Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,106,773 A→G V120V (GTA→GTG)  sbp → periplasmic sulfate‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,106,7730AG99.8% 1252.2 / ‑5.2 395V120V (GTA→GTG) sbpperiplasmic sulfate‑binding protein
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (176/218);  total (176/219)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01

Only 100 of 402 total aligned reads displayed.

AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGG  >  NC_000913/4106683‑4106862
                                                                                          |                                                                                         
aaTTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCg                                                                                         >  2:5185282/1‑93 (MQ=255)
 aTTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGt                                                                                        <  2:6955582/93‑1 (MQ=255)
 aTTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGt                                                                                        >  2:1979917/1‑93 (MQ=255)
 aTTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGt                                                                                        >  2:27164/1‑93 (MQ=255)
   tGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTaa                                                                                      <  1:1251193/93‑1 (MQ=255)
      ggAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAggg                                                                                   <  1:1708617/93‑1 (MQ=255)
       gAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGa                                                                                  <  1:6525696/93‑1 (MQ=255)
         aCGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGaaa                                                                                <  1:765593/93‑1 (MQ=255)
         aCGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGaaa                                                                                >  2:3547492/1‑93 (MQ=255)
          cgcgGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAAt                                                                               <  1:1597790/93‑1 (MQ=255)
          cgcgGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAAt                                                                               >  2:6383666/1‑93 (MQ=255)
           gcgggcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATc                                                                              <  1:2503564/93‑1 (MQ=255)
            cgggcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATcc                                                                             <  1:5100514/93‑1 (MQ=255)
            cgggcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATcc                                                                             <  2:7206254/93‑1 (MQ=255)
              ggcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGa                                                                           >  1:1899838/1‑93 (MQ=255)
               gcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGaa                                                                          <  1:3788434/93‑1 (MQ=255)
               gcggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGaa                                                                          <  1:6043213/93‑1 (MQ=255)
                cggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAg                                                                         >  1:4363324/1‑93 (MQ=255)
                 ggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGc                                                                        <  1:4549247/93‑1 (MQ=255)
                 ggATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGc                                                                        <  1:6254309/93‑1 (MQ=255)
                  gATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCa                                                                       >  1:7392653/1‑93 (MQ=255)
                  gATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCa                                                                       >  1:880317/1‑93 (MQ=255)
                   aTTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAg                                                                      >  1:5687862/1‑93 (MQ=255)
                    ttGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGa                                                                     <  1:3224658/93‑1 (MQ=255)
                    ttGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGa                                                                     >  2:3815567/1‑93 (MQ=255)
                      taTAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATc                                                                   <  1:2109094/92‑1 (MQ=255)
                        tAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCCCCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCa                                                                 <  1:6864132/93‑1 (MQ=255)
                        tAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCa                                                                 <  1:2857755/93‑1 (MQ=255)
                         aaaGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAt                                                                <  1:1978110/93‑1 (MQ=255)
                         aaaGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAt                                                                <  1:1867576/93‑1 (MQ=255)
                           agagTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGa                                                              <  1:4635899/93‑1 (MQ=255)
                           agagTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGa                                                              <  2:1854460/93‑1 (MQ=255)
                           agagTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGa                                                              <  2:1762045/93‑1 (MQ=255)
                           agagTGAGTCAAACGTCTGCCGGATAACTCCGAGCCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGa                                                              <  2:1637625/93‑1 (MQ=38)
                             agTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACt                                                            >  1:1377067/1‑93 (MQ=255)
                              gTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTg                                                           >  2:2236768/1‑93 (MQ=255)
                                ggATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGa                                                         >  2:4435071/1‑93 (MQ=255)
                                  aTCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAAc                                                       <  2:4994806/93‑1 (MQ=255)
                                  aTCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAAc                                                       <  2:2917071/93‑1 (MQ=255)
                                     aaaCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGAt                                                    >  2:418183/1‑93 (MQ=255)
                                      aaCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATc                                                   <  1:7285130/93‑1 (MQ=255)
                                      aaCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATc                                                   <  2:2037530/93‑1 (MQ=255)
                                       aCGTCTGCCGGATAACTCCGCACGGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCt                                                  <  2:4343875/93‑1 (MQ=255)
                                       aCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCt                                                  <  1:6742835/93‑1 (MQ=255)
                                       aCGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCt                                                  <  2:5535193/93‑1 (MQ=255)
                                        cGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTg                                                 <  1:3221953/93‑1 (MQ=255)
                                        cGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTg                                                 >  1:2680740/1‑93 (MQ=255)
                                         gTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGa                                                <  1:483687/93‑1 (MQ=255)
                                          tCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAt                                               >  2:7299697/1‑93 (MQ=255)
