                                                                           >  SRR4302543.1745142/1‑94 (MQ=60)
                TCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG                                                                           <  SRR4302543.506202/94‑1 (MQ=60)
                TCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG                                                                           >  SRR4302543.4328476/1‑94 (MQ=60)
                TCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG                                                                           <  SRR4302543.5920431/94‑1 (MQ=60)
                TCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG                                                                           <  SRR4302543.5540346/94‑1 (MQ=60)
                TCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG                                                                           <  SRR4302543.7045832/94‑1 (MQ=60)
                TCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTAAGCGCCAGCAGGCTACGCATTAAATGAG                                                                           >  SRR4302543.1745141/1‑94 (MQ=60)
                TCCAGCGTCTGCTGCAAACAACCCCAGTAAATATAGTCGAGGGCCGCCGCGTCCCGCGCCGGGTTACGCGCCAGCAGGCTACGCGTTTAATGAG                                                                           >  SRR4302543.3825170/1‑94 (MQ=60)
                CCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG                                                                           <  SRR4302543.7008581/94‑1 (MQ=60)
                 CCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGC                                                                          <  SRR4302543.4341019/94‑1 (MQ=60)
                 CCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGC                                                                          <  SRR4302543.6542301/94‑1 (MQ=60)
                 CCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGC                                                                          >  SRR4302543.70329/1‑94 (MQ=60)
                  CAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCG                                                                         <  SRR4302543.3575629/94‑1 (MQ=60)
                  CAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCG                                                                         <  SRR4302543.6592205/94‑1 (MQ=60)
                  CAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCG                                                                         >  SRR4302543.585545/1‑94 (MQ=60)
                  CAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCG                                                                         >  SRR4302543.4432171/1‑94 (MQ=60)
                   cgcccctggtcCACACAACCCCAGTAAATATCTTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGG                                                                        <  SRR4302543.6240990/83‑1 (MQ=60)
                   AGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGG                                                                        >  SRR4302543.5802337/1‑94 (MQ=60)
                    GCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGA                                                                       <  SRR4302543.4952667/94‑1 (MQ=60)
                    GCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGA                                                                       >  SRR4302543.3260644/1‑94 (MQ=60)
                     CGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAG                                                                      <  SRR4302543.2307725/94‑1 (MQ=60)
                     CGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAG                                                                      <  SRR4302543.1158384/94‑1 (MQ=60)
                     CGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAG                                                                      <  SRR4302543.3126083/94‑1 (MQ=60)
                     CGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAG                                                                      <  SRR4302543.5387626/94‑1 (MQ=60)
                      GTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGA                                                                     >  SRR4302543.7504994/1‑94 (MQ=60)
                      GTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGA                                                                     <  SRR4302543.859230/94‑1 (MQ=60)
                      GTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGA                                                                     >  SRR4302543.3570734/1‑94 (MQ=60)
                      GTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGA                                                                     >  SRR4302543.7636689/1‑94 (MQ=60)
                       TCTGCTGCACACATCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAG                                                                    <  SRR4302543.5478457/94‑1 (MQ=60)
                       TCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAG                                                                    <  SRR4302543.5478458/94‑1 (MQ=60)
                        CTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGCGAGA                                                                   >  SRR4302543.628855/1‑94 (MQ=60)
                        CTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGA                                                                   <  SRR4302543.4222531/94‑1 (MQ=60)
                        CTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGA                                                                   >  SRR4302543.2681763/1‑94 (MQ=60)
                         TGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAT                                                                  <  SRR4302543.115110/94‑1 (MQ=60)
                         TGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAT                                                                  <  SRR4302543.4055796/94‑1 (MQ=60)
                         TGCTCCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAT                                                                  <  SRR4302543.4055795/94‑1 (MQ=60)
                          gcgaCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATC                                                                 <  SRR4302543.6069941/90‑1 (MQ=60)
                          GCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATC                                                                 <  SRR4302543.6069938/94‑1 (MQ=60)
                           CTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT                                                                <  SRR4302543.1887943/94‑1 (MQ=60)
                           CTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT                                                                <  SRR4302543.3828373/94‑1 (MQ=60)
                           CTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT                                                                >  SRR4302543.2557046/1‑94 (MQ=60)
                           CTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT                                                                <  SRR4302543.4619282/94‑1 (MQ=60)
                           CTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT                                                                >  SRR4302543.1034290/1‑94 (MQ=60)
                           CTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT                                                                <  SRR4302543.5965761/94‑1 (MQ=60)
                           CTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT                                                                <  SRR4302543.3497974/94‑1 (MQ=60)
