Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,116,372 T→C intergenic (+32/+53) yiiU → / ← menG hypothetical protein/MenG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,116,3720TC99.7% 1178.2 / NA 368intergenic (+32/+53)yiiU/menGhypothetical protein/MenG
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (156/211);  minor base A (0/1);  total (156/212)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 379 total aligned reads displayed.

AGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATC  >  NC_000913/4116282‑4116461
                                                                                          |                                                                                         
agcagAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGTTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACcgt                                                                                         <  2:6771703/93‑1 (MQ=255)
agcagAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACcgt                                                                                         <  2:3823705/93‑1 (MQ=255)
 gcagAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACcgtg                                                                                        >  1:2506579/1‑93 (MQ=255)
 gcagAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACcgtg                                                                                        >  2:4375610/1‑93 (MQ=255)
   agAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTa                                                                                      <  1:7759622/93‑1 (MQ=255)
   agAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTa                                                                                      <  2:1196020/93‑1 (MQ=255)
   agAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTa                                                                                      <  2:6514896/93‑1 (MQ=255)
     aaCGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAgg                                                                                    >  1:4240534/1‑93 (MQ=255)
     aaCGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAgg                                                                                    >  1:1346598/1‑93 (MQ=255)
       cGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGcc                                                                                  >  1:3102462/1‑93 (MQ=255)
       atgCTGGCAGAAAAGGCTGCGTGTCTTGCTGGGGCGCATTGAAGTGGTCTGAGTACGCTTCATCTTCCGCGTACTTTCTTTACCGTGTAGGcc                                                                                  <  1:824200/91‑1 (MQ=255)
        ggCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCa                                                                                 >  1:3965642/1‑93 (MQ=255)
          cTGGCAGGAACGTCTGCAGTCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAAc                                                                               <  2:6109301/93‑1 (MQ=255)
           tGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACa                                                                              <  2:2250841/93‑1 (MQ=255)
           tGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACa                                                                              <  1:6409190/93‑1 (MQ=255)
            ggCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAg                                                                             <  2:390361/93‑1 (MQ=255)
            ggCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAg                                                                             >  2:2812011/1‑93 (MQ=255)
            ggCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAg                                                                             >  2:24887/1‑93 (MQ=255)
            ggCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAg                                                                             >  2:3157732/1‑93 (MQ=255)
             gCAGGGACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCAGCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAgg                                                                            <  2:4591306/93‑1 (MQ=255)
                ggAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTaa                                                                         <  2:6195779/93‑1 (MQ=255)
                ggAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTaa                                                                         >  2:5891666/1‑93 (MQ=255)
                 gAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAAc                                                                        <  1:6162472/93‑1 (MQ=255)
                   aCGTCTGCAGGCCTTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGc                                                                      <  2:3682889/93‑1 (MQ=255)
                   aCGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGc                                                                      <  2:1118369/93‑1 (MQ=255)
                    cGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCa                                                                     <  2:6677394/93‑1 (MQ=255)
                    cGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCa                                                                     <  2:288647/93‑1 (MQ=255)
                      tCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGa                                                                   >  2:4182264/1‑93 (MQ=255)
                      tCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGa                                                                   >  2:2471397/1‑93 (MQ=255)
                      tCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGa                                                                   <  1:7240076/93‑1 (MQ=255)
                      tCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGa                                                                   <  2:7142506/93‑1 (MQ=255)
                           aGGCCCTGCTGGGTCGCATGGAAGAGCTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGaaaaaa                                                              <  1:7363055/93‑1 (MQ=255)
                               ccTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAAGCa                                                          >  1:1525766/1‑93 (MQ=255)
                                ctgctgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCAc                                                         <  2:6004863/93‑1 (MQ=255)
                                ctgctgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCAc                                                         <  1:1592494/93‑1 (MQ=255)
                                 tgctgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCAcc                                                        <  1:4634850/93‑1 (MQ=255)