                                          tCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAt                                               >  2:3392780/1‑93 (MQ=255)
                                           cTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAtt                                              <  2:4828904/93‑1 (MQ=255)
                                           cTGCCGAATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAtt                                              <  1:6774588/93‑1 (MQ=255)
                                            tGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTa                                             >  1:1011737/1‑93 (MQ=255)
                                            tGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTa                                             >  2:1385944/1‑93 (MQ=255)
                                             gCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTaa                                            <  1:713864/93‑1 (MQ=255)
                                             gCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTaa                                            >  1:5561109/1‑93 (MQ=255)
                                             gCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTaa                                            <  2:5090061/93‑1 (MQ=255)
                                              ccGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTaaa                                           >  2:3056089/1‑93 (MQ=255)
                                                ggATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAcc                                         <  1:4943319/93‑1 (MQ=255)
                                                 gATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCg                                        <  1:1100800/93‑1 (MQ=255)
                                                 gATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCg                                        <  2:1527951/93‑1 (MQ=255)
                                                 gATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCg                                        >  2:7658396/1‑93 (MQ=255)
                                                    aaCTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCgggg                                     >  2:3361367/1‑92 (MQ=255)
                                                     aCTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGgtg                                    <  2:2792663/93‑1 (MQ=255)
                                                      cTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGgtgt                                   <  2:3246157/93‑1 (MQ=255)
                                                        ccGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGttt                                 <  2:779958/93‑1 (MQ=255)
                                                         cGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTc                                >  1:5377635/1‑93 (MQ=255)
                                                          gCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCg                               >  1:4047500/1‑93 (MQ=255)
                                                          gCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCg                               >  2:657541/1‑93 (MQ=255)
                                                            aCCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGt                             >  1:7781603/1‑93 (MQ=255)
                                                            aCCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGt                             <  1:3001003/93‑1 (MQ=255)
                                                             ccGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTg                            >  2:2580051/1‑93 (MQ=255)
                                                              cGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGa                           >  1:1490629/1‑93 (MQ=255)
                                                              cGTACACTTCCACCAGTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGCAACGATCTGATTAAACCGGGGGTTTCGGTGa                           >  2:1598238/1‑93 (MQ=38)
                                                               gTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAt                          >  1:843493/1‑93 (MQ=255)
                                                               gTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAt                          >  1:5788213/1‑93 (MQ=255)
                                                               gTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAt                          >  1:4274035/1‑93 (MQ=255)
                                                                 acacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCa                        <  1:1146303/93‑1 (MQ=255)
                                                                 acacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCa                        <  2:1703719/93‑1 (MQ=255)
                                                                 acacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCa                        <  2:7372528/93‑1 (MQ=255)
                                                                  cacTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAc                       >  2:1030018/1‑93 (MQ=255)
                                                                   acTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACg                      <  1:3973147/93‑1 (MQ=255)
                                                                    cTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGc                     >  1:6401929/1‑93 (MQ=255)
                                                                        ccccaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTaa                 <  1:2189272/91‑1 (MQ=255)
                                                                        caccaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTat                 >  1:4481463/1‑92 (MQ=255)
                                                                        caccaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTaa                 <  2:5677650/93‑1 (MQ=255)
                                                                         accaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAAt                <  1:3652596/93‑1 (MQ=255)
                                                                         accaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAAt                >  1:1302339/1‑93 (MQ=255)
                                                                         accaTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAAt                >  2:4538139/1‑93 (MQ=255)
                                                                          ccaTTGTTTTCCTGGTGCGTAAGTGAAATCCGAAGCAGAACCATGTCTGGAAAGATCTGATTAAACCGAGTGTTTCGGTAATCACGCCTAAta               >  2:874791/1‑92 (MQ=255)
                                                                           caTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATcc              <  2:7568715/93‑1 (MQ=255)
                                                                           caTTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGAGTTTCGGTGATCACGCCTAATcc              >  2:6108207/1‑93 (MQ=255)
                                                                            aTTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCg             <  1:5270616/93‑1 (MQ=255)
                                                                                ttttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGaaaa         >  2:6211519/1‑93 (MQ=255)
                                                                                ttttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGaaaa         >  2:3682310/1‑93 (MQ=255)
                                                                                ttttCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCTGTGATCACGCCTAATCCGaaaa         <  2:6356431/93‑1 (MQ=255)
                                                                                gtttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGaaaa         <  2:6619549/92‑1 (MQ=255)
                                                                                 tttCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAg        >  1:7096615/1‑93 (MQ=255)
                                                                                    ccTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGctc     <  1:3277000/93‑1 (MQ=255)
                                                                                      tGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCtg   >  2:5827786/1‑93 (MQ=255)
                                                                                          |                                                                                         
AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGG  >  NC_000913/4106683‑4106862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 222 total aligned reads displayed.
