Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAACTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCTTTA  >  NC_000913/2282756‑2282939
                                                                                           |                                                                                            
CAACTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGT                                                                                            >  SRR4302543.6322336/1‑94 (MQ=60)
 AACTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTT                                                                                           <  SRR4302543.5365960/94‑1 (MQ=60)
 AACTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTT                                                                                           >  SRR4302543.2993250/1‑94 (MQ=60)
 AACTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTT                                                                                           >  SRR4302543.3113474/1‑94 (MQ=60)
  ACTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTT                                                                                          >  SRR4302543.3718153/1‑94 (MQ=60)
   CTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTG                                                                                         >  SRR4302543.737054/1‑94 (MQ=60)
    TGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGC                                                                                        <  SRR4302543.5556455/94‑1 (MQ=60)
     GGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCG                                                                                       >  SRR4302543.3978176/1‑94 (MQ=60)
     GGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCG                                                                                       >  SRR4302543.7265402/1‑94 (MQ=60)
      GTTATCAACCCAGACGAAAATTAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGA                                                                                      <  SRR4302543.5834173/94‑1 (MQ=60)
        TATCACCCCAGGCGACAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCGGGTTATTTTATTGCTTGAACTGGCGTTTGCGACG                                                                                    <  SRR4302543.7402625/94‑1 (MQ=60)
          TCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTG                                                                                  <  SRR4302543.5234605/94‑1 (MQ=60)
          TCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTG                                                                                  <  SRR4302543.324488/94‑1 (MQ=60)
          TCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTG                                                                                  <  SRR4302543.1826288/94‑1 (MQ=60)
           CAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGG                                                                                 >  SRR4302543.937181/1‑94 (MQ=60)
            AACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGA                                                                                <  SRR4302543.2203754/94‑1 (MQ=60)
            AACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGA                                                                                >  SRR4302543.2884904/1‑94 (MQ=60)
             ACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAG                                                                               <  SRR4302543.2598563/94‑1 (MQ=60)
               CCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCT                                                                             <  SRR4302543.5454014/94‑1 (MQ=60)
               CCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCT                                                                             <  SRR4302543.2561128/94‑1 (MQ=60)
                 AGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGG                                                                           <  SRR4302543.7893390/94‑1 (MQ=60)
                 AGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGG                                                                           >  SRR4302543.337568/1‑94 (MQ=60)
                   ACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGTCGGCTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCCGGCA                                                                         >  SRR4302543.2089285/1‑94 (MQ=60)
                    CGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAA                                                                        <  SRR4302543.7135331/94‑1 (MQ=60)
                    CGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAA                                                                        <  SRR4302543.811061/94‑1 (MQ=60)
                     GAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAA                                                                       <  SRR4302543.1648915/94‑1 (MQ=60)
                       AAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAG                                                                     <  SRR4302543.6749661/94‑1 (MQ=60)
                       AAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAG                                                                     >  SRR4302543.1093518/1‑94 (MQ=60)
                       AAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGGTGGCCACGTGGAGCTGGCAAAAG                                                                     >  SRR4302543.1093517/1‑94 (MQ=60)
                         ATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCT                                                                   >  SRR4302543.1247327/1‑94 (MQ=60)
                         ATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCT                                                                   <  SRR4302543.4214084/94‑1 (MQ=60)
                         ATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCT                                                                   >  SRR4302543.3119984/1‑94 (MQ=60)
                            AGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCG                                                                >  SRR4302543.3835632/1‑94 (MQ=60)
                              ATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCA                                                              >  SRR4302543.1284092/1‑94 (MQ=60)
                               TGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAG                                                             <  SRR4302543.7236186/94‑1 (MQ=60)
                                GGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGC                                                            >  SRR4302543.120062/1‑94 (MQ=60)
                                   GCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTG                                                         <  SRR4302543.4744214/94‑1 (MQ=60)
                                   GCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTG                                                         >  SRR4302543.4890376/1‑94 (MQ=60)
                                    CGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGA                                                        >  SRR4302543.4903257/1‑94 (MQ=60)
                                     GCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGAC                                                       <  SRR4302543.4435950/94‑1 (MQ=60)
                                     GCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGAC                                                       <  SRR4302543.6288967/94‑1 (MQ=60)
                                     GCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGAC                                                       <  SRR4302543.3474514/94‑1 (MQ=60)
                                     GCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTCCGCAGCCTGAC                                                       >  SRR4302543.48297/1‑94 (MQ=60)
                                      CGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACG                                                      >  SRR4302543.80136/1‑94 (MQ=60)
                                       GACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGC                                                     <  SRR4302543.281906/94‑1 (MQ=60)