                                 tgctgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCAcc                                                        >  1:6023842/1‑93 (MQ=255)
                                  gctgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCt                                                       <  2:2664234/93‑1 (MQ=255)
                                  gctgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCt                                                       >  1:7087955/1‑93 (MQ=255)
                                    tgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTg                                                     <  2:5195338/93‑1 (MQ=255)
                                    tgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTg                                                     <  1:3903478/93‑1 (MQ=255)
                                    tgGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTg                                                     <  2:7871874/93‑1 (MQ=255)
                                       gTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCgg                                                  <  2:6906661/93‑1 (MQ=255)
                                        tCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAATGCAGAAAAAAGGCACCCTGccgg                                                 >  2:4292626/1‑90 (MQ=255)
                                         cGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTg                                                <  1:1131455/93‑1 (MQ=255)
                                         cGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTg                                                >  2:7624530/1‑93 (MQ=255)
                                           cATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGcc                                              <  2:1016540/93‑1 (MQ=255)
                                            aTGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCt                                             <  2:3317626/93‑1 (MQ=255)
                                            aTGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCt                                             <  1:207283/93‑1 (MQ=255)
                                             tGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCtt                                            <  1:6902452/93‑1 (MQ=255)
                                             tGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCtt                                            <  1:5713167/93‑1 (MQ=255)
                                             tGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCtt                                            >  2:2110105/1‑93 (MQ=255)
                                              ggAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGGGGGGCCttt                                           >  2:571450/1‑93 (MQ=255)
                                              ggAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCttt                                           <  1:5248555/93‑1 (MQ=255)
                                              ggAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCttt                                           >  1:224543/1‑93 (MQ=255)
                                               gAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTc                                          <  1:1709944/93‑1 (MQ=255)
                                                  gagGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCttt                                       >  2:3367725/1‑92 (MQ=255)
                                                  gagGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTa                                       >  2:81164/1‑93 (MQ=255)
                                                  gagGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTa                                       >  2:2030957/1‑93 (MQ=255)
                                                  gagGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTa                                       <  1:1828556/93‑1 (MQ=255)
                                                    ggTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACGTTGCGGTGCCTTTCTTATc                                     <  1:3741416/93‑1 (MQ=255)
                                                     gTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCa                                    <  2:1951042/93‑1 (MQ=255)
                                                     gTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCa                                    >  1:3539954/1‑93 (MQ=255)
                                                     gTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCa                                    >  2:3266674/1‑93 (MQ=255)
                                                        tGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTc                                 <  1:4941196/93‑1 (MQ=255)
                                                         gATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCa                                >  1:3639538/1‑93 (MQ=255)
                                                         gATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCa                                <  2:1458954/93‑1 (MQ=255)
                                                          aTTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCaa                               <  1:347972/93‑1 (MQ=255)
                                                           ttACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAat                              <  1:3279403/93‑1 (MQ=255)
                                                            tACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAata                             <  1:2305784/93‑1 (MQ=255)
                                                            tACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAata                             <  2:1683395/93‑1 (MQ=255)
                                                             aCGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAatat                            <  1:5054962/93‑1 (MQ=255)
                                                                cTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCCCCTTGCGGTGCCTTTCTTATCATTCAATATCCa                         <  1:6850011/93‑1 (MQ=255)
                                                                cTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCa                         <  2:5561516/93‑1 (MQ=255)
                                                                cTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAAGGACCTTGCGGGGGCTTTTTTTTCATTTCATATACa                         >  2:2936643/1‑93 (MQ=255)
                                                                 ttCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATTCac                        >  1:448170/1‑92 (MQ=255)
                                                                 ttCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAg                        >  1:1754510/1‑93 (MQ=255)