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGC  >  NC_000913/4106680‑4106866
                                                                                             |                                                                                             
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTG                                                                                               <  SRR4302543.4957662/94‑1 (MQ=60)
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTG                                                                                               <  SRR4302543.11188/94‑1 (MQ=60)
 GCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGC                                                                                              <  SRR4302543.171276/94‑1 (MQ=60)
  CAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCG                                                                                             >  SRR4302543.4588812/1‑94 (MQ=60)
  CAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCG                                                                                             >  SRR4302543.1488585/1‑94 (MQ=60)
  CAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCG                                                                                             <  SRR4302543.2876348/94‑1 (MQ=60)
  CAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCG                                                                                             <  SRR4302543.5122320/94‑1 (MQ=60)
   AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGT                                                                                            <  SRR4302543.2178761/94‑1 (MQ=60)
   AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGT                                                                                            >  SRR4302543.7986230/1‑94 (MQ=60)
   AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGT                                                                                            >  SRR4302543.4513578/1‑94 (MQ=60)
   AATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGT                                                                                            <  SRR4302543.3529270/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302543.6167250/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302543.208783/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302543.1262413/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302543.1071749/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302543.4548650/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302543.3951611/94‑1 (MQ=60)
      TGCGGAACGCGGGCGGAGTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAG                                                                                         <  SRR4302543.2344146/94‑1 (MQ=60)
       GCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGG                                                                                        <  SRR4302543.1334300/94‑1 (MQ=60)
       GCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGG                                                                                        <  SRR4302543.6146009/94‑1 (MQ=60)
        CGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGG                                                                                       <  SRR4302543.908572/94‑1 (MQ=60)
         GGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGA                                                                                      <  SRR4302543.1723908/94‑1 (MQ=60)
          GAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAA                                                                                     <  SRR4302543.6587143/94‑1 (MQ=60)
          GAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAA                                                                                     >  SRR4302543.2714878/1‑94 (MQ=60)
          GAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAA                                                                                     >  SRR4302543.4992167/1‑94 (MQ=60)
           AACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAA                                                                                    <  SRR4302543.3261125/94‑1 (MQ=60)
           AACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAA                                                                                    <  SRR4302543.7262132/94‑1 (MQ=60)
            ACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAAT                                                                                   <  SRR4302543.1062683/94‑1 (MQ=60)
            ACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAAT                                                                                   <  SRR4302543.772330/94‑1 (MQ=60)
            ACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCAGTGTTTTCCTGGTGCGTAAGGGAAAT                                                                                   <  SRR4302543.1062684/94‑1 (MQ=60)
             CGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATC                                                                                  <  SRR4302543.1612045/94‑1 (MQ=60)
             CGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATC                                                                                  <  SRR4302543.1979657/94‑1 (MQ=60)
              GCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCC                                                                                 <  SRR4302543.2526293/94‑1 (MQ=60)
              GCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCC                                                                                 <  SRR4302543.6658934/94‑1 (MQ=60)
              GCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCC                                                                                 >  SRR4302543.4968416/1‑94 (MQ=60)
              GCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCC                                                                                 <  SRR4302543.5865414/94‑1 (MQ=60)
               CGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCG                                                                                <  SRR4302543.7333220/94‑1 (MQ=60)
               CGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCG                                                                                <  SRR4302543.5128819/94‑1 (MQ=60)
               CGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCG                                                                                <  SRR4302543.5146694/94‑1 (MQ=60)
                GGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGA                                                                               >  SRR4302543.4609220/1‑94 (MQ=60)
                GGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGA                                                                               >  SRR4302543.6636008/1‑94 (MQ=60)
                GGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGA                                                                               >  SRR4302543.1916933/1‑94 (MQ=60)