                            TGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTT                                                               <  SRR4302543.277262/94‑1 (MQ=60)
                            TGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTT                                                               >  SRR4302543.1779383/1‑94 (MQ=60)
                             GCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTC                                                              >  SRR4302543.3050840/1‑94 (MQ=60)
                             GCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTC                                                              <  SRR4302543.3527712/94‑1 (MQ=60)
                             GCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTC                                                              >  SRR4302543.2975514/1‑94 (MQ=60)
                              CACACAACCCCAGTAAATATCGTCGAGGTCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCT                                                             <  SRR4302543.7286368/94‑1 (MQ=60)
                              CACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCT                                                             >  SRR4302543.2082342/1‑94 (MQ=60)
                              CACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCT                                                             <  SRR4302543.405557/94‑1 (MQ=60)
                              CACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCT                                                             <  SRR4302543.3160926/94‑1 (MQ=60)
                              CACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCT                                                             <  SRR4302543.4172673/94‑1 (MQ=60)
                              CACACAACCCCAGTAAATATCGCCGAGGCCCGCCGCTTCCAGCGCCGGGTTGCGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCT                                                             <  SRR4302543.3718448/94‑1 (MQ=60)
                               ACACACCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTG                                                            <  SRR4302543.4207319/94‑1 (MQ=60)
                               ACACAACGCCAGTAAATATCGTCGAGGGCCGCCTCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTG                                                            <  SRR4302543.2394288/94‑1 (MQ=60)
                               ACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTG                                                            <  SRR4302543.2062751/94‑1 (MQ=60)
                               ACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTG                                                            <  SRR4302543.1735341/94‑1 (MQ=60)
                                CACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGC                                                           <  SRR4302543.6523377/94‑1 (MQ=60)
                                CACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGC                                                           >  SRR4302543.4724376/1‑94 (MQ=60)
                                CACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGC                                                           >  SRR4302543.7597711/1‑94 (MQ=60)
                                CACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGC                                                           >  SRR4302543.1718697/1‑94 (MQ=60)
                                CACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGC                                                           <  SRR4302543.645852/94‑1 (MQ=60)
                                CACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGC                                                           >  SRR4302543.486634/1‑94 (MQ=60)
                                CACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGC                                                           >  SRR4302543.4503568/1‑94 (MQ=60)
                                  CAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCAC                                                         <  SRR4302543.3677507/94‑1 (MQ=60)
                                   acccccataAAATATCGTCGAGGGCCGCCGCTTCGAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACG                                                        <  SRR4302543.1054202/85‑1 (MQ=60)
                                   AACCCCAGTAAATATCGTCGAGGGGCGCCGGTTCCAGCGCCGGGGTACGCGCCAGCAGGCCACGCATTAAATAATCGGAGAGATCTTCTGAACG                                                        >  SRR4302543.3221332/1‑94 (MQ=55)
                                   AACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCATGCCCGGGCTACGCGCCAGCACGCTACGCATTAAATGAGCGGCGAGATCTTCTGCACG                                                        >  SRR4302543.7509917/1‑94 (MQ=60)
                                   AACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGCGATCTTCTCCACG                                                        >  SRR4302543.7509767/1‑94 (MQ=60)
                                   AACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACG                                                        <  SRR4302543.7106781/94‑1 (MQ=60)
                                   AACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACG                                                        >  SRR4302543.2376797/1‑94 (MQ=60)
                                   AACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACG                                                        <  SRR4302543.2098202/94‑1 (MQ=60)
                                    ACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGC                                                       >  SRR4302543.6167057/1‑94 (MQ=60)
                                      CCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTCAATGAGCGGAGAGATCTTCTGCACGCAC                                                     >  SRR4302543.1821969/1‑94 (MQ=60)
                                      CCCAGTAAATATCGTCGAGGGCCGCCGCCTCCAACGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCAC                                                     >  SRR4302543.4692862/1‑94 (MQ=60)
                                        CTGTAATTATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGCATTAAATGAGTGGAGAGAACGTCTGCACGCACGT                                                   >  SRR4302543.7111795/1‑94 (MQ=60)
                                        CAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGT                                                   >  SRR4302543.4759129/1‑94 (MQ=60)
                                          GTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTA                                                 >  SRR4302543.811435/1‑94 (MQ=60)
                                          GTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTA                                                 >  SRR4302543.2263671/1‑94 (MQ=60)
                                           TAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTAC                                                >  SRR4302543.7663352/1‑94 (MQ=60)
                                            AAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACG                                               >  SRR4302543.1529905/1‑94 (MQ=60)
                                            AAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACG                                               >  SRR4302543.3053205/1‑94 (MQ=60)
                                             AATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGA                                              >  SRR4302543.3725536/1‑94 (MQ=60)
                                               TATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAA                                            <  SRR4302543.4292347/94‑1 (MQ=60)