                                                                  tCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGc                       >  1:2763592/1‑93 (MQ=255)
                                                                     tCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATTCAGCGGa                    >  1:2951829/1‑93 (MQ=255)
                                                                     tCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGa                    >  2:4706861/1‑93 (MQ=255)
                                                                     tCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGa                    <  1:512776/93‑1 (MQ=255)
                                                                     tCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGa                    >  1:6569350/1‑93 (MQ=255)
                                                                     tCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTACGGTGCCTTTCTTATTATTCAATATCCAACGGa                    >  2:7308816/1‑93 (MQ=255)
                                                                     tCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCCTGCGGTGCCTTTCTTTTCATTCAATATTCAGCGGa                    >  2:6357251/1‑93 (MQ=255)
                                                                       ttCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGAtc                  <  1:4422129/93‑1 (MQ=255)
                                                                       ttCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGAtc                  <  1:5666592/93‑1 (MQ=255)
                                                                           gcgTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGAtcttct              <  2:4884293/93‑1 (MQ=255)
                                                                            cttAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGCTCTTCTg             >  2:5492662/3‑93 (MQ=255)
                                                                             gTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAACGCACCTTTCGGTGCCTTTCTTATCATTCAAAATCCACCCGATCCTCCGa            >  1:101643/1‑93 (MQ=255)
                                                                              tAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGaa           >  1:5525788/1‑93 (MQ=255)
                                                                                aTTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAg         <  1:6261182/93‑1 (MQ=255)
                                                                                aTTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAg         >  2:2334751/1‑93 (MQ=255)
                                                                                 tttCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGa        >  2:4066231/1‑93 (MQ=255)
                                                                                    cTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCGCCTTGCGGTGCCTTCCTTATCATTCAATATCCAGCGGATCTTCTGAAAGaata     <  1:5350340/93‑1 (MQ=255)
                                                                                     tttACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATTCAGCGGATCTTCTGAAAGaataa    >  2:1894095/1‑93 (MQ=255)
                                                                                     tttACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGaataa    >  2:3770055/1‑93 (MQ=255)
                                                                                     tttACAGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGaataa    <  2:7169335/93‑1 (MQ=255)
                                                                                      ttACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGaataat   <  2:7785370/93‑1 (MQ=255)
                                                                                       tACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATc  <  1:6081978/93‑1 (MQ=255)
                                                                                       tACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATc  >  2:7410564/1‑93 (MQ=255)
                                                                                          |                                                                                         
AGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATC  >  NC_000913/4116282‑4116461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACAGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGG  >  NC_000913/4116279‑4116465
                                                                                             |                                                                                             
AACAGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACC                                                                                               >  SRR4302543.2969609/1‑94 (MQ=60)
AACAGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACC                                                                                               <  SRR4302543.2410971/94‑1 (MQ=60)
AACAGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACC                                                                                               <  SRR4302543.5693164/94‑1 (MQ=60)
AACAGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACC                                                                                               <  SRR4302543.6594899/94‑1 (MQ=60)
AACAGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACC                                                                                               >  SRR4302543.1923861/1‑94 (MQ=60)
  CAGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGT                                                                                             <  SRR4302543.6926372/94‑1 (MQ=60)
   AGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTG                                                                                            >  SRR4302543.2529339/1‑94 (MQ=60)
   AGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTG                                                                                            <  SRR4302543.5595948/94‑1 (MQ=60)
   AGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTG                                                                                            <  SRR4302543.3327154/94‑1 (MQ=60)
      gctcggcattcctgctgaaccgctcttccgatctccactctATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAG                                                                                         <  SRR4302543.6190908/53‑1 (MQ=60)
      AGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAG                                                                                         <  SRR4302543.7111470/94‑1 (MQ=60)
      AGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAG                                                                                         <  SRR4302543.4670080/94‑1 (MQ=60)
      AGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAG                                                                                         <  SRR4302543.1564720/94‑1 (MQ=60)
      AGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAG                                                                                         <  SRR4302543.7832851/94‑1 (MQ=60)
      AGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAG                                                                                         >  SRR4302543.7221716/1‑94 (MQ=60)
       GAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGG                                                                                        <  SRR4302543.6497683/94‑1 (MQ=60)
       GAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGG                                                                                        >  SRR4302543.1358636/1‑94 (MQ=60)
       GAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGG                                                                                        >  SRR4302543.4279009/1‑94 (MQ=60)
        AACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGC                                                                                       <  SRR4302543.3439472/94‑1 (MQ=60)
         ACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCC                                                                                      >  SRR4302543.3130364/1‑94 (MQ=60)
          atgctggcagaaaaggctgcgtgtctTGCTGGGGCGCATTGAAGTGGTCTGAGTACGCTTCATCTTCCGCGTACTTTCTTTACCGTGTAGGCCA                                                                                     <  SRR4302543.831465/68‑1 (MQ=40)
          CGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCA                                                                                     >  SRR4302543.4000766/1‑94 (MQ=60)
          CGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCA                                                                                     >  SRR4302543.4000767/1‑94 (MQ=60)
          CGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCA                                                                                     >  SRR4302543.7498141/1‑94 (MQ=60)
          CGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCA                                                                                     <  SRR4302543.831463/94‑1 (MQ=60)
          CGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCA                                                                                     >  SRR4302543.4983676/1‑94 (MQ=60)
            GCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAAC                                                                                   <  SRR4302543.5164881/94‑1 (MQ=60)
             CTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTCGGCCAACA                                                                                  >  SRR4302543.2809067/1‑94 (MQ=60)
              TGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAG                                                                                 <  SRR4302543.6469548/94‑1 (MQ=60)
              TGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAG                                                                                 >  SRR4302543.5107029/1‑94 (MQ=60)
                GCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGT                                                                               <  SRR4302543.3512549/94‑1 (MQ=60)
                 CAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTA                                                                              <  SRR4302543.6320753/94‑1 (MQ=60)
                  AGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAA                                                                             <  SRR4302543.160995/94‑1 (MQ=60)
                  AGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAA                                                                             <  SRR4302543.7053348/94‑1 (MQ=60)
                  AGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAA                                                                             <  SRR4302543.230940/94‑1 (MQ=60)
                   GGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAAC                                                                            <  SRR4302543.6849679/94‑1 (MQ=60)
                   GGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAAC                                                                            <  SRR4302543.325246/94‑1 (MQ=60)
                    GAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACG                                                                           <  SRR4302543.6220794/94‑1 (MQ=60)
                    GAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACG                                                                           >  SRR4302543.5097454/1‑94 (MQ=60)
                       CGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAG                                                                        <  SRR4302543.3747563/94‑1 (MQ=60)
                       CGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAG                                                                        <  SRR4302543.3414473/94‑1 (MQ=60)
                       CGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAG                                                                        <  SRR4302543.6943309/94‑1 (MQ=60)
                        GTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGA                                                                       >  SRR4302543.4023962/1‑94 (MQ=60)
                        GTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGA                                                                       >  SRR4302543.7421675/1‑94 (MQ=60)
                         TCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAA                                                                      <  SRR4302543.7310158/94‑1 (MQ=60)
                          CTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAA                                                                     >  SRR4302543.3676287/1‑94 (MQ=60)
                          CTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAA                                                                     >  SRR4302543.3537966/1‑94 (MQ=60)
                            GCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTCCGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAA                                                                   <  SRR4302543.2264229/94‑1 (MQ=60)
                             CAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAA                                                                  >  SRR4302543.2500918/1‑94 (MQ=60)
                              AGGCCCTGCTGGGTCGCATGGAATAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAG                                                                 >  SRR4302543.1381459/1‑94 (MQ=60)