                  GCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAG                                                                             <  SRR4302543.5395006/94‑1 (MQ=60)
                  GCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAG                                                                             <  SRR4302543.3821815/94‑1 (MQ=60)
                   CGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGC                                                                            <  SRR4302543.1862282/94‑1 (MQ=60)
                    GGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCA                                                                           <  SRR4302543.6313307/94‑1 (MQ=60)
                    GGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCA                                                                           >  SRR4302543.7463659/1‑94 (MQ=60)
                    GGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCA                                                                           <  SRR4302543.4590679/94‑1 (MQ=60)
                    GGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCA                                                                           >  SRR4302543.888133/1‑94 (MQ=60)
                     GATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAG                                                                          >  SRR4302543.5739769/1‑94 (MQ=60)
                     GATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAG                                                                          >  SRR4302543.3251337/1‑94 (MQ=60)
                       TTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACGCTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAT                                                                        <  SRR4302543.3253803/94‑1 (MQ=60)
                       TTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAT                                                                        <  SRR4302543.7801528/94‑1 (MQ=60)
                       TTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAT                                                                        <  SRR4302543.3253805/94‑1 (MQ=60)
                       GTGATAAAGAGTGGATCAAACGTCTGCCGTATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGAT                                                                        <  SRR4302543.1119901/94‑1 (MQ=60)
                        TGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATC                                                                       <  SRR4302543.214250/94‑1 (MQ=60)
                        TGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATC                                                                       >  SRR4302543.86928/1‑94 (MQ=60)
                        TGATAAAGAGTGGAACAGACGTATGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATC                                                                       <  SRR4302543.6834987/94‑1 (MQ=60)
                         TATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCC                                                                      <  SRR4302543.2127972/94‑1 (MQ=60)
                         GATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCC                                                                      <  SRR4302543.323470/94‑1 (MQ=60)
                         GATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCC                                                                      >  SRR4302543.6880022/1‑94 (MQ=60)
                         GATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCC                                                                      >  SRR4302543.3230728/1‑94 (MQ=60)
                          ATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCA                                                                     >  SRR4302543.1676064/1‑94 (MQ=60)
                          ATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCA                                                                     >  SRR4302543.1531332/1‑94 (MQ=60)
                          ATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCA                                                                     >  SRR4302543.7589639/1‑94 (MQ=60)
                          ATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCA                                                                     >  SRR4302543.3078389/1‑94 (MQ=60)
                          ATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCAAAGCAGATCCA                                                                     >  SRR4302543.1676066/1‑94 (MQ=60)
                           TAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCCCCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAT                                                                    <  SRR4302543.6928807/94‑1 (MQ=60)
                           TAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAT                                                                    <  SRR4302543.3831467/94‑1 (MQ=60)
                           TAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAT                                                                    <  SRR4302543.756023/94‑1 (MQ=60)
                           GAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCAT                                                                    <  SRR4302543.5550548/94‑1 (MQ=60)
                            AAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATG                                                                   <  SRR4302543.1884357/94‑1 (MQ=60)
                            AAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATG                                                                   <  SRR4302543.1884358/94‑1 (MQ=60)
                            AAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATG                                                                   <  SRR4302543.1995843/94‑1 (MQ=60)
                            AAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATG                                                                   <  SRR4302543.7575132/94‑1 (MQ=60)
                             AAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGA                                                                  <  SRR4302543.6290712/94‑1 (MQ=60)
                             AAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCAGAAGCAGATCCATGA                                                                  >  SRR4302543.7934838/1‑94 (MQ=60)
                              AGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAC                                                                 <  SRR4302543.267549/94‑1 (MQ=60)
                              AGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGAC                                                                 <  SRR4302543.4678053/94‑1 (MQ=60)
                               GAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACT                                                                >  SRR4302543.1389441/1‑94 (MQ=60)
                               GAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACT                                                                >  SRR4302543.5775190/1‑94 (MQ=60)
