Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,476,619	A→G	V91A (GTG→GCG)	b4256 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,476,619	0	A	G	100.0%	1116.7 / NA	349	V91A (GTG→GCG)	b4256	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (181/168); total (181/168)

Only 100 of 369 total aligned reads displayed.

ATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAA  >  NC_000913/4476529‑4476708

 tCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCtt                                                                                        <  1:3785983/93‑1 (MQ=255)

     gCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTcaca                                                                                    >  1:4218136/1‑93 (MQ=255)

      cATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACaa                                                                                   <  2:1374314/93‑1 (MQ=255)

       aTAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAAt                                                                                  >  2:5891731/1‑93 (MQ=255)

       aTAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAAAATCCGCGCTTCACAAt                                                                                  >  1:3199980/1‑93 (MQ=255)

        tAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATc                                                                                 <  2:1512891/93‑1 (MQ=255)

        tAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATc                                                                                 >  1:1476647/1‑93 (MQ=255)

        tAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATc                                                                                 <  1:835345/93‑1 (MQ=255)

         aaaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCg                                                                                <  1:7290426/93‑1 (MQ=255)

         aaaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTGTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCg                                                                                <  1:6674662/93‑1 (MQ=255)

          aaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGCGTTTGCGCAACATCCGCGCTTCACAATTGa                                                                               >  2:2474624/1‑93 (MQ=255)

          aaCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGa                                                                               >  1:5799500/1‑93 (MQ=255)

           aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCTTTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAc                                                                              <  2:5985890/93‑1 (MQ=255)

           aCAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGAc                                                                              >  2:2926960/1‑93 (MQ=255)

            cAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACa                                                                             <  1:7762498/93‑1 (MQ=255)

            cAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACa                                                                             <  2:2663671/93‑1 (MQ=255)

            cAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATGTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACa                                                                             <  1:991944/93‑1 (MQ=255)

             aaaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAt                                                                            <  2:5347215/93‑1 (MQ=255)

             aaaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAt                                                                            <  2:7286457/93‑1 (MQ=255)

             aaaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAt                                                                            >  2:6509917/1‑93 (MQ=255)

              aaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATg                                                                           >  2:7918574/1‑93 (MQ=255)

              aaaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATg                                                                           <  2:2204720/93‑1 (MQ=255)

               aaCGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATgg                                                                          <  1:541300/93‑1 (MQ=255)

                acgtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGc                                                                         >  1:2311675/1‑93 (MQ=255)

                  gtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGccc                                                                       <  2:3118240/93‑1 (MQ=255)

                  gtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGccc                                                                       >  1:1259563/1‑93 (MQ=255)

                  gtacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGccc                                                                       >  2:7836168/1‑93 (MQ=255)

                  gtacgtTGTCAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGccc                                                                       <  2:3314105/93‑1 (MQ=255)

                   tacgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCg                                                                      <  2:5039524/93‑1 (MQ=255)

                     cgtTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTg                                                                    >  1:6806782/1‑93 (MQ=255)

                       ttgttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCa                                                                  >  2:550701/1‑93 (MQ=255)

                          ttAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGcc                                                               <  1:4839241/93‑1 (MQ=255)

                           tAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCa                                                              >  1:6656298/1‑93 (MQ=255)

                           tAATGTTCGAAGGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCa                                                              <  2:7090706/93‑1 (MQ=255)

                             aTGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAg                                                            <  1:3985211/93‑1 (MQ=255)

                              tGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAgc                                                           <  1:2450353/93‑1 (MQ=255)

                                ttCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAgcgc                                                         <  1:3479821/93‑1 (MQ=255)

                                ttCGAATGCCCGCGAGATGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCCCACTTCACAATCGACATGACCCCTGCAGCAAAgcgc                                                         >  2:6671490/1‑93 (MQ=255)

                                 tCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCa                                                        >  2:885619/1‑93 (MQ=255)

                                   gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGGGCATa                                                      >  2:585642/1‑93 (MQ=255)

                                   gAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATa                                                      >  2:752915/1‑93 (MQ=255)

                                    aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAg                                                     <  2:2299426/93‑1 (MQ=255)

