Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,582,861 |
A→G |
S509P (TCC→CCC) |
hsdR ← |
endonuclease R |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,582,861 | 0 | A | G | 99.5%
| 599.5
/ ‑4.9
| 192 | S509P (TCC→CCC) | hsdR | endonuclease R |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (93/98); total (94/98) |
| Fisher's exact test for biased strand distribution p-value = 4.90e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.28e-01 |
Only 100 of 201 total aligned reads displayed.
CGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGA > NC_000913/4582771‑4582950
|
cGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCt < 1:2296565/93‑1 (MQ=255)
gTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTg > 1:4366305/1‑93 (MQ=255)
tAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGa < 2:4012993/93‑1 (MQ=255)
tAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGa > 1:4643724/1‑93 (MQ=255)
aaTACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGAt < 1:338351/93‑1 (MQ=255)
aaTACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTAGGGCTGGAt > 2:864196/1‑93 (MQ=255)
aTACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATc < 1:1505777/93‑1 (MQ=255)
aTACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATc < 2:788429/93‑1 (MQ=255)
aTACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATc > 2:3657308/1‑93 (MQ=255)
tACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCa > 2:2527703/1‑93 (MQ=255)
cgcgTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAgg < 1:1728365/93‑1 (MQ=255)
cgTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCg < 2:4429842/93‑1 (MQ=255)
cgTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCg < 1:3978867/93‑1 (MQ=255)
cgTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCg > 1:4007027/1‑93 (MQ=255)
gTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACTCTGGGGCTGGATCAGGTgg > 1:158934/1‑93 (MQ=255)
gTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCgg > 2:933996/1‑93 (MQ=255)
tCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAc < 1:1564802/93‑1 (MQ=255)
tCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAc > 1:1184646/1‑93 (MQ=255)
tCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCCGAAc > 2:3702582/1‑93 (MQ=255)
tCTTCAAACGCGCCCAGCGCCTGGTCGCCAAGAGAACGGCGGTCGAGAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAc > 2:3780071/1‑93 (MQ=255)
tCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGGCGAAcatc > 2:1390393/1‑93 (MQ=255)
tCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGGAcata > 1:25786/1‑92 (MQ=255)
tCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcatc > 2:1797881/1‑93 (MQ=255)
tCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcatc > 2:1506961/1‑93 (MQ=255)
tCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcatc < 1:2437967/93‑1 (MQ=255)
aaaCGCGCCCAGCGCCTGTTCGCCAAGAGAACGTCAGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcatcat < 2:4485993/93‑1 (MQ=255)
aaaCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcatcat < 1:497176/93‑1 (MQ=255)
aaaCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcatcat < 1:4322461/93‑1 (MQ=255)
aaaCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAcatcat > 1:3253131/1‑93 (MQ=255)
aaCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATg > 1:3668607/1‑93 (MQ=255)
aaCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATg > 1:1993700/1‑93 (MQ=255)
aCGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATgg < 1:99183/93‑1 (MQ=255)
cgcgCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGc < 1:3807351/93‑1 (MQ=255)
cgcCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGa > 2:4657385/1‑93 (MQ=255)
gcCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATGAGGCGGAACATCATGGCGAt > 1:1762819/1‑93 (MQ=255)
gcCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGAt < 2:2694382/93‑1 (MQ=255)
gcCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGAt < 2:3095760/93‑1 (MQ=255)
ccAGCGCCTGTTCGCCAAGAGAACGTCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTg < 2:1693702/93‑1 (MQ=255)
ccAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGAttc > 1:3487438/1‑92 (MQ=255)
aGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGcc > 1:2701525/1‑93 (MQ=255)
gcgcCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCg > 1:3715171/1‑93 (MQ=255)
gcgcCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCg > 2:4102470/1‑93 (MQ=255)
gcgcCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCg > 2:3297884/1‑93 (MQ=255)
cgcCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGt < 2:606029/93‑1 (MQ=255)
ccTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTAc < 2:4137434/93‑1 (MQ=255)
cTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACg > 1:4554167/1‑93 (MQ=255)
cTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACg < 1:179739/93‑1 (MQ=255)
tGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACgg > 1:927174/1‑93 (MQ=255)
gTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACggg > 2:1568228/1‑93 (MQ=255)
