Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,473,339	A→G	E122G (GAA→GGA)	yjgL →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,473,339	0	A	G	100.0%	892.5 / NA	282	E122G (GAA→GGA)	yjgL	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (149/133); total (149/133)

Only 100 of 295 total aligned reads displayed.

ATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATAT  >  NC_000913/4473249‑4473428

 tatGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACg                                                                                        >  2:2563534/1‑93 (MQ=255)

 tatGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACg                                                                                        <  2:7328436/93‑1 (MQ=255)

  atgatgGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGa                                                                                       <  2:6736578/93‑1 (MQ=255)

      tgGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCgg                                                                                   >  2:4646096/1‑93 (MQ=255)

       ggCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGa                                                                                  <  2:3171964/93‑1 (MQ=255)

       ggCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGa                                                                                  <  1:5842309/93‑1 (MQ=255)

        gCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGAt                                                                                 <  1:5980424/93‑1 (MQ=255)

        gCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGAt                                                                                 <  1:148918/93‑1 (MQ=255)

         cTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGAtt                                                                                >  2:727230/1‑93 (MQ=255)

         cTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGAtt                                                                                >  2:3925894/1‑93 (MQ=255)

          tCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTc                                                                               >  1:1631070/1‑93 (MQ=255)

          tCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTc                                                                               >  2:6977384/1‑93 (MQ=255)

            atatTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCAc                                                                             <  1:1986887/93‑1 (MQ=255)

             tatTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCAcc                                                                            >  1:3861249/1‑93 (MQ=255)

             tatTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCAcc                                                                            <  1:442229/93‑1 (MQ=255)

             tatTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGAGGATTCAcc                                                                            >  2:6056140/1‑93 (MQ=255)

              atTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCAccc                                                                           >  1:3137485/1‑93 (MQ=255)

               ttAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCa                                                                          >  2:3350481/1‑93 (MQ=255)

                tAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCaa                                                                         <  2:666899/93‑1 (MQ=255)

                tAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCaa                                                                         <  2:6543620/93‑1 (MQ=255)

                tAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCaa                                                                         <  1:2567852/93‑1 (MQ=255)

                tAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCaa                                                                         <  1:5707209/93‑1 (MQ=255)

                     tcTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGa                                                                    <  1:4956008/92‑1 (MQ=255)

                     ccTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGa                                                                    >  1:5126542/1‑93 (MQ=255)

                      cTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGAt                                                                   <  2:1411833/93‑1 (MQ=255)

                       tCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGAtt                                                                  >  1:6715236/1‑93 (MQ=255)

                       tCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGAtt                                                                  <  1:1574700/93‑1 (MQ=255)

                       tCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGAtt                                                                  >  1:2917088/1‑93 (MQ=255)

                       tCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGAtt                                                                  >  2:115861/1‑93 (MQ=255)

                        cATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATta                                                                 <  1:4350073/93‑1 (MQ=255)

                        cATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATta                                                                 >  2:1294847/1‑93 (MQ=255)

                          tCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATtata                                                               >  2:664519/1‑93 (MQ=255)

                          tCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATtata                                                               <  1:5151470/93‑1 (MQ=255)

                          tCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATtata                                                               >  2:5708822/1‑93 (MQ=255)

                          tCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATtata                                                               >  1:979731/1‑93 (MQ=255)

                          tCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATtata                                                               <  1:6459719/93‑1 (MQ=255)

                          tCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATtata                                                               >  1:7264316/1‑93 (MQ=255)

                            ttATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGa                                                             <  2:5160870/93‑1 (MQ=255)

                            ttATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGa                                                             <  2:7825485/93‑1 (MQ=255)

                               ttCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAAt                                                          <  2:5848939/93‑1 (MQ=255)

                               ttCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAAt                                                          >  1:2152204/1‑93 (MQ=255)

                                tCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAAtt                                                         <  2:427236/93‑1 (MQ=255)

                                tCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGACGGGATTCACCCAAGGGGATTATAGAAAtt                                                         >  1:2197746/1‑93 (MQ=255)

                                   aaaGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCa                                                      >  2:713767/1‑93 (MQ=255)

                                    acgATACTAATGCGAATGAAAAAATGAAGTGTTGCATGAATAATCCTGTAGGGGGACGAGCGGATTCACCGAAGGTGATTATAGAAATTTCAc                                                     <  1:3717584/91‑1 (MQ=255)