                                    aaTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAg                                                     >  1:5702830/1‑93 (MQ=255)

                                     aTGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGt                                                    <  2:3765745/93‑1 (MQ=255)

                                      tGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTc                                                   >  2:4761982/1‑93 (MQ=255)

                                          cgcnANTTNAACACGCGGGCATTTNTTTANAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGata                                               <  2:4291382/93‑1 (MQ=255)

                                          cgcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGata                                               <  2:3400580/93‑1 (MQ=255)

                                          cgcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGata                                               >  1:5587496/1‑93 (MQ=255)

                                          cgcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGata                                               <  1:3346918/93‑1 (MQ=255)

                                           gcgAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGatat                                              >  1:5210475/1‑93 (MQ=255)

                                             gAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGc                                            >  2:2777223/1‑93 (MQ=255)

                                              aGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCt                                           >  1:6291516/1‑93 (MQ=255)

                                               gTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTc                                          >  2:1101411/1‑93 (MQ=255)

                                               gTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTc                                          >  2:4048352/1‑93 (MQ=255)

                                                ttGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCa                                         >  2:1654228/1‑93 (MQ=255)

                                                tgaaaCACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTTGATATGCTCa                                         <  2:2873759/90‑1 (MQ=255)

                                                 tGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCaa                                        >  2:5162604/1‑93 (MQ=255)

                                                   aaCACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAg                                      >  1:4321717/1‑93 (MQ=255)

                                                    acacGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGc                                     >  1:6524879/1‑93 (MQ=255)

                                                    acacGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGc                                     >  1:4060181/1‑93 (MQ=255)

                                                     cacGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGcc                                    >  2:191317/1‑93 (MQ=255)

                                                     cacGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGcc                                    <  2:4138821/93‑1 (MQ=255)

                                                       cgcgGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCACAGCCCa                                  >  2:545575/1‑93 (MQ=255)

                                                        gcgGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCaa                                 >  2:6295658/1‑93 (MQ=255)

                                                         cgGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCaaa                                >  2:4209071/1‑93 (MQ=255)

                                                         cgGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCaaa                                <  2:4388628/93‑1 (MQ=255)

                                                         cgGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCaaa                                <  1:465165/93‑1 (MQ=255)

                                                          gggCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAt                               <  2:1802699/93‑1 (MQ=255)

                                                           ggCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATg                              >  2:6064728/1‑93 (MQ=255)

                                                           ggCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATg                              >  2:6952526/1‑93 (MQ=255)

                                                            gCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGc                             >  1:2037138/1‑93 (MQ=255)

                                                            gCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGc                             <  1:1035729/93‑1 (MQ=255)

                                                               tttttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCa                          >  1:6444569/1‑93 (MQ=255)

                                                                  ttttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATaa                       >  1:6979102/1‑93 (MQ=255)

                                                                   tttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATaaa                      >  1:1103576/1‑93 (MQ=255)

                                                                    ttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGGCCAAATGCTCATAAAg                     >  2:780211/1‑93 (MQ=255)

                                                                    ttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAg                     <  1:1651525/93‑1 (MQ=255)

                                                                    ttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAg                     <  1:5346913/93‑1 (MQ=255)

                                                                    ttAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAg                     >  1:751809/1‑93 (MQ=255)

                                                                     tAGAGTTCGCGGAACATGCCCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGAGATGCTCAAAGCCCAAATGCTCATAAAgc                    <  1:6336961/93‑1 (MQ=255)

                                                                      agagTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAgcg                   >  1:6171378/1‑93 (MQ=255)

                                                                      agagTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAgcg                   <  1:4464317/93‑1 (MQ=255)

                                                                       gagTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCGCAAATGCTCATAAAgcgc                  >  1:238941/1‑93 (MQ=255)

                                                                         gTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCaa                >  1:2930247/1‑93 (MQ=255)

                                                                          ttCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCaag               >  2:318501/1‑92 (MQ=255)

                                                                           tCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATg              >  1:7410121/1‑93 (MQ=255)

                                                                           tCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATg              <  1:281550/93‑1 (MQ=255)