                                               AATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAA                                            <  SRR4302543.4570308/94‑1 (MQ=60)
                                                ATNGTCNNGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAA                                           <  SRR4302543.5372940/94‑1 (MQ=60)
                                                ATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAA                                           <  SRR4302543.2370363/94‑1 (MQ=60)
                                                ATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCCGCACGCACGTTACGAAAA                                           >  SRR4302543.1422802/1‑94 (MQ=60)
                                                 TCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAG                                          <  SRR4302543.7694222/94‑1 (MQ=60)
                                                  CGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGC                                         <  SRR4302543.5509284/94‑1 (MQ=60)
                                                  CGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGC                                         >  SRR4302543.3024896/1‑94 (MQ=60)
                                                  CGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGC                                         >  SRR4302543.3207638/1‑94 (MQ=60)
                                                   GTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCA                                        >  SRR4302543.4998689/1‑94 (MQ=60)
                                                    GCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAC                                       <  SRR4302543.7040628/94‑1 (MQ=60)
                                                     CGAGGGCCGCCGCTTCCAGCGCCGNGTTNCNCGCCANCAGGCTACGCATTAAATGAGCGNAGAGATCNNCNGNNCGCANGTNANNANANGNNCN                                      >  SRR4302543.7630101/1‑94 (MQ=53)
                                                      GAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCG                                     <  SRR4302543.7644304/94‑1 (MQ=60)
                                                      GAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCG                                     <  SRR4302543.6140370/94‑1 (MQ=60)
                                                      GAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCG                                     <  SRR4302543.1772938/94‑1 (MQ=60)
                                                       AGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGC                                    >  SRR4302543.5293035/1‑94 (MQ=60)
                                                        GGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCC                                   >  SRR4302543.1854437/1‑94 (MQ=60)
                                                        GGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCC                                   >  SRR4302543.1854436/1‑94 (MQ=60)
                                                         GGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCC                                  <  SRR4302543.3865650/94‑1 (MQ=60)
                                                          GCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCT                                 <  SRR4302543.3555387/94‑1 (MQ=60)
                                                          GCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCT                                 <  SRR4302543.4759496/94‑1 (MQ=60)
                                                          GCCGCCGCTCCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCT                                 <  SRR4302543.1235969/94‑1 (MQ=60)
                                                           CCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTT                                <  SRR4302543.3067677/94‑1 (MQ=60)
                                                           CCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTT                                <  SRR4302543.5509148/94‑1 (MQ=60)
                                                           CCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTT                                <  SRR4302543.5509149/94‑1 (MQ=60)
                                                           CCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTT                                >  SRR4302543.7188595/1‑94 (MQ=60)
                                                           CCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTT                                >  SRR4302543.798702/1‑94 (MQ=60)
                                                            CGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTC                               <  SRR4302543.3930938/94‑1 (MQ=60)
                                                            CGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTC                               >  SRR4302543.4384054/1‑94 (MQ=60)
                                                            CGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTC                               <  SRR4302543.2465415/94‑1 (MQ=60)
                                                             GCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCG                              <  SRR4302543.6675974/94‑1 (MQ=60)
                                                             GCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCG                              <  SRR4302543.1639400/94‑1 (MQ=60)
                                                             GCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCG                              >  SRR4302543.5752194/1‑94 (MQ=60)
                                                              CCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGA                             >  SRR4302543.3923612/1‑94 (MQ=60)
                                                               CGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAA                            >  SRR4302543.1388836/1‑94 (MQ=60)
                                                                GCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAAC                           <  SRR4302543.7332149/94‑1 (MQ=60)
                                                                 CTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACG                          >  SRR4302543.7280575/1‑94 (MQ=60)
                                                                 CTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACG                          >  SRR4302543.495684/1‑94 (MQ=60)
                                                                 CTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACG                          >  SRR4302543.5437673/1‑94 (MQ=60)
                                                                 CTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACG                          <  SRR4302543.1270491/94‑1 (MQ=60)
                                                                  TTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCAGGCACGTTACGAAAAGCACCGCCCTTCGAACGG                         >  SRR4302543.7655698/1‑94 (MQ=60)
                                                                  TTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGG                         >  SRR4302543.844611/1‑94 (MQ=60)
                                                                  TTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGG                         >  SRR4302543.7655697/1‑94 (MQ=60)
                                                                   TCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGC                        <  SRR4302543.1311597/94‑1 (MQ=60)
                                                                    CCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCC                       <  SRR4302543.4514692/94‑1 (MQ=60)
                                                                      CGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCA                     <  SRR4302543.1628017/94‑1 (MQ=60)