                                    aaGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAAtttact                                                     >  2:85405/1‑90 (MQ=255)

                                    aaGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCat                                                     >  1:7552176/1‑92 (MQ=255)

                                      gATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACtt                                                   >  2:2414455/1‑93 (MQ=255)

                                      gATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCGGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACtt                                                   <  2:1530521/93‑1 (MQ=255)

                                       aTACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACttt                                                  <  2:7695515/93‑1 (MQ=255)

                                             aTGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTa                                            <  2:5352920/93‑1 (MQ=255)

                                             aTGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTa                                            <  1:3253110/93‑1 (MQ=255)

                                               ggCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATc                                          <  1:7468358/93‑1 (MQ=255)

                                               ggCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATc                                          <  1:6118716/93‑1 (MQ=255)

                                                gCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCa                                         >  2:3017254/1‑93 (MQ=255)

                                                 cAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCac                                        <  1:1155432/93‑1 (MQ=255)

                                                 cAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCac                                        <  2:2236886/93‑1 (MQ=255)

                                                 cAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCac                                        >  1:1248275/1‑93 (MQ=255)

                                                 cAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCac                                        <  1:3312655/93‑1 (MQ=255)

                                                   aTGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCacta                                      >  1:7718077/1‑93 (MQ=255)

                                                   aTGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCacta                                      >  2:3796155/1‑93 (MQ=255)

                                                    tGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCactac                                     >  1:1341176/1‑93 (MQ=255)

                                                     gAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCactact                                    >  2:2305710/1‑93 (MQ=255)

                                                     gAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCactact                                    >  1:3534330/1‑93 (MQ=255)

                                                     gAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCactact                                    >  2:4604466/1‑93 (MQ=255)

                                                      aaaaaaTGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCActacta                                   <  1:2877434/93‑1 (MQ=255)

                                                      aaaaaaTGAAGTCTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCActacta                                   <  2:1129433/93‑1 (MQ=255)

                                                       aaaaaTGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTAt                                  <  1:4705992/93‑1 (MQ=255)

                                                       aaaaaTGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTAt                                  <  1:6677773/93‑1 (MQ=255)

                                                        aaaaTGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATg                                 >  2:1837988/1‑93 (MQ=255)

                                                        aaaaTGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATg                                 <  2:1764710/93‑1 (MQ=255)

                                                         aaaTGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATgg                                <  2:2739263/93‑1 (MQ=255)

                                                          aaTGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGAAATAATAGAAATTTCAATTTCCACTATCAATTCTATggg                               <  2:6008919/93‑1 (MQ=255)

                                                           aTGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATgggg                              <  2:2229662/93‑1 (MQ=255)

                                                            tGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGA‑TATAGAAATTTCACTTTCCACTATCACTACTATGGGGAc                            <  2:6219575/93‑1 (MQ=255)

                                                             gAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGAc                            >  1:3432768/1‑93 (MQ=255)

                                                             gAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGAc                            <  1:4668857/93‑1 (MQ=255)

                                                               aGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTc                          <  1:2471944/93‑1 (MQ=255)

                                                               aGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTc                          >  1:7391900/1‑93 (MQ=255)

                                                                 ttttACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGt                        >  1:350874/1‑93 (MQ=255)

                                                                  tttACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTc                       <  1:5465635/93‑1 (MQ=255)

                                                                    tACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCaa                     <  1:2985986/93‑1 (MQ=255)

                                                                     aCATGAATAATCCTGTAGGGGGACGAGCGGATTCTCCCCAGGTGATTATATAAATTTCACTTTTCACTATCACTATTATGTGGACTCGTCAAg                    >  1:7045526/1‑93 (MQ=255)

                                                                     aCATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAg                    >  2:1708047/1‑93 (MQ=255)

                                                                     aCATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAg                    >  2:5939400/1‑93 (MQ=255)

                                                                     aCATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAg                    <  2:3614823/93‑1 (MQ=255)

                                                                       aTGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGa                  <  1:2242092/93‑1 (MQ=255)

                                                                       aTGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGa                  >  1:1079290/1‑93 (MQ=255)

                                                                       aTGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGa                  >  2:6148636/1‑93 (MQ=255)

                                                                        tGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGAc                 >  1:4077786/1‑93 (MQ=255)

                                                                         gAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACa                >  2:6922154/1‑93 (MQ=255)