                                                                            cgcgCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATgg             >  1:7141090/1‑93 (MQ=255)

                                                                            cgcgCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATgg             <  1:595285/93‑1 (MQ=255)

                                                                               gcagcaGCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCtt          <  1:6402955/93‑1 (MQ=255)

                                                                               gcAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAACGCCCAAATGCTCATAAAGCGCAATGGCtt          >  1:3702241/1‑93 (MQ=255)

                                                                               gcAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCtt          >  2:2030874/1‑93 (MQ=255)

                                                                                cAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTc         >  1:3921615/1‑93 (MQ=255)

                                                                                 aaCATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTcc        >  2:4942192/1‑93 (MQ=255)

                                                                                 aaCATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTcc        >  2:5408388/1‑93 (MQ=255)

                                                                                  aCATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCt       >  1:2579916/1‑93 (MQ=255)

                                                                                     tCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTa    >  2:1227627/1‑93 (MQ=255)

                                                                                     tCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTa    <  2:1831723/93‑1 (MQ=255)

                                                                                       cgcgCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTaaa  <  2:5546764/93‑1 (MQ=255)

                                                                                       cgcgCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGACATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTaaa  <  2:4672167/93‑1 (MQ=255)

ATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAA  >  NC_000913/4476529‑4476708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  >  NC_000913/4476526‑4476712

CACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCG                                                                                               <  SRR4302543.6114496/94‑1 (MQ=60)

  CATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCT                                                                                             <  SRR4302543.7839479/94‑1 (MQ=60)

  CATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCT                                                                                             >  SRR4302543.6424396/1‑94 (MQ=60)

    TCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTC                                                                                           <  SRR4302543.3819335/94‑1 (MQ=60)

     CCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCC                                                                                          >  SRR4302543.6875790/1‑94 (MQ=60)

     CCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCA                                                                                          <  SRR4302543.3984221/94‑1 (MQ=60)

      CGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCAC                                                                                         >  SRR4302543.2415469/1‑94 (MQ=60)

       GGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACA                                                                                        >  SRR4302543.4256377/1‑94 (MQ=60)

       GGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACA                                                                                        >  SRR4302543.2793852/1‑94 (MQ=60)

        GCATAAACAAAACGTACGTTTTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAA                                                                                       <  SRR4302543.5628401/94‑1 (MQ=60)

        GCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAA                                                                                       <  SRR4302543.1309851/94‑1 (MQ=60)

        GCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAA                                                                                       >  SRR4302543.2359233/1‑94 (MQ=60)

         CATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAAT                                                                                      <  SRR4302543.4385072/94‑1 (MQ=60)

         CATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAAAATCCGCGCTTCACAAT                                                                                      >  SRR4302543.3228835/1‑94 (MQ=60)

          ATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATC                                                                                     >  SRR4302543.2533238/1‑94 (MQ=60)

          ATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATC                                                                                     >  SRR4302543.1489953/1‑94 (MQ=60)

          ATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATC                                                                                     <  SRR4302543.5580902/94‑1 (MQ=60)

          ATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATC                                                                                     >  SRR4302543.3134296/1‑94 (MQ=60)

           TAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCG                                                                                    >  SRR4302543.1634439/1‑94 (MQ=60)

           TAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCG                                                                                    <  SRR4302543.842719/94‑1 (MQ=60)

            AAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGA                                                                                   <  SRR4302543.6737678/94‑1 (MQ=60)

            AAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGA                                                                                   <  SRR4302543.7360794/94‑1 (MQ=60)

            AAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGA                                                                                   >  SRR4302543.5852252/1‑94 (MQ=60)

            AAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTGTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGA                                                                                   <  SRR4302543.6737679/94‑1 (MQ=60)

               CAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAT                                                                                <  SRR4302543.6572706/94‑1 (MQ=60)

               CAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAT                                                                                >  SRR4302543.4714757/1‑94 (MQ=60)

               CAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAT                                                                                <  SRR4302543.7835753/94‑1 (MQ=60)

               CAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATGTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACAT                                                                                <  SRR4302543.1000700/94‑1 (MQ=60)

                AAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATG                                                                               >  SRR4302543.6228384/1‑94 (MQ=60)

                 AAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGG                                                                              <  SRR4302543.583137/94‑1 (MQ=60)

                  AACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGC                                                                             >  SRR4302543.2332710/1‑94 (MQ=60)

                  AACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGC                                                                             <  SRR4302543.546308/94‑1 (MQ=60)

                   ACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCC                                                                            >  SRR4302543.2280085/1‑94 (MQ=60)

                   ACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCC                                                                            >  SRR4302543.2842964/1‑94 (MQ=60)

                    CGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCC                                                                           >  SRR4302543.1270832/1‑94 (MQ=60)

                     GTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCG                                                                          >  SRR4302543.3756170/1‑94 (MQ=60)

                      TACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGT                                                                         <  SRR4302543.5875742/94‑1 (MQ=60)

                      TACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGT                                                                         <  SRR4302543.880174/94‑1 (MQ=60)

                      TACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGT                                                                         >  SRR4302543.1892343/1‑94 (MQ=60)

                       ACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTG                                                                        <  SRR4302543.6496385/94‑1 (MQ=60)

                       ACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTG                                                                        >  SRR4302543.6871050/1‑94 (MQ=60)

                       ACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTG                                                                        >  SRR4302543.6871049/1‑94 (MQ=60)

                       ACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTG                                                                        >  SRR4302543.6724757/1‑94 (MQ=60)

                       ACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTG                                                                        >  SRR4302543.5263730/1‑94 (MQ=60)

                        CGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGC                                                                       >  SRR4302543.6386646/1‑94 (MQ=60)

                        CGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGC                                                                       <  SRR4302543.318732/94‑1 (MQ=60)

                         GTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCG                                                                      >  SRR4302543.235679/1‑94 (MQ=60)

                         GTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCA                                                                      >  SRR4302543.438884/1‑94 (MQ=60)

                         GTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCA                                                                      >  SRR4302543.5465651/1‑94 (MQ=60)

                         GTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCA                                                                      >  SRR4302543.588221/1‑94 (MQ=60)

                           TGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGC                                                                    >  SRR4302543.6640560/1‑94 (MQ=60)

                           TGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGC                                                                    >  SRR4302543.7854753/1‑94 (MQ=60)

                           TGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGC                                                                    >  SRR4302543.5908991/1‑94 (MQ=60)

                            GTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCAGAATCGACATGGCCCGTGCAGCC                                                                   >  SRR4302543.7550964/1‑94 (MQ=60)

                             TTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  <  SRR4302543.4883373/94‑1 (MQ=60)

                             TTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  >  SRR4302543.2548558/1‑94 (MQ=60)

                             TTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCA                                                                  >  SRR4302543.6719143/1‑94 (MQ=60)

                               AATGTTCGAATGGCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAG                                                                >  SRR4302543.7859114/1‑94 (MQ=60)

                               AATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAG                                                                <  SRR4302543.3669539/94‑1 (MQ=60)

                               AATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAG                                                                <  SRR4302543.1840960/94‑1 (MQ=60)

                                ATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGC                                                               >  SRR4302543.754925/1‑94 (MQ=60)

                                ATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGC                                                               <  SRR4302543.4020578/94‑1 (MQ=60)

                                 TGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCG                                                              <  SRR4302543.2432180/94‑1 (MQ=60)

                                 TGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCG                                                              <  SRR4302543.6061319/94‑1 (MQ=60)

                                 TGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCG                                                              <  SRR4302543.2472457/94‑1 (MQ=60)

                                  GTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGC                                                             >  SRR4302543.5781935/1‑94 (MQ=60)

                                  GTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGC                                                             >  SRR4302543.6253251/1‑94 (MQ=60)

                                  GTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTCCACAATCGACATGGCCCGGGCAGCCAAGCGC                                                             >  SRR4302543.2558851/1‑94 (MQ=60)

                                   TTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCA                                                            <  SRR4302543.3510990/94‑1 (MQ=60)

                                   TTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCA                                                            <  SRR4302543.3511206/94‑1 (MQ=60)

                                     TGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATA                                                          <  SRR4302543.6423840/94‑1 (MQ=60)