ttCGCCAAGAGAACGGAGGTCAACAAGGAAGAGAATGCTTCTAAAACGCTGGGGCTGGATCAGGCGCAACATCATGGCGATTGCCGTACggga < 2:3169497/93‑2 (MQ=255)
gCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGtttt > 1:2097383/1‑93 (MQ=255)
ccAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTta > 2:2143494/1‑93 (MQ=255)
ccAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTta > 2:1332081/1‑93 (MQ=255)
cAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtac > 1:2497364/1‑93 (MQ=255)
cAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtac > 2:2018136/1‑93 (MQ=255)
aaGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtacc < 2:23665/93‑1 (MQ=255)
agagAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccg > 1:2793586/1‑93 (MQ=255)
agaACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggt < 2:739699/93‑1 (MQ=255)
gaACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggta < 2:3019195/93‑1 (MQ=255)
gaACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggga > 1:1676558/1‑91 (MQ=255)
aaCGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggtac > 2:1287446/1‑93 (MQ=255)
ggcggTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTtaccggtaccgg < 2:1084116/93‑1 (MQ=255)
gcggTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTaccggtaccggt < 2:2069657/93‑1 (MQ=255)
gTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgc > 2:1191938/1‑93 (MQ=255)
tCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgcc > 2:339448/1‑93 (MQ=255)
cGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgcca < 2:969692/93‑1 (MQ=255)
cGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgcca > 1:1103774/1‑93 (MQ=255)
cGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgcca < 2:757344/93‑1 (MQ=255)
gACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGccgccat > 1:4155859/1‑93 (MQ=255)
aGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatcgcc > 1:66806/1‑93 (MQ=255)
ggAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatcgcca > 2:2783368/1‑93 (MQ=255)
ggAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGtcgccatcgcca < 1:3189315/93‑1 (MQ=255)
ggAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCAGGGCGATTGCCCTACGGGTTTTACCGGTACCGGtcgccatcgcca < 2:2913994/93‑1 (MQ=255)
gAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcag > 2:2193961/1‑93 (MQ=255)
aaGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagc > 1:3434197/1‑93 (MQ=255)
agagAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagca > 2:8935/1‑93 (MQ=255)
agagAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagca < 1:535353/93‑1 (MQ=255)
agagAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagca > 2:469769/1‑93 (MQ=255)
agagAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagca < 2:3546098/93‑1 (MQ=255)
gagaATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCcagcag < 1:1873496/93‑1 (MQ=255)
aaTGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAt < 1:3460652/93‑1 (MQ=255)
tGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtct < 2:4280853/93‑1 (MQ=255)
gCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGAtctc > 2:2060567/1‑93 (MQ=255)
cGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATctct < 1:2738350/93‑1 (MQ=255)
gTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCtt > 1:3240454/1‑93 (MQ=255)
gTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCtt < 1:2399402/93‑1 (MQ=255)
gTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCtt < 1:4520881/93‑1 (MQ=255)
gTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCtt > 1:2613314/1‑93 (MQ=255)
gTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCtt > 2:3462630/1‑93 (MQ=255)
ttAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCttgt < 1:3845612/93‑1 (MQ=255)
ttAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCttgt < 1:3522029/93‑1 (MQ=255)
aaaaCGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCTCCAGCAGGATATCttgttg < 2:4566672/93‑1 (MQ=255)
aCGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGccc > 1:2879402/1‑93 (MQ=255)
aCGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGccc > 1:854646/1‑93 (MQ=255)
aCGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGccc < 2:1542654/93‑1 (MQ=255)
gCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCt < 2:4633217/93‑1 (MQ=255)
cTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCtt > 2:3530498/1‑93 (MQ=255)
ggggCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGa < 1:3034284/93‑1 (MQ=255)
ggggCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGa < 2:3050943/93‑1 (MQ=255)
ggggCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGa < 1:1782378/93‑1 (MQ=255)
|
CGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGA > NC_000913/4582771‑4582950
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGAT > NC_000913/4582771‑4582954
|
CGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTG < SRR4302535.2313004/94‑1 (MQ=60)
CGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTG > SRR4302535.4396181/1‑94 (MQ=60)
GTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGG > SRR4302535.1666020/1‑94 (MQ=60)
TTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGA > SRR4302535.4675198/1‑94 (MQ=60)
TAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGAT < SRR4302535.444173/94‑1 (MQ=60)
AATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATC < SRR4302535.340692/94‑1 (MQ=60)
AATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATC < SRR4302535.3526996/94‑1 (MQ=60)
ATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCA > SRR4302535.1165857/1‑94 (MQ=60)
ATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCA < SRR4302535.1516602/94‑1 (MQ=60)
TACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAG < SRR4302535.3704198/94‑1 (MQ=60)
ACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGG < SRR4302535.2300306/94‑1 (MQ=60)
CGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGC < SRR4302535.1740856/94‑1 (MQ=60)
GCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCG > SRR4302535.4034444/1‑94 (MQ=60)
GCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCG > SRR4302535.550723/1‑94 (MQ=60)
CGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACTCTGGGGCTGGATCAGGTGG > SRR4302535.160051/1‑94 (MQ=60)
CGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGG < SRR4302535.4006056/94‑1 (MQ=60)
GTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGA > SRR4302535.947535/1‑94 (MQ=60)
ATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAAC > SRR4302535.1193108/1‑94 (MQ=60)
TCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACA < SRR4302535.1576100/94‑1 (MQ=60)
TTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGGACATA > SRR4302535.25987/1‑94 (MQ=60)
TTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATC < SRR4302535.4023216/94‑1 (MQ=60)
TTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATC < SRR4302535.3264892/94‑1 (MQ=60)
TCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCA < SRR4302535.2455528/94‑1 (MQ=60)
CAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCAT > SRR4302535.3275734/1‑94 (MQ=60)
CAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCAT < SRR4302535.3870008/94‑1 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302535.500665/94‑1 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG > SRR4302535.2008056/1‑94 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG > SRR4302535.3694016/1‑94 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302535.2834795/94‑1 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302535.4055703/94‑1 (MQ=60)
AAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATG < SRR4302535.4352030/94‑1 (MQ=60)
ACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGC < SRR4302535.99882/94‑1 (MQ=60)
CGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCG < SRR4302535.3833609/94‑1 (MQ=60)
CGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCG < SRR4302535.1899517/94‑1 (MQ=60)
CGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGCAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCG < SRR4302535.520444/94‑1 (MQ=60)
CGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATGAGGCGGAACATCATGGCGAT > SRR4302535.1775587/1‑94 (MQ=60)
CCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACCTCATGGCGATTG > SRR4302535.1824012/1‑94 (MQ=60)
CCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTC > SRR4302535.3511651/1‑94 (MQ=60)
CAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCC > SRR4302535.2720826/1‑94 (MQ=60)
CAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTGAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCC < SRR4302535.2530395/94‑1 (MQ=60)
AGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCG < SRR4302535.3500779/94‑1 (MQ=60)
AGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCG > SRR4302535.3740908/1‑94 (MQ=60)
GCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTAC > SRR4302535.3354728/1‑94 (MQ=60)
GCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTAC < SRR4302535.3234887/94‑1 (MQ=60)
CCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACG > SRR4302535.4585279/1‑94 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG < SRR4302535.180988/94‑1 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG < SRR4302535.3408587/94‑1 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG > SRR4302535.1797039/1‑94 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG > SRR4302535.177336/1‑94 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG < SRR4302535.2726040/94‑1 (MQ=60)
CTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGG > SRR4302535.933740/1‑94 (MQ=60)
GTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGT > SRR4302535.4717170/1‑94 (MQ=60)
TCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTT < SRR4302535.1780684/94‑1 (MQ=60)
TCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTT < SRR4302535.2418306/94‑1 (MQ=60)
CGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTT > SRR4302535.2112510/1‑94 (MQ=60)
CCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTAC > SRR4302535.2515381/1‑94 (MQ=60)
CAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACC > SRR4302535.3895466/1‑94 (MQ=60)
AAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCG > SRR4302535.2813464/1‑94 (MQ=60)
AGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGG < SRR4302535.4369928/94‑1 (MQ=60)
AGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGGA > SRR4302535.1688698/1‑94 (MQ=60)
AACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACC < SRR4302535.689638/94‑1 (MQ=60)
ACGGCGGTCGACAAGGAAGAGAATGCGTTTAAATCGCTGGGGCTGGATCAGGCGTAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCG < SRR4302535.2398696/94‑1 (MQ=60)
TCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCA > SRR4302535.1111658/1‑94 (MQ=60)
CGACAAGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGCCGCCAT > SRR4302535.4184310/1‑94 (MQ=60)
AAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCC > SRR4302535.67305/1‑94 (MQ=60)
AGGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCA > SRR4302535.1599833/1‑94 (MQ=60)
GGAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAG < SRR4302535.3211369/94‑1 (MQ=60)
GAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGC < SRR4302535.4593991/94‑1 (MQ=60)
GAAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGC > SRR4302535.3458064/1‑94 (MQ=60)
AAGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCA > SRR4302535.1357417/1‑94 (MQ=60)
AGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAG < SRR4302535.539093/94‑1 (MQ=60)
AGAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAG > SRR4302535.3203521/1‑94 (MQ=60)
GAGAATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGG < SRR4302535.1886997/94‑1 (MQ=60)
AATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATC < SRR4302535.3484711/94‑1 (MQ=60)
AATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATC < SRR4302535.910566/94‑1 (MQ=60)
ATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCT < SRR4302535.3819029/94‑1 (MQ=60)
ATGCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCT > SRR4302535.3660537/1‑94 (MQ=60)
GCGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCT > SRR4302535.1689526/1‑94 (MQ=60)
CGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTT > SRR4302535.3262954/1‑94 (MQ=60)
CGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTT < SRR4302535.2604644/94‑1 (MQ=60)
CGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTT > SRR4302535.2632058/1‑94 (MQ=60)
CGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTT < SRR4302535.293270/94‑1 (MQ=60)
CGTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTT < SRR4302535.2757878/94‑1 (MQ=60)
GTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTG < SRR4302535.4551864/94‑1 (MQ=60)
GTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTG < SRR4302535.2416655/94‑1 (MQ=60)
GTTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTG < SRR4302535.4315865/94‑1 (MQ=60)
TTTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGT < SRR4302535.2777379/94‑1 (MQ=60)
TTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTT < SRR4302535.2481366/94‑1 (MQ=60)
TTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTT < SRR4302535.3546491/94‑1 (MQ=60)
TTAAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTT < SRR4302535.3872090/94‑1 (MQ=60)
AAAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGC > SRR4302535.1523549/1‑94 (MQ=60)
AAACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCC < SRR4302535.4576791/94‑1 (MQ=60)
AACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCC > SRR4302535.2899787/1‑94 (MQ=60)
AACGCTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCC > SRR4302535.860669/1‑94 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG < SRR4302535.3479783/94‑1 (MQ=60)
CTGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTG > SRR4302535.2655041/1‑94 (MQ=60)
TGGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGA < SRR4302535.2063192/94‑1 (MQ=60)
GGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGAG > SRR4302535.1292101/1‑94 (MQ=60)
GGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGAC < SRR4302535.1795277/94‑1 (MQ=60)
GGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGAC > SRR4302535.3917160/1‑94 (MQ=60)
GGGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGAC < SRR4302535.3055526/94‑1 (MQ=60)
GGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACG < SRR4302535.684890/94‑1 (MQ=60)
GGGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACG < SRR4302535.4207862/94‑1 (MQ=60)
GGCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGA > SRR4302535.2308691/1‑94 (MQ=60)
GCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGAT > SRR4302535.1522728/1‑94 (MQ=60)
GCTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGAT < SRR4302535.3373944/94‑1 (MQ=60)
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CGTTAATACGCGTATCTTCAAACGCGCCCAGCGCCTGTTCGCCAAGAGAACGGCGGTCGACAAGGAAGAGAATGCGTTTAAAACGCTGGGACTGGATCAGGCGGAACATCATGGCGATTGCCGTACGGGTTTTACCGGTACCGGTCGCCATCGCCAGCAGGATCTCTTGTTGCCCCTTGACGAT > NC_000913/4582771‑4582954
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