                                                                         gAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACa                >  1:6234223/1‑93 (MQ=255)

                                                                           ataatCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATa              >  2:4963581/1‑93 (MQ=255)

                                                                              atCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAg           <  1:1678919/93‑1 (MQ=255)

                                                                                  tGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACAATCACTACTATGGGGACTCGTCAAGGAAATACAGccct       >  2:1056241/1‑91 (MQ=255)

                                                                                   gTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCAtt      >  1:552365/1‑93 (MQ=255)

                                                                                   gTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCAtt      >  2:3574970/1‑93 (MQ=255)

                                                                                    tAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATta     >  2:638171/1‑93 (MQ=255)

                                                                                     aGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATtat    >  2:7908316/1‑93 (MQ=255)

                                                                                      ggggGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATtata   <  2:4089992/93‑1 (MQ=255)

ATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATAT  >  NC_000913/4473249‑4473428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATATTTC  >  NC_000913/4473246‑4473431

GAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGG                                                                                              <  SRR4302543.7288071/94‑1 (MQ=60)

GAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGG                                                                                              <  SRR4302543.6695359/94‑1 (MQ=60)

GAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGG                                                                                              <  SRR4302543.330875/94‑1 (MQ=60)

GAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGG                                                                                              >  SRR4302543.6713677/1‑94 (MQ=60)

 AAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGA                                                                                             >  SRR4302543.2764182/1‑94 (MQ=60)

 AAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGA                                                                                             >  SRR4302543.5476609/1‑94 (MQ=60)

  AATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGAC                                                                                            <  SRR4302543.4748160/94‑1 (MQ=60)

   ATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACG                                                                                           >  SRR4302543.4914784/1‑94 (MQ=60)

   ATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACG                                                                                           >  SRR4302543.4914783/1‑94 (MQ=60)

     ATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAG                                                                                         >  SRR4302543.2888713/1‑94 (MQ=60)

      TGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGC                                                                                        <  SRR4302543.7463047/94‑1 (MQ=60)

      TGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGC                                                                                        <  SRR4302543.2947476/94‑1 (MQ=60)

      TGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGC                                                                                        >  SRR4302543.7443214/1‑94 (MQ=60)

         TGGCTCATATTAAGACCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGAGGGACGAGCGGA                                                                                     >  SRR4302543.2208639/1‑94 (MQ=60)

          GGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGAT                                                                                    <  SRR4302543.6920458/94‑1 (MQ=60)

          GGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGAT                                                                                    <  SRR4302543.5895461/94‑1 (MQ=60)

          GGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGAT                                                                                    >  SRR4302543.5029126/1‑94 (MQ=60)

           GCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATT                                                                                   <  SRR4302543.150209/94‑1 (MQ=60)

           GCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATT                                                                                   <  SRR4302543.6035213/94‑1 (MQ=60)

           GCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATT                                                                                   <  SRR4302543.6035215/94‑1 (MQ=60)

           GCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATT                                                                                   >  SRR4302543.4719847/1‑94 (MQ=60)

            CTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTC                                                                                  >  SRR4302543.1645610/1‑94 (MQ=60)

            CTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTC                                                                                  >  SRR4302543.2129054/1‑94 (MQ=60)

            CTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTC                                                                                  <  SRR4302543.2110445/94‑1 (MQ=60)

             TCATATTAAGTCCTCATCTTGTTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCA                                                                                 <  SRR4302543.1205069/94‑1 (MQ=60)

               ATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACC                                                                               >  SRR4302543.3546758/1‑94 (MQ=60)

               ATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACC                                                                               <  SRR4302543.2004696/94‑1 (MQ=60)

               ATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACC                                                                               >  SRR4302543.3895355/1‑94 (MQ=60)

               ATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACC                                                                               >  SRR4302543.1535002/1‑94 (MQ=60)

                TATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCC                                                                              >  SRR4302543.3165705/1‑94 (MQ=60)

                TATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCC                                                                              <  SRR4302543.446364/94‑1 (MQ=60)

                TATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCC                                                                              <  SRR4302543.446365/94‑1 (MQ=60)

                 ATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCA                                                                             >  SRR4302543.1134163/1‑94 (MQ=60)

                  TTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAA                                                                            >  SRR4302543.7222495/1‑94 (MQ=60)

                   TAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAG                                                                           <  SRR4302543.2591296/94‑1 (MQ=60)