                                                                      AGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCA                     >  SRR4302543.1069200/1‑94 (MQ=60)
                                                                       GCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAT                    >  SRR4302543.7376939/1‑94 (MQ=60)
                                                                       GCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAT                    <  SRR4302543.4520159/94‑1 (MQ=60)
                                                                       GCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAT                    >  SRR4302543.6198948/1‑94 (MQ=60)
                                                                       GCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAT                    <  SRR4302543.7767592/94‑1 (MQ=60)
                                                                       GCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAT                    <  SRR4302543.5700683/94‑1 (MQ=60)
                                                                        CGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATC                   <  SRR4302543.5451045/94‑1 (MQ=60)
                                                                        CGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATC                   >  SRR4302543.3287881/1‑94 (MQ=60)
                                                                         GCGGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCG                  <  SRR4302543.81201/94‑1 (MQ=60)
                                                                         GCCGGGTTCCGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCGCGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCG                  <  SRR4302543.2264798/94‑1 (MQ=60)
                                                                         GCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCG                  <  SRR4302543.1729684/94‑1 (MQ=60)
                                                                         GCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCG                  >  SRR4302543.5439270/1‑94 (MQ=60)
                                                                         GCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCG                  >  SRR4302543.5798875/1‑94 (MQ=60)
                                                                         GCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCG                  <  SRR4302543.4318797/94‑1 (MQ=60)
                                                                         GCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCG                  <  SRR4302543.1616389/94‑1 (MQ=60)
                                                                          CCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGG                 <  SRR4302543.5952208/94‑1 (MQ=60)
                                                                           CGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGCACGGCCCATCGGG                >  SRR4302543.3539820/1‑94 (MQ=60)
                                                                           CGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGG                >  SRR4302543.2480939/1‑94 (MQ=60)
                                                                           CGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGG                <  SRR4302543.1939554/94‑1 (MQ=60)
                                                                           CGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGG                <  SRR4302543.6714490/94‑1 (MQ=60)
                                                                            GGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGG               <  SRR4302543.1566534/94‑1 (MQ=60)
                                                                             GGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGCACGGCCCATCGGGGT              >  SRR4302543.5213014/1‑94 (MQ=60)
                                                                             GGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGC              >  SRR4302543.5684119/1‑94 (MQ=60)
                                                                             GGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGAACCGCCCTTCGAACGGCCCATCGGGGT              >  SRR4302543.1135752/1‑94 (MQ=60)
                                                                              GTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTG             <  SRR4302543.7657869/94‑1 (MQ=60)
                                                                              GTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTG             <  SRR4302543.5126985/94‑1 (MQ=60)
                                                                              GTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTG             <  SRR4302543.3102244/94‑1 (MQ=60)
                                                                                TACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCG           >  SRR4302543.3863146/1‑94 (MQ=60)
                                                                                TACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCG           >  SRR4302543.4566657/1‑94 (MQ=60)
                                                                                 ACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGA          <  SRR4302543.1636929/94‑1 (MQ=60)
                                                                                 ACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGA          <  SRR4302543.4765035/94‑1 (MQ=60)
                                                                                  CGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAA         >  SRR4302543.5237829/1‑94 (MQ=60)
                                                                                   GCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAAT        <  SRR4302543.4630484/94‑1 (MQ=60)
                                                                                   GCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAAT        <  SRR4302543.4100516/94‑1 (MQ=60)
                                                                                    CGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATT       <  SRR4302543.3355639/94‑1 (MQ=60)
                                                                                    CGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATT       <  SRR4302543.2728447/94‑1 (MQ=60)
                                                                                    CGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATT       <  SRR4302543.2728448/94‑1 (MQ=60)
                                                                                     GCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTG      <  SRR4302543.6321080/94‑1 (MQ=60)
                                                                                      CCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGC     >  SRR4302543.5825774/1‑94 (MQ=60)
                                                                                        AGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCAT   >  SRR4302543.6736299/1‑94 (MQ=60)
                                                                                        AGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCAT   <  SRR4302543.2274931/94‑1 (MQ=60)
                                                                                         GCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATC  <  SRR4302543.4311782/94‑1 (MQ=60)
                                                                                             |                                                                                         
GATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATC  >  NC_000913/4026159‑4026341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