                                     CGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATA                                                          >  SRR4302543.3032773/1‑94 (MQ=60)

                                      GAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAG                                                         >  SRR4302543.5754845/1‑94 (MQ=60)

                                      GAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAG                                                         <  SRR4302543.1122402/94‑1 (MQ=60)

                                      GAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATAGCCCGTGACGCCAAGCGCctac                                                         >  SRR4302543.5754844/1‑90 (MQ=60)

                                       AATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGT                                                        >  SRR4302543.7301173/1‑94 (MQ=60)

                                        ATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTC                                                       <  SRR4302543.3734811/94‑1 (MQ=60)

                                        ATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTC                                                       >  SRR4302543.5655868/1‑94 (MQ=60)

                                         TGCCTGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCG                                                      <  SRR4302543.3771404/94‑1 (MQ=60)

                                         TGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCG                                                      <  SRR4302543.7085379/94‑1 (MQ=60)

                                         TGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCG                                                      <  SRR4302543.2923336/94‑1 (MQ=60)

                                         TGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCG                                                      <  SRR4302543.190188/94‑1 (MQ=60)

                                           CCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGAT                                                    >  SRR4302543.3244603/1‑94 (MQ=60)

                                           CCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGAT                                                    <  SRR4302543.6268635/94‑1 (MQ=60)

                                            CCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATA                                                   >  SRR4302543.2467140/1‑94 (MQ=60)

                                            CCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATA                                                   >  SRR4302543.5638394/1‑94 (MQ=60)

                                             CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATAT                                                  >  SRR4302543.5257424/1‑94 (MQ=60)

                                             CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATAT                                                  <  SRR4302543.3377052/94‑1 (MQ=60)

                                             CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATAT                                                  <  SRR4302543.6643668/94‑1 (MQ=60)

                                             CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATAT                                                  <  SRR4302543.6643667/94‑1 (MQ=60)

                                             CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATAT                                                  <  SRR4302543.6109816/94‑1 (MQ=60)

                                             CGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATAT                                                  <  SRR4302543.1291454/94‑1 (MQ=60)

                                                GAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCT                                               >  SRR4302543.6350751/1‑94 (MQ=60)

                                                GAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCT                                               <  SRR4302543.2774146/94‑1 (MQ=60)

                                                 AGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTC                                              >  SRR4302543.7125544/1‑94 (MQ=60)

                                                 AGTTGAACACGCGAGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTC                                              >  SRR4302543.5151164/1‑94 (MQ=60)

                                                  GTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCA                                             >  SRR4302543.1352693/1‑94 (MQ=60)

                                                    TGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAA                                           <  SRR4302543.1543894/94‑1 (MQ=60)

                                                     GAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAG                                          >  SRR4302543.399852/1‑94 (MQ=60)

                                                     GAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAG                                          >  SRR4302543.4360957/1‑94 (MQ=60)

                                                     GAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAG                                          <  SRR4302543.6767897/94‑1 (MQ=60)

                                                      AACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGCCATGGCCCGTGCAGCCACGCGCATAGTCGATATGCTCAAAGC                                         >  SRR4302543.6586317/1‑94 (MQ=60)

                                                      AACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGC                                         >  SRR4302543.6586316/1‑94 (MQ=60)

                                                      AACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGC                                         >  SRR4302543.4096541/1‑94 (MQ=60)

                                                        CACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCC                                       <  SRR4302543.4794370/94‑1 (MQ=60)

                                                        CACGCGGGCATTTTTCTACAGTTCGCGCAACAGCCGCGCTTCACAATCGACATGACCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCC                                       <  SRR4302543.1358166/94‑1 (MQ=60)

                                                          CGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAA                                     >  SRR4302543.7458921/1‑94 (MQ=60)

                                                          CGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAA                                     <  SRR4302543.3826104/94‑1 (MQ=60)

                                                           GCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAA                                    >  SRR4302543.7412184/1‑94 (MQ=60)

                                                            CGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAT                                   <  SRR4302543.469494/94‑1 (MQ=60)

                                                            CGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAT                                   <  SRR4302543.4061851/94‑1 (MQ=60)