                   TAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAG                                                                           <  SRR4302543.5759268/94‑1 (MQ=60)

                    TAGTCCTCATTTTATTCTAAAGATACTAATGGCAATGAAAAAATGAACTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGG                                                                          <  SRR4302543.1778748/94‑1 (MQ=60)

                     AGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGT                                                                         >  SRR4302543.2921625/1‑94 (MQ=60)

                      GTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTG                                                                        <  SRR4302543.6771874/94‑1 (MQ=60)

                       TCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGA                                                                       >  SRR4302543.5172884/1‑94 (MQ=60)

                        TCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGAT                                                                      <  SRR4302543.5001134/94‑1 (MQ=60)

                         CTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATT                                                                     >  SRR4302543.2943594/1‑94 (MQ=60)

                         CTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATT                                                                     >  SRR4302543.6778700/1‑94 (MQ=60)

                         CTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGCGATT                                                                     >  SRR4302543.6778699/1‑94 (MQ=60)

                          TCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTA                                                                    <  SRR4302543.1588752/94‑1 (MQ=60)

                          TCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTA                                                                    <  SRR4302543.1588753/94‑1 (MQ=60)

                          TCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTA                                                                    >  SRR4302543.3303369/1‑94 (MQ=60)

                           CATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTAT                                                                   <  SRR4302543.7666084/94‑1 (MQ=60)

                           CATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTAT                                                                   <  SRR4302543.4389501/94‑1 (MQ=60)

                            ATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATA                                                                  >  SRR4302543.7334503/1‑94 (MQ=60)

                            ATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATA                                                                  >  SRR4302543.988376/1‑94 (MQ=60)

                            ATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATA                                                                  >  SRR4302543.3089034/1‑94 (MQ=60)

                            ATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATA                                                                  >  SRR4302543.4103517/1‑94 (MQ=60)

                            ATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATA                                                                  >  SRR4302543.3766862/1‑94 (MQ=60)

                             TCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAG                                                                 <  SRR4302543.5198029/94‑1 (MQ=60)

                             TCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAG                                                                 <  SRR4302543.5198028/94‑1 (MQ=60)

                             TCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAG                                                                 <  SRR4302543.6520583/94‑1 (MQ=60)

                              CTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGA                                                                >  SRR4302543.2261618/1‑94 (MQ=60)

                                TATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAA                                                              <  SRR4302543.3315881/94‑1 (MQ=60)

                                 ATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAAT                                                             >  SRR4302543.2171474/1‑94 (MQ=60)

                                 ATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAAT                                                             >  SRR4302543.1283185/1‑94 (MQ=60)

                                 ATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAAT                                                             <  SRR4302543.441750/94‑1 (MQ=60)

                                  TTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATT                                                            >  SRR4302543.5505423/1‑94 (MQ=60)

                                  TTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATT                                                            >  SRR4302543.2217505/1‑94 (MQ=60)

                                  TTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGACGGGATTCACCCAAGGGGATTATAGAAATT                                                            >  SRR4302543.2217507/1‑94 (MQ=60)

                                   TCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTT                                                           >  SRR4302543.3424000/1‑94 (MQ=60)

                                    CTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTC                                                          <  SRR4302543.3849903/94‑1 (MQ=60)

                                    CTAAAGATACTAATGGCAATGAAAAAATGAAGTGTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTC                                                          <  SRR4302543.884515/94‑1 (MQ=60)

                                     TAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCA                                                         <  SRR4302543.7366349/94‑1 (MQ=60)

                                     TAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCA                                                         <  SRR4302543.5175400/94‑1 (MQ=60)

                                      AAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCAT                                                        >  SRR4302543.7624104/1‑94 (MQ=60)

                                      AAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCAC                                                        >  SRR4302543.7624105/1‑94 (MQ=60)

                                       ACGATACTAATGCGAATGAAAAAATGAAGTGTTGCATGAATAATCCTGTAGGGGGACGAGCGGATTCACCGAAGGTGATTATAGAAATTTCACG                                                       <  SRR4302543.3750275/94‑1 (MQ=60)

                                          ATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTC                                                    <  SRR4302543.1925141/94‑1 (MQ=60)

                                            ACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCA                                                  >  SRR4302543.5217445/1‑94 (MQ=60)

                                             CTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCAC                                                 >  SRR4302543.2499049/1‑94 (MQ=60)

