Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,619,453 |
T→G |
V39G (GTG→GGG) |
yjjJ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,619,453 | 0 | T | G | 99.7%
| 952.7
/ NA
| 298 | V39G (GTG→GGG) | yjjJ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (140/157); total (140/158) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 309 total aligned reads displayed.
TGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACG > NC_000913/4619363‑4619542
|
tGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGa > 1:1074528/1‑93 (MQ=255)
tGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGa > 2:61200/1‑93 (MQ=255)
tGCAAGGGCCGCGTGCTTCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGa < 2:1833580/93‑1 (MQ=255)
cAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGAtt < 2:5791188/93‑1 (MQ=255)
cAAGGGCCGCCTGCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGAtt < 1:1639603/93‑1 (MQ=255)
aGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCg > 2:7807792/1‑93 (MQ=255)
gggCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGc > 2:2719986/1‑93 (MQ=255)
gggCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGc < 2:4631949/93‑1 (MQ=255)
ccGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCttt > 1:545864/1‑93 (MQ=255)
ccGCGTTCTGCCACGGAAGTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCttt < 2:2519830/93‑1 (MQ=255)
cgcgTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTg < 2:5043908/93‑1 (MQ=255)
gcgTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTgg < 2:3516501/93‑1 (MQ=255)
gcgTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTgg > 2:3110061/1‑93 (MQ=255)
gcgTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTgg > 2:1960601/1‑93 (MQ=255)
gTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTa > 2:365720/1‑93 (MQ=255)
gTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTa > 1:7363815/1‑93 (MQ=255)
gTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGACTTGTTGCCAGAGAAGATCGGGGGACTCGCTTTGGTa > 2:655749/1‑93 (MQ=255)
ttCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTaa > 1:1692612/1‑93 (MQ=255)
tCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTaaa < 1:5361825/93‑1 (MQ=255)
cTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAg < 2:6650148/93‑1 (MQ=255)
tGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGc < 1:4769599/93‑1 (MQ=255)
gCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCa < 2:4729683/93‑1 (MQ=255)
gCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCa < 2:48374/93‑1 (MQ=255)
gCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCa < 1:7005781/93‑1 (MQ=255)
ccccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCAc < 2:6233038/93‑1 (MQ=255)
ccccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCAc < 1:3039120/93‑1 (MQ=255)
cccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACg < 1:5133092/93‑1 (MQ=255)
cccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACg < 2:5047530/93‑1 (MQ=255)
ccGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACgg > 2:5418637/1‑93 (MQ=255)
cGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACggg < 1:2662482/93‑1 (MQ=255)
cGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACggg < 1:7742659/93‑1 (MQ=255)
gAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGGTTCGCTTTGGTAAAGCACGGGCa > 2:6348313/1‑93 (MQ=255)
gAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCa < 1:740326/93‑1 (MQ=255)
aTTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAc > 2:3209562/1‑93 (MQ=255)
ttGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAcg > 2:6695661/1‑93 (MQ=255)
gcAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGata < 1:6869674/92‑1 (MQ=255)
ccAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGata < 2:4166789/93‑1 (MQ=255)
ccAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGata < 2:1487882/93‑1 (MQ=255)
ccAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGata < 2:1016505/93‑1 (MQ=255)
cAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGatat < 2:6482322/93‑1 (MQ=255)
aGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATg < 2:5159555/93‑1 (MQ=255)
aGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATg > 2:3186021/1‑93 (MQ=255)
gCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGc > 1:5811948/1‑93 (MQ=255)
cGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCa < 1:4533752/93‑1 (MQ=255)
gTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAc > 2:4470223/1‑93 (MQ=255)
tGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCActgc < 1:902786/93‑1 (MQ=255)
tGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCActgc < 1:3977702/93‑1 (MQ=255)
tGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCActgc < 2:533625/93‑1 (MQ=255)
gCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCActgctg > 2:6033833/1‑93 (MQ=255)
cAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACtgctgc > 1:7559849/1‑93 (MQ=255)
cAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACtgctgc < 1:6494200/93‑1 (MQ=255)
cAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACtgctgc < 1:5987429/93‑1 (MQ=255)
aaTCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCg > 2:6972382/1‑93 (MQ=255)
aaTCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCg > 2:1542060/1‑93 (MQ=255)
aTCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGt > 1:3820578/1‑93 (MQ=255)
agtcagCGGACGTGCCCACGCCTTGTTACAAGAGAAGATCGGGTGAATCGCTATCATAAAGCACGGGCAACGCGATATGGACTAATGCGTCCt < 2:1095812/93‑1 (MQ=255)
tcagGTGACGTTCTCGCGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTa < 1:6050245/93‑1 (MQ=255)
tcagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTa < 1:1798479/93‑1 (MQ=255)
tcagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTa < 2:837412/93‑1 (MQ=255)
cagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTAt < 2:7398231/93‑1 (MQ=255)
cagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTAt < 1:2149367/93‑1 (MQ=255)
cagGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTAt < 1:2802488/93‑1 (MQ=255)
ggCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATcg > 2:3214057/1‑93 (MQ=255)
gACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCgg < 1:6220052/93‑1 (MQ=255)
aCGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGa > 2:2323021/1‑93 (MQ=255)
cGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGaa < 1:1262797/93‑1 (MQ=255)
cGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGaa < 1:7922821/93‑1 (MQ=255)
cGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGaa > 2:1139952/1‑93 (MQ=255)
gTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGGTTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAt > 2:7340029/1‑93 (MQ=255)
gTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAt > 1:5635008/1‑93 (MQ=255)
gTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAt > 2:4980859/1‑93 (MQ=255)
ttCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAtt > 2:2928576/1‑93 (MQ=255)
tctcACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTg > 1:3645608/1‑93 (MQ=255)
ctcACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGa < 2:1326378/93‑1 (MQ=255)
ctcACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGa < 1:4896333/93‑1 (MQ=255)
cACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGc < 1:6744973/93‑1 (MQ=255)
cACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGc < 1:602991/93‑1 (MQ=255)
gCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTa < 1:1975219/93‑1 (MQ=255)
gCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTa < 1:3405506/93‑1 (MQ=255)
ccTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAt > 2:7423716/1‑93 (MQ=255)
cTTGTTGCCAGAGAAGATCGGGGGGTTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAtt > 1:153646/1‑93 (MQ=255)
cTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAtt > 2:2026367/1‑93 (MQ=255)
cTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAtt > 1:3254937/1‑93 (MQ=255)
ttgttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTc < 1:6111480/93‑1 (MQ=255)
tgttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTcc < 1:3187649/93‑1 (MQ=255)
ttgCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCg > 2:5622424/1‑93 (MQ=255)
gCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTc < 1:7147866/93‑1 (MQ=255)
gCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTc > 2:7717181/1‑93 (MQ=255)
ccAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCt < 1:1457075/93‑1 (MQ=255)
ccAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCt < 2:2583712/93‑1 (MQ=255)
agaagaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCg > 1:503124/1‑93 (MQ=255)
gaagaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCgg > 1:434059/1‑93 (MQ=255)
aagaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCggg < 1:230303/93‑1 (MQ=255)
agaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGt < 2:3384483/93‑1 (MQ=255)
agaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAGTGAGCGTCTTCCCGTCTGGCgggg > 2:5886098/1‑92 (MQ=255)
gaTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCgggcg > 2:399848/1‑91 (MQ=255)
aTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTgg > 1:5725154/1‑93 (MQ=255)
aTCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTgg < 2:4413928/93‑1 (MQ=255)
cGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGAc < 2:7635370/93‑1 (MQ=255)
ggggGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACg > 1:6292811/1‑93 (MQ=255)
|
TGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACG > NC_000913/4619363‑4619542
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATA > NC_000913/4619361‑4619545
|
ACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTTTCACGCCTTGTTGCCAGAGAAGATCGGGGG < SRR4302543.3512584/94‑1 (MQ=60)
ACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGG > SRR4302543.2408631/1‑94 (MQ=60)
CTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGA > SRR4302543.1084186/1‑94 (MQ=60)
GCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATT < SRR4302543.6113521/94‑1 (MQ=60)
GCAAGGGCCGCGTGCTGGCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATT < SRR4302543.6113523/94‑1 (MQ=60)
CAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTC < SRR4302543.2917099/94‑1 (MQ=60)
CAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTC > SRR4302543.2374261/1‑94 (MQ=60)
CAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTC < SRR4302543.7185961/94‑1 (MQ=60)
CAAGGGCCGCCTGCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTC < SRR4302543.1654228/94‑1 (MQ=60)
AGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGC > SRR4302543.4978021/1‑94 (MQ=60)
GCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTT > SRR4302543.550902/1‑94 (MQ=60)
CCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTG > SRR4302543.5423744/1‑94 (MQ=60)
CCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTG < SRR4302543.4528590/94‑1 (MQ=60)
CGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGG < SRR4302543.5059080/94‑1 (MQ=60)
CGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGG > SRR4302543.3350948/1‑94 (MQ=60)
CGCGTGCTGCCCCGGAAGTGCGGCAGCGTGTGGCAAACAGTCACGCGGCGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGG < SRR4302543.5940222/94‑1 (MQ=60)
CGCCTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGG < SRR4302543.2076470/94‑1 (MQ=60)
GCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGT > SRR4302543.879350/1‑94 (MQ=60)
GCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGT < SRR4302543.1358796/94‑1 (MQ=60)
CGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCCGAGAAGATCGGGGGATTCGCTTTGGTA > SRR4302543.7434627/1‑94 (MQ=60)
CGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTA > SRR4302543.7434625/1‑94 (MQ=60)
GTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAA > SRR4302543.1707798/1‑94 (MQ=60)
GTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAA > SRR4302543.5775797/1‑94 (MQ=60)
TTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAA < SRR4302543.6072354/94‑1 (MQ=60)
TTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAA < SRR4302543.537920/94‑1 (MQ=60)
TCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAG < SRR4302543.5410350/94‑1 (MQ=60)
TGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCA < SRR4302543.4292791/94‑1 (MQ=60)
TGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCA < SRR4302543.4813192/94‑1 (MQ=60)
GCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCAC < SRR4302543.7072387/94‑1 (MQ=60)
CCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACG > SRR4302543.3606839/1‑94 (MQ=60)
CCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACG < SRR4302543.6975668/94‑1 (MQ=60)
CCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACG < SRR4302543.3066536/94‑1 (MQ=60)
CCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACG < SRR4302543.3011509/94‑1 (MQ=60)
CCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACG < SRR4302543.6975667/94‑1 (MQ=60)
CCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGG < SRR4302543.5179490/94‑1 (MQ=60)
CCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGG < SRR4302543.5017577/94‑1 (MQ=60)
CGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGC < SRR4302543.7815797/94‑1 (MQ=60)
CGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGC < SRR4302543.2686618/94‑1 (MQ=60)
CGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGC < SRR4302543.7261392/94‑1 (MQ=60)
GAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAA < SRR4302543.746940/94‑1 (MQ=60)
AATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAAC < SRR4302543.7782701/94‑1 (MQ=60)
ATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACG > SRR4302543.1933914/1‑94 (MQ=60)
CGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGAT < SRR4302543.6880735/94‑1 (MQ=60)
GCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATA > SRR4302543.5668173/1‑94 (MQ=60)
GCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT < SRR4302543.6934374/94‑1 (MQ=60)
CCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT > SRR4302543.2211060/1‑94 (MQ=60)
CCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT < SRR4302543.6395934/94‑1 (MQ=60)
CCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATAT < SRR4302543.4423571/94‑1 (MQ=60)
CAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATG > SRR4302543.6093714/1‑94 (MQ=60)
AGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCACCGCGATATGC > SRR4302543.5864800/1‑94 (MQ=60)
AGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGC > SRR4302543.6644901/1‑94 (MQ=60)
AGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGC > SRR4302543.5864801/1‑94 (MQ=60)
CGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC < SRR4302543.1612796/94‑1 (MQ=60)
CGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC > SRR4302543.7594843/1‑94 (MQ=60)
CGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC > SRR4302543.1264633/1‑94 (MQ=60)
CGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC < SRR4302543.4575024/94‑1 (MQ=60)
CGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC < SRR4302543.4575026/94‑1 (MQ=60)
CGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC > SRR4302543.4741166/1‑94 (MQ=60)
CGTCTGGCAATCAGGCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCAC < SRR4302543.942666/94‑1 (MQ=60)
GTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACT < SRR4302543.594670/94‑1 (MQ=60)
GTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACT > SRR4302543.3823450/1‑94 (MQ=60)
TCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTG < SRR4302543.7128442/94‑1 (MQ=60)
CTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGC > SRR4302543.753035/1‑94 (MQ=60)
CTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAACACGGGCAACGCGATATGCACTGC < SRR4302543.6178858/94‑1 (MQ=60)
TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT < SRR4302543.962063/94‑1 (MQ=60)
TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT < SRR4302543.4265767/94‑1 (MQ=60)
TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT < SRR4302543.910743/94‑1 (MQ=60)
TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT < SRR4302543.1472661/94‑1 (MQ=60)
TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT < SRR4302543.4012976/94‑1 (MQ=60)
TGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCT < SRR4302543.7451899/94‑1 (MQ=60)
GGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTG < SRR4302543.259928/94‑1 (MQ=60)
GCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGC > SRR4302543.7631816/1‑94 (MQ=60)
CAATCAGTCAGGCGCCGTTCTCACGTCTTGTTGCCAGAGCAGATCGGCGATTTCGCATTGGTAAAGCACGGGCAACGCGATATGCACTGCTCCG < SRR4302543.6042299/94‑1 (MQ=57)
CAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCG < SRR4302543.6042298/94‑1 (MQ=60)
CAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCG < SRR4302543.6042297/94‑1 (MQ=60)
CAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCG < SRR4302543.6555383/94‑1 (MQ=60)
CAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCG < SRR4302543.821853/94‑1 (MQ=60)
AATCAGTCATGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGAACGGGCAACGCGATATGCACTGCTGAGT > SRR4302543.5721231/1‑94 (MQ=60)
AATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGT < SRR4302543.4844263/94‑1 (MQ=60)
AATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGT < SRR4302543.7931000/94‑1 (MQ=60)
AATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGT > SRR4302543.3854267/1‑94 (MQ=60)
CAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCT > SRR4302543.2206015/1‑94 (MQ=60)
AGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTT > SRR4302543.2818125/1‑94 (MQ=60)
TCAGGTGACGTTCTCGCGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTAT < SRR4302543.6107513/94‑1 (MQ=60)
TCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTAT < SRR4302543.1814583/94‑1 (MQ=60)
CAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATC < SRR4302543.1661247/94‑1 (MQ=60)
CAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATC < SRR4302543.2168612/94‑1 (MQ=60)
CAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATC < SRR4302543.2828117/94‑1 (MQ=60)
AGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCG < SRR4302543.1238542/94‑1 (MQ=60)
AGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCG > SRR4302543.1320784/1‑94 (MQ=60)
CGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGG > SRR4302543.2687608/1‑94 (MQ=60)
CGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGG > SRR4302543.5127778/1‑94 (MQ=60)
CGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGG < SRR4302543.6346038/94‑1 (MQ=60)
GACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGA > SRR4302543.3223526/1‑94 (MQ=60)
GACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGA < SRR4302543.6278769/94‑1 (MQ=60)
ACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAA > SRR4302543.2128335/1‑94 (MQ=60)
ACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAA > SRR4302543.6237587/1‑94 (MQ=60)
CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT < SRR4302543.1274102/94‑1 (MQ=60)
CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT > SRR4302543.3175587/1‑94 (MQ=60)
CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT > SRR4302543.5686366/1‑94 (MQ=60)
CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT < SRR4302543.7997235/94‑1 (MQ=60)
CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT > SRR4302543.5788282/1‑94 (MQ=60)
CGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAAT > SRR4302543.5628379/1‑94 (MQ=60)
GTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATT > SRR4302543.5272308/1‑94 (MQ=60)
GTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATT < SRR4302543.3597493/94‑1 (MQ=60)
GTTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATT > SRR4302543.7682942/1‑94 (MQ=60)
TTCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTG > SRR4302543.3677664/1‑94 (MQ=60)
TCTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGA > SRR4302543.3217965/1‑94 (MQ=60)
CTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAG > SRR4302543.3963112/1‑94 (MQ=60)
CTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAG < SRR4302543.3911146/94‑1 (MQ=60)
CTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAG < SRR4302543.5103080/94‑1 (MQ=60)
CTCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAG < SRR4302543.4940965/94‑1 (MQ=60)
TCACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGC > SRR4302543.7319164/1‑94 (MQ=60)
CACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCG < SRR4302543.608513/94‑1 (MQ=60)
CACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCG > SRR4302543.7992410/1‑94 (MQ=60)
CACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCG < SRR4302543.1858583/94‑1 (MQ=60)
CACGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCG < SRR4302543.6808673/94‑1 (MQ=60)
CGCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTA > SRR4302543.3719778/1‑94 (MQ=60)
GCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAT < SRR4302543.1992929/94‑1 (MQ=60)
GCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAT > SRR4302543.4925246/1‑94 (MQ=60)
GCCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTAT < SRR4302543.3436003/94‑1 (MQ=60)
CCTTGTTGCCAGAGAAGATCGGGGGGTTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATT > SRR4302543.154973/1‑94 (MQ=60)
CCTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATT > SRR4302543.3284366/1‑94 (MQ=60)
CTTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTC > SRR4302543.6319020/1‑94 (MQ=60)
TTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCC < SRR4302543.6169373/94‑1 (MQ=60)
TTGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCC < SRR4302543.1506861/94‑1 (MQ=60)
TGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCC > SRR4302543.6189911/1‑94 (MQ=60)
TGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCC < SRR4302543.1575908/94‑1 (MQ=60)
TGTTGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCC < SRR4302543.3216391/94‑1 (MQ=60)
TGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTC < SRR4302543.6808730/94‑1 (MQ=60)
TGCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTC > SRR4302543.6105210/1‑94 (MQ=60)
GCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCT < SRR4302543.7217342/94‑1 (MQ=60)
GCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCT > SRR4302543.5413457/1‑94 (MQ=60)
GCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCT < SRR4302543.7963235/94‑1 (MQ=60)
GCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCT > SRR4302543.1787890/1‑94 (MQ=60)
GCCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCT < SRR4302543.3191756/94‑1 (MQ=60)
CCAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTG < SRR4302543.1470225/94‑1 (MQ=60)
CAGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGG > SRR4302543.2919713/1‑94 (MQ=60)
AGAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGC > SRR4302543.6442107/1‑94 (MQ=60)
GAGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCG > SRR4302543.507797/1‑94 (MQ=60)
AGAAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGG > SRR4302543.438128/1‑94 (MQ=60)
AAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGT < SRR4302543.232293/94‑1 (MQ=60)
AAGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGG > SRR4302543.6650796/1‑94 (MQ=60)
AGATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGAAATTGAGCGTATTCCCGTCTGGCGGGTG < SRR4302543.1809448/94‑1 (MQ=60)
GATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGG > SRR4302543.5777399/1‑94 (MQ=60)
ATCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGA < SRR4302543.1687566/94‑1 (MQ=60)
TCGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGAC > SRR4302543.3392302/1‑94 (MQ=60)
CGGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACG > SRR4302543.6352053/1‑94 (MQ=60)
GGGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGA > SRR4302543.5098480/1‑94 (MQ=60)
GGGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGAT < SRR4302543.7589583/94‑1 (MQ=60)
GGGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATA < SRR4302543.2044577/94‑1 (MQ=60)
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ACTGCAAGGGCCGCGTTCTGCCCCGGAATTGCGCCAGCGTCTGGCAATCAGTCAGGCGACGTTCTCACGCCTTGTTGCCAGAGAAGATCGGGTGATTCGCTTTGGTAAAGCACGGGCAACGCGATATGCACTGCTGCGTCCTTATCGCGGAATTGAGCGTATTCCCGTCTGGCGGGTGGACGATA > NC_000913/4619361‑4619545
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