                                                            CGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAT                                   <  SRR4302543.1225856/94‑1 (MQ=60)

                                                            CGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAAT                                   >  SRR4302543.4840360/1‑94 (MQ=60)

                                                            CGGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAATCGATATGCTCAAAGCCCAAAT                                   <  SRR4302543.976776/94‑1 (MQ=60)

                                                             GGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATG                                  <  SRR4302543.7907138/94‑1 (MQ=60)

                                                             GGGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATG                                  <  SRR4302543.546208/94‑1 (MQ=60)

                                                              GGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGC                                 <  SRR4302543.5262677/94‑1 (MQ=60)

                                                              GGCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGC                                 >  SRR4302543.2055421/1‑94 (MQ=60)

                                                               GCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCT                                <  SRR4302543.1044933/94‑1 (MQ=60)

                                                               GCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCT                                <  SRR4302543.7305767/94‑1 (MQ=60)

                                                               GCATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCT                                <  SRR4302543.5443470/94‑1 (MQ=60)

                                                                CATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTC                               <  SRR4302543.6865574/94‑1 (MQ=60)

                                                                 ATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCA                              >  SRR4302543.6578680/1‑94 (MQ=60)

                                                                 ATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCA                              <  SRR4302543.4556171/94‑1 (MQ=60)

                                                                 ATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCA                              >  SRR4302543.6505283/1‑94 (MQ=60)

                                                                 ATTTTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCA                              <  SRR4302543.7635793/94‑1 (MQ=60)

                                                                  TCTTTTTAGAGTACGCCCAACATCCGCACTACACAAACGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCAT                             <  SRR4302543.2332681/94‑1 (MQ=60)

                                                                   TTTTTTAGAGTTCGCGCACCAGCCGCGATTCACAATCGACGTGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATA                            <  SRR4302543.7786103/94‑1 (MQ=60)

                                                                    TTTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAA                           >  SRR4302543.7044779/1‑94 (MQ=60)

                                                                     TTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAA                          >  SRR4302543.1113527/1‑94 (MQ=60)

                                                                     TTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAA                          <  SRR4302543.4667583/94‑1 (MQ=60)

                                                                     TTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAA                          >  SRR4302543.7361998/1‑94 (MQ=60)

                                                                     TTTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAA                          <  SRR4302543.3949851/94‑1 (MQ=60)

                                                                      TTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAG                         <  SRR4302543.4264467/94‑1 (MQ=60)

                                                                      TTTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAG                         >  SRR4302543.758475/1‑94 (MQ=60)

                                                                       TTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGC                        <  SRR4302543.1666298/94‑1 (MQ=60)

                                                                       TTAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGC                        <  SRR4302543.5395298/94‑1 (MQ=60)

                                                                        TAGAGTTCGCGGAACATGCCCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGAGATGCTCAAAGCCCAAATGCTCATAAAGCG                       <  SRR4302543.6396553/94‑1 (MQ=60)

                                                                        TAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCG                       <  SRR4302543.6396551/94‑1 (MQ=60)

                                                                        TAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCG                       <  SRR4302543.440367/94‑1 (MQ=60)

                                                                        TAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCG                       <  SRR4302543.6396549/94‑1 (MQ=60)

                                                                        TAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCG                       >  SRR4302543.6229753/1‑94 (MQ=60)

                                                                        TAGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCG                       <  SRR4302543.1084666/94‑1 (MQ=60)

                                                                         AGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGTCCCGTGGAGCCAAGAGCATAGTCGATCTGCTCCAAGCCCAAATGCTCATAAAGCGC                      >  SRR4302543.4339904/1‑94 (MQ=60)

                                                                         AGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCGCAAATGCTCATAAAGCGC                      >  SRR4302543.241011/1‑94 (MQ=60)

                                                                         AGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGC                      >  SRR4302543.4339903/1‑94 (MQ=60)

                                                                         AGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGC                      <  SRR4302543.942970/94‑1 (MQ=60)

                                                                         AGAGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGC                      <  SRR4302543.4504773/94‑1 (MQ=60)

                                                                           AGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAA                    <  SRR4302543.7492280/94‑1 (MQ=60)