                              AGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAG                                                                 >  SRR4302543.6966697/1‑94 (MQ=60)
                              AGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAG                                                                 <  SRR4302543.4669844/94‑1 (MQ=60)
                              AGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAA                                                                 >  SRR4302543.1609177/1‑94 (MQ=60)
                              AGGCCCTGCTGGGTCGCATGGAAGAGGTCCGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAG                                                                 <  SRR4302543.7371820/94‑1 (MQ=60)
                              AGGCCCTGCTGGGTCGCATGGAAGAGCTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAG                                                                 <  SRR4302543.7433859/94‑1 (MQ=60)
                               GGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAAG                                                                >  SRR4302543.23552/1‑94 (MQ=60)
                                GCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGC                                                               <  SRR4302543.145850/94‑1 (MQ=60)
                                 CCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAAGCA                                                              >  SRR4302543.1539461/1‑94 (MQ=60)
                                   CTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACC                                                            <  SRR4302543.5327475/94‑1 (MQ=60)
                                   CTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACC                                                            >  SRR4302543.6079831/1‑94 (MQ=60)
                                   CTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACC                                                            >  SRR4302543.5242305/1‑94 (MQ=60)
                                   CTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACC                                                            <  SRR4302543.1606704/94‑1 (MQ=60)
                                   CTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACC                                                            >  SRR4302543.3256262/1‑94 (MQ=60)
                                    TGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCT                                                           >  SRR4302543.7156784/1‑94 (MQ=60)
                                    TGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCT                                                           <  SRR4302543.4676988/94‑1 (MQ=60)
                                    TGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCT                                                           >  SRR4302543.5330037/1‑94 (MQ=60)
                                     GCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTT                                                          <  SRR4302543.5417578/94‑1 (MQ=60)
                                     GCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTT                                                          <  SRR4302543.6463472/94‑1 (MQ=60)
                                      CTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTG                                                         <  SRR4302543.2521435/94‑1 (MQ=60)
                                      CTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTG                                                         >  SRR4302543.7585331/1‑94 (MQ=60)
                                      CTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTG                                                         >  SRR4302543.5132322/1‑94 (MQ=60)
                                      CTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTG                                                         <  SRR4302543.2740620/94‑1 (MQ=60)
                                      CTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTG                                                         >  SRR4302543.6432742/1‑94 (MQ=60)
                                       TGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGC                                                        >  SRR4302543.800575/1‑94 (MQ=60)
                                       TGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGC                                                        <  SRR4302543.3937944/94‑1 (MQ=60)
                                       TGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGC                                                        <  SRR4302543.1282977/94‑1 (MQ=60)
                                       TGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGC                                                        <  SRR4302543.3605826/94‑1 (MQ=60)
                                        GGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCG                                                       <  SRR4302543.420/94‑1 (MQ=60)
                                         GGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGG                                                      <  SRR4302543.6965774/94‑1 (MQ=60)
                                          GTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGT                                                     <  SRR4302543.378206/94‑1 (MQ=60)
                                           TCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTG                                                    <  SRR4302543.2198968/94‑1 (MQ=60)
                                            CGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGC                                                   >  SRR4302543.1085064/1‑94 (MQ=60)
                                            CGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGC                                                   <  SRR4302543.1141730/94‑1 (MQ=60)
                                            CGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGC                                                   >  SRR4302543.681993/1‑94 (MQ=60)
                                            CGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGC                                                   >  SRR4302543.1402950/1‑94 (MQ=60)
                                            CGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGC                                                   <  SRR4302543.1923131/94‑1 (MQ=60)
                                              CATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCT                                                 <  SRR4302543.1585191/94‑1 (MQ=60)
                                               ATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAaggaacctattgcggctt                                                >  SRR4302543.5751468/1‑76 (MQ=60)
                                               ATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTT                                                >  SRR4302543.5570149/1‑94 (MQ=60)
