Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,582,861 |
A→G |
S509P (TCC→CCC) |
hsdR ← |
endonuclease R |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,582,861 | 0 | A | G | 100.0%
| 969.7
/ NA
| 309 | S509P (TCC→CCC) | hsdR | endonuclease R |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (160/149); total (160/149) |
Only 100 of 327 total aligned reads displayed.
CGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGA > NC_000913/4582771‑4582950
|
cGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCt < 2:3844301/93‑1 (MQ=255)
gTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTg > 2:6066139/1‑93 (MQ=255)
ttAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTgg > 1:2947273/1‑93 (MQ=255)
aTACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATc < 1:3085317/93‑1 (MQ=255)
aTACGCGTATCTTCAAACGCGCCCAGCGCAGGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAAGGCGTTTAAAACGCTGGGGCTGGATc < 1:4593967/93‑1 (MQ=255)
tACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGGTCa > 2:734961/1‑93 (MQ=255)
tACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCa > 1:5447819/1‑93 (MQ=255)
aCGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAg < 2:3109228/93‑1 (MQ=255)
gcgTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAggg > 1:1875027/1‑92 (MQ=255)
gcgTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGc < 1:7123510/93‑1 (MQ=255)
gTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGCTCAGGCgg > 1:6824611/1‑93 (MQ=255)
gTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCgg > 1:4739768/1‑93 (MQ=255)
aTCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGaa > 2:5189154/1‑93 (MQ=255)
aTCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGaa < 1:3371305/93‑1 (MQ=255)
tCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAATGCTGGGGCTGGATCAGGCGGAAc > 2:4291861/1‑93 (MQ=255)
gcTTCTACCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAc > 2:4797237/2‑93 (MQ=255)
ttCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcat > 2:1754740/1‑93 (MQ=255)
aaaCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcatcat < 1:1276902/93‑1 (MQ=255)
aaCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATg < 1:2631140/93‑1 (MQ=255)
aCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATgg > 1:6165713/1‑93 (MQ=255)
aCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATgg < 1:5349818/93‑1 (MQ=255)
cgcCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGa < 2:7843257/93‑1 (MQ=255)
cgcCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGa > 2:1617833/1‑93 (MQ=255)
cgcCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGa < 1:2007043/93‑1 (MQ=255)
cccAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGAtt < 1:2400094/93‑1 (MQ=255)
cAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGc > 1:3254980/1‑93 (MQ=255)
aGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGcc < 2:5815577/93‑1 (MQ=255)
aGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGcc > 1:1067630/1‑93 (MQ=255)
gcgcCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCg > 2:3304791/1‑93 (MQ=255)
ccTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTAc > 2:4974348/1‑93 (MQ=255)
cTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACg > 1:1011807/1‑93 (MQ=255)
cTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACg > 2:6029609/1‑93 (MQ=255)
tGTTCGCCAGGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGTCTGGATCAGGCGGAACATCATGGCGATTGCCGTACgg < 2:2945242/93‑1 (MQ=255)
tGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACgg > 1:3704157/1‑93 (MQ=255)
gTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACggg > 2:2688919/1‑93 (MQ=255)
gTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACggg > 1:5005529/1‑93 (MQ=255)
gTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACggg < 2:5596049/93‑1 (MQ=255)
gTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACggg < 1:7560224/93‑1 (MQ=255)
ttCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGt > 2:7378867/1‑93 (MQ=255)
ttCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGt > 1:1132235/1‑93 (MQ=255)
tCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGtt > 2:5471823/1‑93 (MQ=255)
gCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGtttt < 1:1744723/93‑1 (MQ=255)
cAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCATGCGGAACATCATGGCGATTGCCGTACGGGTTTtac < 2:2256888/93‑1 (MQ=255)
cAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtac < 2:3186818/93‑1 (MQ=255)
agagAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccg < 2:6776704/93‑1 (MQ=255)
agagAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccg > 1:4015899/1‑93 (MQ=255)
gaACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTATGGGTTTtaccggta < 2:6461687/93‑1 (MQ=255)
gaACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggta > 1:5253648/1‑93 (MQ=255)
aaCGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggtac > 2:4749324/1‑93 (MQ=255)
aaCGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggtac > 2:4189050/1‑93 (MQ=255)
aaCGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggtac < 2:7776451/93‑1 (MQ=255)
aCGGCGGTCGACAAGGAAGAGAATGCGTTTAAAGCGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggtacc < 1:7654925/93‑1 (MQ=255)
gcggTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTaccggtaccggt > 2:3557621/1‑93 (MQ=255)
gcggTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTaccggtaccggt < 1:7761328/93‑1 (MQ=255)
gTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtggc > 2:2112756/1‑93 (MQ=255)
cGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgcca < 1:4357868/93‑1 (MQ=255)
gACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccat < 1:4133298/93‑1 (MQ=255)
gACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccat > 1:628619/1‑93 (MQ=255)
gACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccat > 2:3757902/1‑93 (MQ=255)
gACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccat > 2:6990759/1‑93 (MQ=255)
aCAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatc < 2:7683431/93‑1 (MQ=255)
aCAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatc < 2:845730/93‑1 (MQ=255)
aCAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGGTTTACCGGTACCGGtcgccctc > 2:5934175/1‑93 (MQ=255)
cAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatcg < 2:1224443/93‑1 (MQ=255)
cAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatcg > 2:6815263/1‑93 (MQ=255)
aGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatcgcc > 2:7513229/1‑93 (MQ=255)
ggAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatcgcca < 2:7569699/93‑1 (MQ=255)
aaGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagc > 2:8102/1‑93 (MQ=255)
agagAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagca < 1:6447335/93‑1 (MQ=255)
agagAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagca < 1:5209482/93‑1 (MQ=255)
agagAATGAGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagca < 2:1906350/93‑1 (MQ=255)
gaATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGa < 1:6976791/93‑1 (MQ=255)
gaATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGa < 1:4458033/93‑1 (MQ=255)
aTGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtc < 2:3423895/93‑1 (MQ=255)
aTGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtc < 1:1504022/93‑1 (MQ=255)
aTGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGAGTGCCGTACGGGTTTTACCGGTACCGGTCGCCAGCGCCAGCAGGAtc > 1:809950/1‑93 (MQ=255)
tGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtct > 1:3943478/1‑93 (MQ=255)
tGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtct > 1:5785023/1‑93 (MQ=255)
gCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtctc < 2:3965511/93‑1 (MQ=255)
gCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtctc < 1:701789/93‑1 (MQ=255)
gCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtctc > 2:6719225/1‑93 (MQ=255)
gCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtctc < 1:1172460/93‑1 (MQ=255)
tttAAAGCGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCttg < 2:1315988/93‑1 (MQ=255)
tttAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCttg < 2:7288522/93‑1 (MQ=255)
tttAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCttg > 2:6107103/1‑93 (MQ=255)
tttAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCttg > 2:565608/1‑93 (MQ=255)
ttAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCttgt < 1:658265/93‑1 (MQ=255)
ttAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCttgt > 2:1009123/1‑93 (MQ=255)
aCGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGccc > 1:230977/1‑93 (MQ=255)
gCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCt > 1:3894749/1‑93 (MQ=255)
cTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCtt < 2:2373768/93‑1 (MQ=255)
cTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCtt < 1:4626280/93‑1 (MQ=255)
cTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCtt < 2:4044737/93‑1 (MQ=255)
tGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTg > 1:6067768/1‑93 (MQ=255)
tGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTg > 2:3651485/1‑93 (MQ=255)
tGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTg > 1:5019674/1‑93 (MQ=255)
tGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTg > 2:2842134/1‑93 (MQ=255)
ggggCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGa < 2:5348530/93‑1 (MQ=255)
ggggCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGa < 2:2909431/93‑1 (MQ=255)
ggggCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGa < 2:2450466/93‑1 (MQ=255)
|
CGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGA > NC_000913/4582771‑4582950
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGA > NC_000913/4582768‑4582953
|
CGCCGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGG < SRR4302543.4025674/94‑1 (MQ=60)
GCCGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGC > SRR4302543.5739510/1‑94 (MQ=60)
CCGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCT < SRR4302543.3157241/94‑1 (MQ=60)
CCGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCT > SRR4302543.2019185/1‑94 (MQ=60)
CCGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCT > SRR4302543.2740074/1‑94 (MQ=60)
GTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGG > SRR4302543.2974034/1‑94 (MQ=60)
GTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGG > SRR4302543.4116065/1‑94 (MQ=60)
TTAATAGGCGTATCCTCAAACGCGCCCGGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGA < SRR4302543.869523/94‑1 (MQ=60)
TTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGA > SRR4302543.3043471/1‑94 (MQ=60)
TTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGA > SRR4302543.1046891/1‑94 (MQ=60)
TAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGACGAGAATGCGTTTAAAACGCTGGGGCTGGCT > SRR4302543.3941509/1‑94 (MQ=60)
TAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGAT > SRR4302543.3941507/1‑94 (MQ=60)
TAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGAT > SRR4302543.7137325/1‑94 (MQ=60)
AATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATC < SRR4302543.4871846/94‑1 (MQ=60)
AATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATC > SRR4302543.1212513/1‑94 (MQ=60)
ATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGCAGAGAATGCGTTTAAAACGCTGGGGCTGGATCA > SRR4302543.3372558/1‑94 (MQ=60)
ATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCA > SRR4302543.5497246/1‑94 (MQ=60)
ATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCA > SRR4302543.5017399/1‑94 (MQ=60)
ATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCA < SRR4302543.3113063/94‑1 (MQ=60)
ATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCA > SRR4302543.4477238/1‑94 (MQ=60)
ATACGCGTATCTTCAAACGCGCCCAGCGCAGGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAAGGCGTTTAAAACGCTGGGGCTGGATCA < SRR4302543.4635691/94‑1 (MQ=60)
TACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAG > SRR4302543.7764773/1‑94 (MQ=60)
TACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAG < SRR4302543.4476991/94‑1 (MQ=60)
TACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGGCGACAAGGCAGGGAATGCGTTTAAAACGCTGGGGCTGGATCgc > SRR4302543.1161673/1‑92 (MQ=60)
ACGCGTATCTTCAAACGCGCCCAGCGCCTTTTCGCCAAGAGAACTGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGG < SRR4302543.1921240/94‑1 (MQ=60)
ACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGG < SRR4302543.7672184/94‑1 (MQ=60)
ACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGG < SRR4302543.1143539/94‑1 (MQ=60)
CGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGG > SRR4302543.1891872/1‑94 (MQ=60)
CGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGC > SRR4302543.7203890/1‑94 (MQ=60)
GCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCG < SRR4302543.7192709/94‑1 (MQ=60)
GCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCG < SRR4302543.7192710/94‑1 (MQ=60)
CGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGCTCAGGCGG > SRR4302543.6889033/1‑94 (MQ=60)
CGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGG > SRR4302543.4783077/1‑94 (MQ=60)
GTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGA > SRR4302543.6840716/1‑94 (MQ=60)
ATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGGGGAAA > SRR4302543.5418682/1‑94 (MQ=60)
ATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAC < SRR4302543.3401584/94‑1 (MQ=60)
CTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACAT > SRR4302543.7011428/1‑94 (MQ=60)
CTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACAT < SRR4302543.6213273/94‑1 (MQ=60)
TTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATC < SRR4302543.4900061/94‑1 (MQ=60)
TCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCA < SRR4302543.6582410/94‑1 (MQ=60)
TCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCA > SRR4302543.812653/1‑94 (MQ=60)
CAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCAT > SRR4302543.5339987/1‑94 (MQ=60)
CAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCAT > SRR4302543.7078020/1‑94 (MQ=60)
CAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCAT > SRR4302543.5339988/1‑94 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302543.7679090/94‑1 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302543.1288295/94‑1 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302543.7746054/94‑1 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302543.1798355/94‑1 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302543.3023955/94‑1 (MQ=60)
AACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGG < SRR4302543.2654958/94‑1 (MQ=60)
AACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGG > SRR4302543.6224057/1‑94 (MQ=60)
ACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGC < SRR4302543.5398233/94‑1 (MQ=60)
CGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGAT < SRR4302543.2025080/94‑1 (MQ=60)
GCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATT < SRR4302543.6594449/94‑1 (MQ=60)