                                 GTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGG                                                              >  SRR4302543.3019679/1‑94 (MQ=60)
                                   GGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAA                                                            <  SRR4302543.3988029/94‑1 (MQ=60)
                                    GATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAAC                                                           <  SRR4302543.4808503/94‑1 (MQ=60)
                                    GATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAAC                                                           <  SRR4302543.5459165/94‑1 (MQ=60)
                                     ATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACG                                                          <  SRR4302543.7998484/94‑1 (MQ=60)
                                       CAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGAT                                                        >  SRR4302543.4569868/1‑94 (MQ=60)
                                       CAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGAT                                                        >  SRR4302543.2556924/1‑94 (MQ=60)
                                       CAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGAT                                                        <  SRR4302543.2243014/94‑1 (MQ=60)
                                        AAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATC                                                       <  SRR4302543.1330331/94‑1 (MQ=60)
                                        AAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATC                                                       <  SRR4302543.1140419/94‑1 (MQ=60)
                                        AAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATC                                                       >  SRR4302543.3709144/1‑94 (MQ=60)
                                        AAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATC                                                       <  SRR4302543.1140416/94‑1 (MQ=60)
                                         AACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCTAAGCAGATACATGACTGGAACGATCT                                                      >  SRR4302543.6537849/1‑94 (MQ=60)
                                         AACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCT                                                      <  SRR4302543.7355472/94‑1 (MQ=60)
                                         AACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCT                                                      <  SRR4302543.4287586/94‑1 (MQ=60)
                                          ACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTG                                                     <  SRR4302543.1901698/94‑1 (MQ=60)
                                          ACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTG                                                     >  SRR4302543.2705036/1‑94 (MQ=60)
                                          ACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTG                                                     <  SRR4302543.6806509/94‑1 (MQ=60)
                                           CGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGA                                                    >  SRR4302543.5231748/1‑94 (MQ=60)
                                           CGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGA                                                    >  SRR4302543.4319127/1‑94 (MQ=60)
                                           CGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGA                                                    >  SRR4302543.7848550/1‑94 (MQ=60)
                                           CGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGA                                                    <  SRR4302543.3251072/94‑1 (MQ=60)
                                           CGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGA                                                    >  SRR4302543.2957399/1‑94 (MQ=60)
                                            GTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAT                                                   >  SRR4302543.5404483/1‑94 (MQ=60)
                                            GTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAT                                                   >  SRR4302543.1222689/1‑94 (MQ=60)
                                            GTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAT                                                   <  SRR4302543.874289/94‑1 (MQ=60)
                                            GTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAT                                                   <  SRR4302543.4889872/94‑1 (MQ=60)
                                            GTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGAT                                                   <  SRR4302543.488156/94‑1 (MQ=60)
                                             TCTGCCGGATACCTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATT                                                  <  SRR4302543.4045813/94‑1 (MQ=60)
                                              CTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 >  SRR4302543.1020686/1‑94 (MQ=60)
                                              CTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 <  SRR4302543.6838587/94‑1 (MQ=60)
                                              CTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 >  SRR4302543.6984792/1‑94 (MQ=60)
                                              CTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 >  SRR4302543.2716097/1‑94 (MQ=60)
                                              CTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 <  SRR4302543.2027691/94‑1 (MQ=60)
                                              CTGCCGAATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTA                                                 <  SRR4302543.6838586/94‑1 (MQ=60)
                                               TGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAA                                                >  SRR4302543.5611683/1‑94 (MQ=60)
                                               TGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAA                                                >  SRR4302543.7170194/1‑94 (MQ=60)
                                               TGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAA                                                <  SRR4302543.2146390/94‑1 (MQ=60)
                                                GCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAA                                               <  SRR4302543.720336/94‑1 (MQ=60)
                                                GCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAA                                               <  SRR4302543.1507151/94‑1 (MQ=60)
                                                 CCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAC                                              <  SRR4302543.5234217/94‑1 (MQ=60)
                                                 CCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAAC                                              >  SRR4302543.3768916/1‑94 (MQ=60)
                                                  CGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACC                                             <  SRR4302543.7373090/94‑1 (MQ=60)
                                                  CGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACC                                             >  SRR4302543.3745514/1‑94 (MQ=60)
                                                  CGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACC                                             <  SRR4302543.5694952/94‑1 (MQ=60)
                                                    GATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGG                                           <  SRR4302543.1110716/94‑1 (MQ=60)
                                                     ATACCTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGG                                          <  SRR4302543.4854424/94‑1 (MQ=60)
                                                     ATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGG                                          >  SRR4302543.4313814/1‑94 (MQ=60)
                                                       AACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTG                                        <  SRR4302543.3474004/94‑1 (MQ=60)
                                                        ACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGT                                       >  SRR4302543.165847/1‑94 (MQ=60)
                                                         CTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTT                                      >  SRR4302543.5439531/1‑94 (MQ=60)
                                                         CTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTT                                      >  SRR4302543.4071394/1‑94 (MQ=60)
                                                          TCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTT                                     <  SRR4302543.4673966/94‑1 (MQ=60)
                                                          TCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTT                                     <  SRR4302543.3289581/94‑1 (MQ=60)
                                                          TCCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTT                                     <  SRR4302543.1829669/94‑1 (MQ=60)
                                                           CCGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTC                                    >  SRR4302543.5426375/1‑94 (MQ=60)
                                                            CGCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCG                                   >  SRR4302543.4083721/1‑94 (MQ=60)
                                                             GCACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGG                                  <  SRR4302543.682856/94‑1 (MQ=60)
                                                              CACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGT                                 >  SRR4302543.1481619/1‑94 (MQ=60)
                                                              CACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGT                                 >  SRR4302543.1263159/1‑94 (MQ=60)
                                                               ACCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTG                                <  SRR4302543.3028208/94‑1 (MQ=60)
                                                                CCGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGA                               >  SRR4302543.1504040/1‑94 (MQ=60)
                                                                 CGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAT                              >  SRR4302543.850957/1‑94 (MQ=60)
                                                                 CGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAT                              >  SRR4302543.4312879/1‑94 (MQ=60)
                                                                 CGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAT                              >  SRR4302543.5840878/1‑94 (MQ=60)
                                                                 CGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAT                              <  SRR4302543.5830517/94‑1 (MQ=60)
                                                                 CGTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGAT                              >  SRR4302543.5753665/1‑94 (MQ=60)
                                                                  GTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATC                             >  SRR4302543.4232275/1‑94 (MQ=60)
                                                                  GTACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATC                             <  SRR4302543.3254998/94‑1 (MQ=60)
                                                                   TACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCA                            >  SRR4302543.190257/1‑94 (MQ=60)
                                                                    ACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAC                           <  SRR4302543.870283/94‑1 (MQ=60)
                                                                    ACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAC                           <  SRR4302543.1156750/94‑1 (MQ=60)
                                                                    ACACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAC                           <  SRR4302543.5614344/94‑1 (MQ=60)
                                                                      ACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGC                         >  SRR4302543.6462203/1‑94 (MQ=60)
                                                                      ACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGC                         >  SRR4302543.6462202/1‑94 (MQ=60)
                                                                      ACTTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGC                         <  SRR4302543.4008366/94‑1 (MQ=60)
                                                                        TTCCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCT                       >  SRR4302543.5245311/1‑94 (MQ=60)
                                                                          CCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAT                     >  SRR4302543.4522163/1‑94 (MQ=60)
                                                                          CCACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAA                     >  SRR4302543.4522162/1‑94 (MQ=60)
                                                                           CCCCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAAT                    <  SRR4302543.2208924/94‑1 (MQ=60)
                                                                           CACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGACCGATATGATTAAACCGGGTGTTTCGGTGATCACGCCTAAT                    >  SRR4302543.1313903/1‑94 (MQ=60)
                                                                           CACCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAAT                    >  SRR4302543.1313904/1‑94 (MQ=60)
                                                                             CCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCC                  >  SRR4302543.1297265/1‑94 (MQ=60)
                                                                             CCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCC                  <  SRR4302543.5014847/94‑1 (MQ=60)
                                                                             CCATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCC                  >  SRR4302543.7459602/1‑94 (MQ=60)
                                                                               ATTGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGA                >  SRR4302543.6595425/1‑94 (MQ=60)
                                                                               ATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGA                <  SRR4302543.5318164/94‑1 (MQ=60)
                                                                                 TGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAA              >  SRR4302543.1950507/1‑94 (MQ=60)
                                                                                 TGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAA              >  SRR4302543.4213228/1‑94 (MQ=60)
                                                                                 TGTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAA              >  SRR4302543.6349996/1‑94 (MQ=60)
                                                                                  GTTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAA             <  SRR4302543.4359611/94‑1 (MQ=60)
                                                                                   TTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAGGCCTAATCCGAAAAG            <  SRR4302543.7748480/94‑1 (MQ=60)
                                                                                   TTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCAGGCCTAATCCGAAAAG            <  SRR4302543.7748478/94‑1 (MQ=60)
                                                                                   TTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAG            >  SRR4302543.7165527/1‑94 (MQ=60)
                                                                                   TTTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGGTTTTCGGTGATCACGCCTAATCCGAAAAG            <  SRR4302543.1445735/94‑1 (MQ=60)
                                                                                    TTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGC           <  SRR4302543.2531602/94‑1 (MQ=60)
                                                                                    TTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGC           <  SRR4302543.1223183/94‑1 (MQ=60)
                                                                                    TTTCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGC           >  SRR4302543.7182974/1‑94 (MQ=60)
                                                                                      TCCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTC         >  SRR4302543.2834659/1‑94 (MQ=60)
                                                                                       CCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCT        >  SRR4302543.6314994/1‑94 (MQ=60)
                                                                                       CCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCT        <  SRR4302543.6915939/94‑1 (MQ=60)
                                                                                       CCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCT        <  SRR4302543.3306594/94‑1 (MQ=60)
                                                                                       CCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCT        <  SRR4302543.4730708/94‑1 (MQ=60)
                                                                                       CCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCT        <  SRR4302543.4476502/94‑1 (MQ=60)
                                                                                       CCTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCT        >  SRR4302543.3027415/1‑94 (MQ=60)
                                                                                        CTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTG       <  SRR4302543.7212592/94‑1 (MQ=60)
                                                                                        CTGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTG       <  SRR4302543.7118083/94‑1 (MQ=60)
                                                                                         TGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGG      <  SRR4302543.639140/94‑1 (MQ=60)
                                                                                         TGGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGG      <  SRR4302543.4885588/94‑1 (MQ=60)
                                                                                          GGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGT     <  SRR4302543.3569972/94‑1 (MQ=60)
                                                                                          GGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGT     <  SRR4302543.599076/94‑1 (MQ=60)
                                                                                          GGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGT     <  SRR4302543.7162715/94‑1 (MQ=60)
                                                                                          GGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGT     <  SRR4302543.1922767/94‑1 (MQ=60)
                                                                                          GGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGT     <  SRR4302543.599075/94‑1 (MQ=60)
                                                                                          GGTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGT     >  SRR4302543.1775055/1‑94 (MQ=60)
                                                                                           GTGCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTG    >  SRR4302543.1369635/1‑94 (MQ=60)
                                                                                             GCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGC  >  SRR4302543.6688841/1‑94 (MQ=60)
                                                                                             GCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGC  <  SRR4302543.5600787/94‑1 (MQ=60)
                                                                                             GCGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGC  >  SRR4302543.1583375/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGCAATTGCGGAACGCGGGCGGATTGATAAAGAGTGGATCAAACGTCTGCCGGATAACTCCGCACCGTACACTTCCACCATTGTTTTCCTGGTACGTAAGGGAAATCCGAAGCAGATCCATGACTGGAACGATCTGATTAAACCGGGTGTTTCGGTGATCACGCCTAATCCGAAAAGCTCTGGTGGC  >  NC_000913/4106680‑4106866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