                                              TAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACT                                                <  SRR4302543.2245353/94‑1 (MQ=60)

                                                ATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCTCTAT                                              <  SRR4302543.1591338/94‑1 (MQ=60)

                                                ATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTAT                                              <  SRR4302543.3564414/94‑1 (MQ=60)

                                                ATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTAT                                              <  SRR4302543.3282522/94‑1 (MQ=60)

                                                ATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTAT                                              >  SRR4302543.6254122/1‑94 (MQ=60)

                                                ATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTAT                                              >  SRR4302543.1663120/1‑94 (MQ=60)

                                                 TGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATC                                             <  SRR4302543.3726808/94‑1 (MQ=60)

                                                  GGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCA                                            <  SRR4302543.7539883/94‑1 (MQ=60)

                                                  GGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCA                                            <  SRR4302543.6176671/94‑1 (MQ=60)

                                                  GGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCA                                            <  SRR4302543.7539881/94‑1 (MQ=60)

                                                  GGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCA                                            >  SRR4302543.3574333/1‑94 (MQ=60)

                                                   GCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCAC                                           >  SRR4302543.1259477/1‑94 (MQ=60)

                                                    CAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACT                                          <  SRR4302543.1165947/94‑1 (MQ=60)

                                                    CAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACT                                          <  SRR4302543.3342558/94‑1 (MQ=60)

                                                    CAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACT                                          >  SRR4302543.148605/1‑94 (MQ=60)

                                                    CAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACT                                          <  SRR4302543.4696220/94‑1 (MQ=60)

                                                     AATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTA                                         >  SRR4302543.7791065/1‑94 (MQ=60)

                                                      ATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTAC                                        >  SRR4302543.1353148/1‑94 (MQ=60)

                                                      ATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTAC                                        >  SRR4302543.1353152/1‑94 (MQ=60)

                                                      ATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTAC                                        >  SRR4302543.5875095/1‑94 (MQ=60)

                                                       TGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACT                                       <  SRR4302543.6701489/94‑1 (MQ=60)

                                                       TGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACT                                       >  SRR4302543.3565779/1‑94 (MQ=60)

                                                        GAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTA                                      >  SRR4302543.997746/1‑94 (MQ=60)

                                                         AAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTAT                                     <  SRR4302543.2903619/94‑1 (MQ=60)

                                                         AAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTAT                                     >  SRR4302543.6342191/1‑94 (MQ=60)

                                                          AAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATG                                    <  SRR4302543.4748989/94‑1 (MQ=60)

                                                          AAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATG                                    <  SRR4302543.2491131/94‑1 (MQ=60)

                                                          AAAAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATG                                    <  SRR4302543.6740815/94‑1 (MQ=60)

                                                           AAAATGAAGTTCTACATGAATAATCCTGTAGGGGCACGAGCGGATTCACCCAAGGTGATTATAGAATTTTCACTTTCCACTATCACTACTATGG                                   <  SRR4302543.3511940/94‑1 (MQ=60)

                                                            AAATGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGG                                  >  SRR4302543.5537395/1‑94 (MQ=60)

                                                               TGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGAC                               <  SRR4302543.2972250/94‑1 (MQ=60)

                                                               TGAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGAC                               >  SRR4302543.3463488/1‑94 (MQ=60)

                                                                GAAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACT                              <  SRR4302543.4711410/94‑1 (MQ=60)

                                                                 AAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTC                             >  SRR4302543.7462901/1‑94 (MQ=60)

                                                                 AAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTC                             >  SRR4302543.4217352/1‑94 (MQ=60)

                                                                 AAGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTC                             >  SRR4302543.4217351/1‑94 (MQ=60)

                                                                  AGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCG                            >  SRR4302543.3400619/1‑94 (MQ=60)

                                                                  AGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCG                            <  SRR4302543.2494263/94‑1 (MQ=60)

                                                                  AGTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCG                            >  SRR4302543.5606849/1‑94 (MQ=60)

                                                                   GTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGT                           >  SRR4302543.354119/1‑94 (MQ=60)

                                                                   GTTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATCATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGT                           >  SRR4302543.5519191/1‑94 (MQ=60)

                                                                   ATTTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGT                           <  SRR4302543.1398853/94‑1 (MQ=60)

                                                                     TTTACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCA                         <  SRR4302543.5515159/94‑1 (MQ=60)