                                                                           AGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAA                    >  SRR4302543.4065373/1‑94 (MQ=60)

                                                                           AGTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAA                    >  SRR4302543.2956859/1‑94 (MQ=60)

                                                                            GTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAAT                   >  SRR4302543.4136734/1‑94 (MQ=60)

                                                                            GTTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAAT                   >  SRR4302543.3316484/1‑94 (MQ=60)

                                                                             TTCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATG                  >  SRR4302543.7481224/1‑94 (MQ=60)

                                                                              TCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGG                 >  SRR4302543.7210484/1‑94 (MQ=60)

                                                                              TCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGG                 <  SRR4302543.3456023/94‑1 (MQ=60)

                                                                              TCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGG                 <  SRR4302543.284043/94‑1 (MQ=60)

                                                                              TCGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGG                 <  SRR4302543.6537155/94‑1 (MQ=60)

                                                                               CGCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGC                <  SRR4302543.600748/94‑1 (MQ=60)

                                                                                GCGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCT               <  SRR4302543.7222197/94‑1 (MQ=60)

                                                                                 CGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAACGCCCAAATGCTCATAAAGCGCAATGGCTT              >  SRR4302543.3734787/1‑94 (MQ=60)

                                                                                 CGCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTT              <  SRR4302543.5430184/94‑1 (MQ=60)

                                                                                  GCAGCAGCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTC             <  SRR4302543.6463244/94‑1 (MQ=60)

                                                                                  GCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTC             >  SRR4302543.3956224/1‑94 (MQ=60)

                                                                                  GCAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTC             <  SRR4302543.6463243/94‑1 (MQ=60)

                                                                                   CAACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCC            <  SRR4302543.4079079/94‑1 (MQ=60)

                                                                                    AACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCT           >  SRR4302543.2603409/1‑94 (MQ=60)

                                                                                     ACATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTT          <  SRR4302543.1238624/94‑1 (MQ=60)

                                                                                      CATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTT         <  SRR4302543.3387181/94‑1 (MQ=60)

                                                                                      CATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTT         >  SRR4302543.1105957/1‑94 (MQ=60)

                                                                                      CATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTT         >  SRR4302543.3987315/1‑94 (MQ=60)

                                                                                      CATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTT         >  SRR4302543.2152342/1‑94 (MQ=60)

                                                                                       ATCCGCGCTTCACCATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302543.5218299/1‑94 (MQ=60)

                                                                                       ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302543.5690477/1‑94 (MQ=60)

                                                                                       ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302543.3557414/1‑94 (MQ=60)

                                                                                       ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302543.6771969/1‑94 (MQ=60)

                                                                                       ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302543.3387584/1‑94 (MQ=60)

                                                                                       ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        >  SRR4302543.6500844/1‑94 (MQ=60)

                                                                                       ATCCGCGCTTCACAATCGACATGGCCCGTGCAGCAAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTA        <  SRR4302543.5220903/94‑1 (MQ=60)

                                                                                        TCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAA       >  SRR4302543.4239846/1‑94 (MQ=60)

                                                                                        TCCGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAA       <  SRR4302543.2862009/94‑1 (MQ=60)

                                                                                          CGCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAA     <  SRR4302543.6889496/94‑1 (MQ=60)

                                                                                           GCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAA    <  SRR4302543.3370837/94‑1 (MQ=60)

                                                                                           GCGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAA    <  SRR4302543.6059460/94‑1 (MQ=60)

                                                                                            CGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAA   >  SRR4302543.4278200/1‑94 (MQ=60)

                                                                                            CGCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAA   >  SRR4302543.4090539/1‑94 (MQ=60)

                                                                                             GCTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  <  SRR4302543.4880329/94‑1 (MQ=60)

CACATCCGGCATAAACAAAACGTACGTTGTTAATGTTCGAATGCCCGCGAGTTGAACACGCGGGCATTTTTTTAGAGTTCGCGCAACATCCGCACTTCACAATCGACATGGCCCGTGCAGCCAAGCGCATAGTCGATATGCTCAAAGCCCAAATGCTCATAAAGCGCAATGGCTTCCTTTAAAAAAG  >  NC_000913/4476526‑4476712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`