                                               ATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTT                                                <  SRR4302543.209045/94‑1 (MQ=60)
                                               ATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCGT                                                >  SRR4302543.1955210/1‑94 (MQ=60)
                                                TGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTT                                               >  SRR4302543.226480/1‑94 (MQ=60)
                                                TGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTT                                               <  SRR4302543.6967313/94‑1 (MQ=60)
                                                TGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTT                                               <  SRR4302543.5765292/94‑1 (MQ=60)
                                                TGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGGAACGCAGAAAAAAGGCACCTTtctgagctttt                                               >  SRR4302543.1977992/1‑83 (MQ=60)
                                                 GGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTC                                              <  SRR4302543.5295868/94‑1 (MQ=60)
                                                  GAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCT                                             <  SRR4302543.1590950/94‑1 (MQ=60)
                                                  GAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCT                                             <  SRR4302543.1725241/94‑1 (MQ=60)
                                                  GAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCT                                             <  SRR4302543.1725799/94‑1 (MQ=60)
                                                   AAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTT                                            <  SRR4302543.5517679/94‑1 (MQ=60)
                                                    AGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTA                                           >  SRR4302543.5397471/1‑94 (MQ=60)
                                                    AGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTA                                           >  SRR4302543.3587506/1‑94 (MQ=60)
                                                     GAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTAT                                          <  SRR4302543.1844978/94‑1 (MQ=60)
                                                     GAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTAT                                          <  SRR4302543.1844979/94‑1 (MQ=60)
                                                       GGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACGTTGCGGTGCCTTTCTTATCA                                        <  SRR4302543.3774328/94‑1 (MQ=60)
                                                       GGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCA                                        >  SRR4302543.3571420/1‑94 (MQ=60)
                                                       GGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCA                                        <  SRR4302543.3101458/94‑1 (MQ=60)
                                                       GGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCCTGCGGTGCCTTTTTTATTA                                        >  SRR4302543.1799295/1‑94 (MQ=60)
                                                       GGTCTGATTACGCCTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCA                                        <  SRR4302543.7271077/94‑1 (MQ=60)
                                                        GTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCAT                                       <  SRR4302543.1162086/94‑1 (MQ=60)
                                                           TGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCA                                    <  SRR4302543.920567/94‑1 (MQ=60)
                                                           TGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCA                                    >  SRR4302543.3671565/1‑94 (MQ=60)
                                                           TGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCA                                    <  SRR4302543.4986189/94‑1 (MQ=60)
                                                           TGATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCA                                    <  SRR4302543.4496581/94‑1 (MQ=60)
                                                            GATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAA                                   <  SRR4302543.5721169/94‑1 (MQ=60)
                                                             ATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTTTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTTTTATCATTCAAT                                  >  SRR4302543.4359479/1‑94 (MQ=60)
                                                             ATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAAT                                  <  SRR4302543.5673594/94‑1 (MQ=60)
                                                             ATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAAT                                  <  SRR4302543.351188/94‑1 (MQ=60)
                                                             ATTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAAT                                  <  SRR4302543.7809246/94‑1 (MQ=60)
                                                              TTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATA                                 <  SRR4302543.3309011/94‑1 (MQ=60)
                                                              TTACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATA                                 <  SRR4302543.6243129/94‑1 (MQ=60)
                                                               TACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATAT                                <  SRR4302543.2612248/94‑1 (MQ=60)
                                                               TACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATAT                                <  SRR4302543.2326787/94‑1 (MQ=60)
                                                               TACGCTTCATCTTACGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATAT                                >  SRR4302543.3954734/1‑94 (MQ=60)
                                                                ACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATC                               <  SRR4302543.5100918/94‑1 (MQ=60)
                                                                ACGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATC                               <  SRR4302543.1107213/94‑1 (MQ=60)