                                       GACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGC                                                     >  SRR4302543.1058876/1‑94 (MQ=60)
                                         CTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGT                                                   >  SRR4302543.6937644/1‑94 (MQ=60)
                                          TGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTC                                                  >  SRR4302543.3886975/1‑94 (MQ=60)
                                          TGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTC                                                  <  SRR4302543.4524911/94‑1 (MQ=60)
                                          TGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTC                                                  >  SRR4302543.7668987/1‑94 (MQ=60)
                                           GGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCG                                                 <  SRR4302543.1500939/94‑1 (MQ=60)
                                             CAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTC                                               <  SRR4302543.5752022/94‑1 (MQ=60)
                                              AGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGTTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCG                                              >  SRR4302543.6965019/1‑94 (MQ=60)
                                              AGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCG                                              >  SRR4302543.6031070/1‑94 (MQ=60)
                                              AGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCG                                              >  SRR4302543.248323/1‑94 (MQ=60)
                                              AGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCG                                              >  SRR4302543.2375253/1‑94 (MQ=60)
                                                 TGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACG                                           >  SRR4302543.5792444/1‑94 (MQ=60)
                                                   ATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCT                                         >  SRR4302543.3718083/1‑94 (MQ=60)
                                                   ATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGATGCGCAGCCTGAAGCGTCGTAGACGCT                                         >  SRR4302543.5902015/1‑94 (MQ=60)
                                                    TGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTT                                        >  SRR4302543.7426115/1‑94 (MQ=60)
                                                    TGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTT                                        >  SRR4302543.7744033/1‑94 (MQ=60)
                                                     GTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTC                                       <  SRR4302543.3609469/94‑1 (MQ=60)
                                                     GTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTC                                       >  SRR4302543.793026/1‑94 (MQ=60)
                                                      TTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCG                                      <  SRR4302543.6793300/94‑1 (MQ=60)
                                                      TTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCG                                      <  SRR4302543.2908432/94‑1 (MQ=60)
                                                       TCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGC                                     <  SRR4302543.5163507/94‑1 (MQ=60)
                                                       TCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGC                                     <  SRR4302543.1390130/94‑1 (MQ=60)
                                                       TCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGC                                     <  SRR4302543.7505346/94‑1 (MQ=60)
                                                       TCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGC                                     >  SRR4302543.7357573/1‑94 (MQ=60)
                                                         ATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGC                                   >  SRR4302543.2239904/1‑94 (MQ=60)
                                                         ATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGC                                   >  SRR4302543.2239903/1‑94 (MQ=60)
                                                         ATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGC                                   >  SRR4302543.5741925/1‑94 (MQ=60)
                                                         ATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGC                                   >  SRR4302543.5083929/1‑94 (MQ=60)
                                                         ATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGC                                   >  SRR4302543.2103144/1‑94 (MQ=60)
                                                          TCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCG                                  <  SRR4302543.7350820/94‑1 (MQ=60)
                                                          TCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCG                                  >  SRR4302543.511543/1‑94 (MQ=60)
                                                          TCAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCG                                  <  SRR4302543.5771535/94‑1 (MQ=60)
                                                           CAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGC                                 >  SRR4302543.5827545/1‑94 (MQ=60)
                                                           CAGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGC                                 >  SRR4302543.2855000/1‑94 (MQ=60)
                                                            AGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCC                                >  SRR4302543.7543723/1‑94 (MQ=60)
                                                            AGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCC                                >  SRR4302543.3856645/1‑94 (MQ=60)
                                                            AGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCC                                >  SRR4302543.6733353/1‑94 (MQ=60)
                                                            AGCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCC                                >  SRR4302543.7360114/1‑94 (MQ=60)
                                                             GCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCC                               <  SRR4302543.3554904/94‑1 (MQ=60)
                                                             GCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCC                               <  SRR4302543.624429/94‑1 (MQ=60)
                                                             GCGTGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCC                               <  SRR4302543.3876566/94‑1 (MQ=60)
                                                                TGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCT                            <  SRR4302543.4662183/94‑1 (MQ=60)
                                                                TGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCT                            <  SRR4302543.4662182/94‑1 (MQ=60)
                                                                TGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCT                            <  SRR4302543.6687292/94‑1 (MQ=60)
                                                                TGCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCT                            >  SRR4302543.5685823/1‑94 (MQ=60)
                                                                 GCCGGTTATTTTATTGCTTGAACTGGCGTTTGCGGCGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTG                           >  SRR4302543.3088505/1‑94 (MQ=60)
                                                                  CCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGG                          <  SRR4302543.881294/94‑1 (MQ=60)
                                                                  CCGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCAGCTGG                          >  SRR4302543.6378056/1‑94 (MQ=60)