                                                                       TACATGAATAATCCTGTAGGGGGACGAGCGGATTCTCCCCAGGTGATTATATAAATTTCACTTTTCACTATCACTATTATGTGGACTCGTCAAG                       >  SRR4302543.7113747/1‑94 (MQ=60)

                                                                       TACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAG                       <  SRR4302543.3013102/94‑1 (MQ=60)

                                                                       TACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACGATGGGGACTCGTCAAG                       >  SRR4302543.7113746/1‑94 (MQ=60)

                                                                        ACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGG                      >  SRR4302543.5161698/1‑94 (MQ=60)

                                                                        ACATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGG                      >  SRR4302543.5901006/1‑94 (MQ=60)

                                                                         CATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGA                     >  SRR4302543.1088995/1‑94 (MQ=60)

                                                                         CATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGA                     <  SRR4302543.6330592/94‑1 (MQ=60)

                                                                          ATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGAC                    >  SRR4302543.1257806/1‑94 (MQ=60)

                                                                          ATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGAC                    >  SRR4302543.4114341/1‑94 (MQ=60)

                                                                          ATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGAC                    >  SRR4302543.3030369/1‑94 (MQ=60)

                                                                          ATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGAC                    <  SRR4302543.2262423/94‑1 (MQ=60)

                                                                          ATGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGAC                    <  SRR4302543.7545916/94‑1 (MQ=60)

                                                                           TGAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACA                   >  SRR4302543.6293062/1‑94 (MQ=60)

                                                                            GAATAATCCTGTATGGGGGCGATCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACAT                  <  SRR4302543.2542847/94‑1 (MQ=60)

                                                                            GAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACAT                  <  SRR4302543.5675778/94‑1 (MQ=60)

                                                                            GAATAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTACGGGGACTCGTCAAGGACAT                  >  SRR4302543.6064800/1‑94 (MQ=60)

                                                                               TAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACA               <  SRR4302543.2359508/94‑1 (MQ=60)

                                                                               TAATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACA               <  SRR4302543.2808563/94‑1 (MQ=60)

                                                                                AATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAG              <  SRR4302543.1520095/94‑1 (MQ=60)

                                                                                AATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAG              >  SRR4302543.6291979/1‑94 (MQ=60)

                                                                                AATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAG              <  SRR4302543.5951980/94‑1 (MQ=60)

                                                                                AATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAG              <  SRR4302543.4435288/94‑1 (MQ=60)

                                                                                 ATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGC             >  SRR4302543.717821/1‑94 (MQ=60)

                                                                                 ATCCTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGC             <  SRR4302543.1693970/94‑1 (MQ=60)

                                                                                    CTGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCAT          >  SRR4302543.5822931/1‑94 (MQ=60)

                                                                                    CTGTAGGGGGACGAGCGGATTCACCCAAGGAGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCAT          >  SRR4302543.3271098/1‑94 (MQ=60)

                                                                                     TGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATT         >  SRR4302543.557443/1‑94 (MQ=60)

                                                                                     TGTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATT         <  SRR4302543.2904791/94‑1 (MQ=60)

                                                                                      GTAGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTA        <  SRR4302543.3250906/94‑1 (MQ=60)

                                                                                       TAGGGGGGCGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTAT       <  SRR4302543.1651135/94‑1 (MQ=60)

                                                                                        AGGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATA      >  SRR4302543.4087123/1‑94 (MQ=60)

                                                                                         GGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATAT     >  SRR4302543.4733374/1‑94 (MQ=60)

                                                                                         GGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATAT     <  SRR4302543.7594682/94‑1 (MQ=60)

                                                                                         GGGGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATAT     <  SRR4302543.7982122/94‑1 (MQ=60)

                                                                                           GGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATATTT   <  SRR4302543.6157386/94‑1 (MQ=60)

                                                                                           GGGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATATTT   <  SRR4302543.6032511/94‑1 (MQ=60)

                                                                                            GGACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATATTTC  <  SRR4302543.133377/94‑1 (MQ=60)

GAAATATGATGGCTCATATTAAGTCCTCATCTTATTCTAAAGATACTAATGGCAATGAAAAAATGAAGTTTTACATGAATAATCCTGTAGGGGAACGAGCGGATTCACCCAAGGTGATTATAGAAATTTCACTTTCCACTATCACTACTATGGGGACTCGTCAAGGACATACAGCCATTATATTTC  >  NC_000913/4473246‑4473431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`