                                                                 CGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAaggaccctcttgtgtccttctttttcttttttaatc                              >  SRR4302543.7069156/1‑58 (MQ=60)
                                                                 CGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCC                              >  SRR4302543.812488/1‑94 (MQ=60)
                                                                 CGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCC                              <  SRR4302543.4911018/94‑1 (MQ=60)
                                                                 CGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCC                              >  SRR4302543.6126553/1‑94 (MQ=60)
                                                                 CGCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCCTGCGGGGGCTTTCTTTTCATTTAATATCC                              >  SRR4302543.3129777/1‑94 (MQ=60)
                                                                  GCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCA                             >  SRR4302543.7354740/1‑94 (MQ=60)
                                                                  GCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCA                             <  SRR4302543.2751662/94‑1 (MQ=60)
                                                                  GCTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCA                             <  SRR4302543.5762085/94‑1 (MQ=60)
                                                                  GCTTCATCGTCCGCGTAATTGCTGTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTAGCATTCAATATCCA                             <  SRR4302543.5762086/94‑1 (MQ=60)
                                                                   CTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCCCCTTGCGGTGCCTTTCTTATCATTCAATATCCAG                            <  SRR4302543.6914628/94‑1 (MQ=60)
                                                                   CTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATtcac                            >  SRR4302543.452359/1‑90 (MQ=60)
                                                                   CTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAG                            >  SRR4302543.1770182/1‑94 (MQ=60)
                                                                   CTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAG                            <  SRR4302543.6569125/94‑1 (MQ=60)
                                                                   CTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAG                            <  SRR4302543.6147997/94‑1 (MQ=60)
                                                                   CTTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGAGGTGCCTTTCTTATCATTttatctccag                            >  SRR4302543.1770181/1‑84 (MQ=60)
                                                                    TTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGC                           <  SRR4302543.6297465/94‑1 (MQ=60)
                                                                    TTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGC                           >  SRR4302543.2788739/1‑94 (MQ=60)
                                                                    TTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGC                           <  SRR4302543.3984509/94‑1 (MQ=60)
                                                                    TTCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGC                           >  SRR4302543.1307692/1‑94 (MQ=60)
                                                                     TCATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCG                          <  SRR4302543.6173485/94‑1 (MQ=60)
                                                                      CATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGG                         <  SRR4302543.3530911/94‑1 (MQ=60)
                                                                       ATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATTCAGCGGA                        >  SRR4302543.2978630/1‑94 (MQ=60)
                                                                       ATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGA                        >  SRR4302543.6631195/1‑94 (MQ=60)
                                                                       ATCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGA                        >  SRR4302543.6112869/1‑94 (MQ=60)
                                                                        TCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGAT                       <  SRR4302543.5266388/94‑1 (MQ=60)
                                                                        TCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGAT                       <  SRR4302543.517548/94‑1 (MQ=60)
                                                                        TCTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGGGCCTTTCTTATCATTCAATATCCAGGGGAT                       >  SRR4302543.3841118/1‑94 (MQ=60)
                                                                         CTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATC                      <  SRR4302543.5827961/94‑1 (MQ=60)
                                                                         CTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATC                      <  SRR4302543.2298344/94‑1 (MQ=60)
                                                                         CTTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATC                      >  SRR4302543.5003554/1‑94 (MQ=60)
                                                                          TTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCT                     <  SRR4302543.6271377/94‑1 (MQ=60)
                                                                          TTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCT                     <  SRR4302543.4462208/94‑1 (MQ=60)
                                                                          TTCCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCT                     <  SRR4302543.5718295/94‑1 (MQ=60)
                                                                            CCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTC                   <  SRR4302543.212327/94‑1 (MQ=60)
                                                                            CCGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTC                   <  SRR4302543.4420444/94‑1 (MQ=60)
                                                                             CGCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCT                  <  SRR4302543.7049901/94‑1 (MQ=60)
                                                                              GCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTG                 <  SRR4302543.1788591/94‑1 (MQ=60)
                                                                              GCGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTG                 <  SRR4302543.3103228/94‑1 (MQ=60)
                                                                               CGTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAACGCACCTTTCGGTGCCTTTCTTATCATTCAAAATCCAcccgatcctccga                >  SRR4302543.102582/1‑81 (MQ=60)
                                                                                GTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGGCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAA               >  SRR4302543.5808503/1‑94 (MQ=60)
                                                                                GTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAA               >  SRR4302543.5575979/1‑94 (MQ=60)
                                                                                GTAATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAA               >  SRR4302543.3746370/1‑94 (MQ=60)
                                                                                   ATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGGACCTTTCGGTGCCTTTCTTATCATTTAATATCCAGCCGATCTTCTTGAAGA            >  SRR4302543.4470333/1‑94 (MQ=60)
                                                                                   ATTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGA            <  SRR4302543.6320233/94‑1 (MQ=60)
                                                                                    TTTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAA           <  SRR4302543.2892856/94‑1 (MQ=60)
                                                                                     TTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAAT          <  SRR4302543.3651904/94‑1 (MQ=60)
                                                                                     TTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAAT          >  SRR4302543.5021463/1‑94 (MQ=60)
                                                                                     TTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAAT          <  SRR4302543.5588052/94‑1 (MQ=60)
                                                                                     TTCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCCTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAAT          >  SRR4302543.281158/1‑94 (MQ=60)
                                                                                      TCTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATA         <  SRR4302543.4569105/94‑1 (MQ=60)
                                                                                       CTTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCGCCTTGCGGTGCCTTCCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAA        <  SRR4302543.5398760/94‑1 (MQ=60)
                                                                                        TTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAAT       <  SRR4302543.4395704/94‑1 (MQ=60)
                                                                                        TTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAAT       >  SRR4302543.4917094/1‑94 (MQ=60)
                                                                                        TTTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAAGCACCTTGCGGCGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAAT       >  SRR4302543.1727171/1‑94 (MQ=60)
                                                                                         TTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATC      <  SRR4302543.689471/94‑1 (MQ=60)
                                                                                         TTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATC      <  SRR4302543.1835178/94‑1 (MQ=60)
                                                                                         TTACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATC      <  SRR4302543.836095/94‑1 (MQ=60)
                                                                                          TACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCC     <  SRR4302543.6139612/94‑1 (MQ=60)
                                                                                          TACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCC     <  SRR4302543.6083106/94‑1 (MQ=60)
                                                                                          TACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCC     <  SRR4302543.401704/94‑1 (MQ=60)
                                                                                           ACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCC    <  SRR4302543.4880348/94‑1 (MQ=60)
                                                                                           ACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCC    <  SRR4302543.5441085/94‑1 (MQ=60)
                                                                                           ACCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCC    <  SRR4302543.1925693/94‑1 (MQ=60)
                                                                                            CCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCG   >  SRR4302543.2137943/1‑94 (MQ=60)
                                                                                            CCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCG   >  SRR4302543.5430877/1‑94 (MQ=60)
                                                                                            CCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCG   <  SRR4302543.421208/94‑1 (MQ=60)
                                                                                            CCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCG   <  SRR4302543.3220715/94‑1 (MQ=60)
                                                                                            CCGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCG   <  SRR4302543.3220544/94‑1 (MQ=60)
                                                                                             TGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGG  >  SRR4302543.7284407/1‑94 (MQ=60)
                                                                                             CGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCCCCTGGCGGTGTCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGG  <  SRR4302543.5780680/94‑1 (MQ=60)
                                                                                             CGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGG  <  SRR4302543.3672456/94‑1 (MQ=60)
                                                                                             CGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGG  <  SRR4302543.84098/94‑1 (MQ=60)
                                                                                             |                                                                                             
AACAGCAGAACGGCTGGCAGGAACGTCTGCAGGCCCTGCTGGGTCGCATGGAAGAGGTCTGATTACGCTTCATCTTCCGCGTAATTTCTTTACTGTGTAGGCCAACAGGTAACGCAGAAAAAAGGCACCTTGCGGTGCCTTTCTTATCATTCAATATCCAGCGGATCTTCTGAAAGAATAATCCCGG  >  NC_000913/4116279‑4116465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