                                                                   CGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGC                         >  SRR4302543.7726535/1‑94 (MQ=60)
                                                                   CGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGC                         >  SRR4302543.7516100/1‑94 (MQ=60)
                                                                   CGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGC                         >  SRR4302543.4881770/1‑94 (MQ=60)
                                                                   CGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGC                         <  SRR4302543.2074238/94‑1 (MQ=60)
                                                                   CGGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGC                         >  SRR4302543.2606626/1‑94 (MQ=60)
                                                                   CGGTTATTTTATTGCTTGAACTGGCATTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGC                         >  SRR4302543.7726534/1‑94 (MQ=60)
                                                                    GGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCC                        <  SRR4302543.3571970/94‑1 (MQ=60)
                                                                    GGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCC                        <  SRR4302543.116697/94‑1 (MQ=60)
                                                                    GGTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCC                        >  SRR4302543.584362/1‑94 (MQ=60)
                                                                     GTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCG                       >  SRR4302543.3677421/1‑94 (MQ=60)
                                                                     GTTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCG                       <  SRR4302543.6125090/94‑1 (MQ=60)
                                                                      TTATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGC                      >  SRR4302543.8005084/1‑94 (MQ=60)
                                                                        ATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCAT                    >  SRR4302543.4956674/1‑94 (MQ=60)
                                                                        ATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCAT                    <  SRR4302543.5207343/94‑1 (MQ=60)
                                                                        ATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCAT                    <  SRR4302543.2561470/94‑1 (MQ=60)
                                                                        ATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCAT                    <  SRR4302543.3289125/94‑1 (MQ=60)
                                                                        ATTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCAT                    <  SRR4302543.3396697/94‑1 (MQ=60)
                                                                         TTTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGACGACGCTTCGCGCGCCCGCTGGCCGCATT                   >  SRR4302543.4931362/1‑94 (MQ=60)
                                                                          TTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTC                  <  SRR4302543.2991233/94‑1 (MQ=60)
                                                                          TTTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTC                  <  SRR4302543.5166845/94‑1 (MQ=60)
                                                                           TTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCT                 >  SRR4302543.5193858/1‑94 (MQ=60)
                                                                           TTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCT                 >  SRR4302543.421918/1‑94 (MQ=60)
                                                                           TTATTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCT                 <  SRR4302543.3887939/94‑1 (MQ=60)
                                                                             ATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTA               <  SRR4302543.4837271/94‑1 (MQ=60)
                                                                              TTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTAT              >  SRR4302543.5728526/1‑94 (MQ=60)
                                                                              TTGCTTGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTAT              <  SRR4302543.6487615/94‑1 (MQ=60)
                                                                               TGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGGCCGCTGGCCGCATTCTTATT             >  SRR4302543.4311878/1‑94 (MQ=60)
                                                                               TGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATT             <  SRR4302543.6710535/94‑1 (MQ=60)
                                                                                GCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTT            <  SRR4302543.7575511/94‑1 (MQ=60)
                                                                                 CTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTA           <  SRR4302543.2627912/94‑1 (MQ=60)
                                                                                   TGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATC         >  SRR4302543.3171022/1‑94 (MQ=60)
                                                                                   TGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATC         <  SRR4302543.6260091/94‑1 (MQ=60)
                                                                                   TGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATC         <  SRR4302543.2094065/94‑1 (MQ=60)
                                                                                   TGAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATC         >  SRR4302543.15361/1‑94 (MQ=60)
                                                                                    GAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCG        <  SRR4302543.1068450/94‑1 (MQ=60)
                                                                                    GAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCG        <  SRR4302543.2562681/94‑1 (MQ=60)
                                                                                    GAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCG        <  SRR4302543.6728403/94‑1 (MQ=60)
                                                                                    GAACTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCG        <  SRR4302543.6728401/94‑1 (MQ=60)
                                                                                       CTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCT     >  SRR4302543.5928002/1‑94 (MQ=60)
                                                                                       CTGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATAGCCT     >  SRR4302543.1509521/1‑94 (MQ=60)
                                                                                        TGGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCTT    <  SRR4302543.3037585/94‑1 (MQ=60)
                                                                                         GGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCTTT   >  SRR4302543.5483007/1‑94 (MQ=60)
                                                                                         GGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCTTT   >  SRR4302543.4740515/1‑94 (MQ=60)
                                                                                         GGCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCTTT   <  SRR4302543.7633595/94‑1 (MQ=60)
                                                                                          GCGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCTTTT  >  SRR4302543.1683426/1‑94 (MQ=60)
                                                                                           |                                                                                            
CAACTGGTTATCAACCCAGACGAAAATGAGATGGCGCGCGACTGGCAGCTGATGTTCATCAGCGTGCCGGTTATTTTATTGCTTGAACTGGTGTTTGCGACGTGGAGCTGGCAAAAGCTGCGCAGCCTGACGCGTCGTCGACGCTTCGCGCGCCCGCTGGCCGCATTCTTATTTATCGCCTTTA  >  NC_000913/2282756‑2282939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