CCCAGCGCCTGTTCGCTAAGAGAACGGCGGTAGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTG < SRR4302543.102808/94‑1 (MQ=60)
CCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTG < SRR4302543.2421800/94‑1 (MQ=60)
CCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGC > SRR4302543.3284410/1‑94 (MQ=60)
CCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGC > SRR4302543.614817/1‑94 (MQ=60)
CAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCC > SRR4302543.1077225/1‑94 (MQ=60)
CAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCC > SRR4302543.2275999/1‑94 (MQ=60)
GCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGT < SRR4302543.5664716/94‑1 (MQ=60)
CGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTA > SRR4302543.6420501/1‑94 (MQ=60)
GCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTAG > SRR4302543.2733392/1‑94 (MQ=60)
GCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTAC < SRR4302543.311858/94‑1 (MQ=60)
GCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGGAC > SRR4302543.6902620/1‑94 (MQ=60)
CCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACG > SRR4302543.1020756/1‑94 (MQ=60)
CCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACG > SRR4302543.4658514/1‑94 (MQ=60)
CCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGACGATTGCCGTACG > SRR4302543.5450237/1‑94 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG > SRR4302543.5946690/1‑94 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG > SRR4302543.3734500/1‑94 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG > SRR4302543.4022565/1‑94 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG > SRR4302543.3736720/1‑94 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG > SRR4302543.3736719/1‑94 (MQ=60)
TGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGG > SRR4302543.5051089/1‑94 (MQ=60)
TGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGG < SRR4302543.6335570/94‑1 (MQ=60)
GTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGT < SRR4302543.7632193/94‑1 (MQ=60)
GTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGT > SRR4302543.2721773/1‑94 (MQ=60)
GTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGT > SRR4302543.1142517/1‑94 (MQ=60)
GTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGT < SRR4302543.1094132/94‑1 (MQ=60)
TTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTT < SRR4302543.402327/94‑1 (MQ=60)
TCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTT < SRR4302543.5504447/94‑1 (MQ=60)
CGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTT > SRR4302543.2595001/1‑94 (MQ=60)
GCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTA < SRR4302543.1760304/94‑1 (MQ=60)
GCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTA > SRR4302543.2337466/1‑94 (MQ=60)
GCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTA > SRR4302543.6778/1‑94 (MQ=60)
AAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCG > SRR4302543.1055596/1‑94 (MQ=60)
AAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCG > SRR4302543.4051764/1‑94 (MQ=60)
GAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGT < SRR4302543.7293629/94‑1 (MQ=60)
GAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGT < SRR4302543.3233219/94‑1 (MQ=60)
AGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTA > SRR4302543.5301027/1‑94 (MQ=60)
AGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTA > SRR4302543.5301028/1‑94 (MQ=60)
GAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTAC > SRR4302543.4768953/1‑94 (MQ=60)
ACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAGCGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCG < SRR4302543.7727499/94‑1 (MQ=60)
GGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGT < SRR4302543.5383881/94‑1 (MQ=60)
GCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTC < SRR4302543.5058657/94‑1 (MQ=60)
GCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTC < SRR4302543.2019605/94‑1 (MQ=60)
GCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTC < SRR4302543.7834575/94‑1 (MQ=60)
GCGGGCGACAAGGAAGAGAATGCCTTTAAAACGCGGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTC < SRR4302543.5058658/94‑1 (MQ=60)
GGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGC < SRR4302543.4040283/94‑1 (MQ=60)
GTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCC > SRR4302543.5109055/1‑94 (MQ=60)
CGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCAT > SRR4302543.1320273/1‑94 (MQ=60)
CGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCAT < SRR4302543.4397357/94‑1 (MQ=60)
CGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCAT > SRR4302543.634370/1‑94 (MQ=60)
GACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATC < SRR4302543.705187/94‑1 (MQ=60)
GACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATC < SRR4302543.4619411/94‑1 (MQ=60)
GACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATC > SRR4302543.3284934/1‑94 (MQ=60)
GACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATC < SRR4302543.4170593/94‑1 (MQ=60)
ACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCG < SRR4302543.3895334/94‑1 (MQ=60)
AGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCA > SRR4302543.1234747/1‑94 (MQ=60)
GGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGACAG > SRR4302543.1381094/1‑94 (MQ=60)
GGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGGCGCCATCGCCAG < SRR4302543.6813137/94‑1 (MQ=60)
AGAGAGTGCGTTTCAACCGCTGGAGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTCCCGGTCGCCATCGCCAGCAG < SRR4302543.561991/94‑1 (MQ=60)
AGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAG < SRR4302543.5256421/94‑1 (MQ=60)
AGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAG < SRR4302543.7899758/94‑1 (MQ=60)
AGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAG < SRR4302543.6508078/94‑1 (MQ=60)
AGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAG < SRR4302543.5256422/94‑1 (MQ=60)
GAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGG > SRR4302543.2369177/1‑94 (MQ=60)
GAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAT < SRR4302543.4638742/94‑1 (MQ=60)
GAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAT < SRR4302543.4498432/94‑1 (MQ=60)
GAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAT < SRR4302543.7042448/94‑1 (MQ=60)
AATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGAGTGCCGTACGGGTTTTACCGGTACCGGTCGCCAGCGCCAGCAGGATC > SRR4302543.817081/1‑94 (MQ=60)
ATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCT < SRR4302543.7883111/94‑1 (MQ=60)
ATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCT < SRR4302543.1517536/94‑1 (MQ=60)
ATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCT > SRR4302543.5837660/1‑94 (MQ=60)
ATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCT > SRR4302543.3978344/1‑94 (MQ=60)
TGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTT > SRR4302543.1091841/1‑94 (MQ=60)
TGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTC > SRR4302543.7140861/1‑94 (MQ=60)
GCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCT < SRR4302543.708200/94‑1 (MQ=60)
GCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCT < SRR4302543.1183094/94‑1 (MQ=60)
CGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTT > SRR4302543.911616/1‑94 (MQ=60)
GTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTG < SRR4302543.3300821/94‑1 (MQ=60)
TTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGT < SRR4302543.122747/94‑1 (MQ=60)
TTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTT < SRR4302543.4770273/94‑1 (MQ=60)
TTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTT < SRR4302543.664309/94‑1 (MQ=60)
TAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTG > SRR4302543.247208/1‑94 (MQ=60)
AACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCC < SRR4302543.1800095/94‑1 (MQ=60)
AACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCC > SRR4302543.232973/1‑94 (MQ=60)
AACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCC < SRR4302543.361820/94‑1 (MQ=60)
CGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCT > SRR4302543.3929137/1‑94 (MQ=60)
CGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCT < SRR4302543.4353284/94‑1 (MQ=60)
CGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCT < SRR4302543.1713640/94‑1 (MQ=60)
GCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTT < SRR4302543.2095688/94‑1 (MQ=60)
GCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTT < SRR4302543.650618/94‑1 (MQ=60)
GCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTT > SRR4302543.5869927/1‑94 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG > SRR4302543.5065358/1‑94 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG < SRR4302543.4561515/94‑1 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG < SRR4302543.6303451/94‑1 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG < SRR4302543.4561514/94‑1 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG > SRR4302543.436193/1‑94 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG < SRR4302543.4668315/94‑1 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG < SRR4302543.6128859/94‑1 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG > SRR4302543.6125271/1‑94 (MQ=60)
TGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGA > SRR4302543.5096578/1‑94 (MQ=60)
GGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGAC < SRR4302543.1636167/94‑1 (MQ=60)
GGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGAC < SRR4302543.4091502/94‑1 (MQ=60)
GGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGA > SRR4302543.7954053/1‑94 (MQ=60)
GGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGA < SRR4302543.3446771/94‑1 (MQ=60)
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CGCCGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGA > NC_000913/4582768‑4582953
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |