Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCG  >  NC_000913/3941642‑3941817
                                                                                             |                                                                                   
NCGNTNCNGGNTGACAGCCCCNTNCACAAAAATGCACATATTGTGAGCTCGATGAGTNGGGCGNGACACNTGGTATCCTGTCTGAATAT‑GGGGG                                                                                    <  SRR4302543.7660030/94‑1 (MQ=17)
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGG                                                                                    <  SRR4302543.3596570/94‑1 (MQ=21)
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGG                                                                                    >  SRR4302543.2717567/1‑94 (MQ=21)
 CGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGG                                                                                   >  SRR4302543.4143705/1‑94 (MQ=10)
 CGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGG                                                                                   >  SRR4302543.6721738/1‑94 (MQ=10)
 CGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGG                                                                                   >  SRR4302543.2629084/1‑94 (MQ=10)
  GATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGG                                                                                  <  SRR4302543.7670124/94‑1 (MQ=10)
  GATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGA                                                                                 >  SRR4302543.596158/1‑94 (MQ=7)
  GATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGA                                                                                 >  SRR4302543.6104782/1‑94 (MQ=7)
  GATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGA                                                                                 <  SRR4302543.4985335/94‑1 (MQ=7)
  GATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGA                                                                                 >  SRR4302543.94030/1‑94 (MQ=7)
   ATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGA                                                                                 <  SRR4302543.2787963/94‑1 (MQ=10)
   ATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGAC                                                                                >  SRR4302543.4471698/1‑94 (MQ=4)
    TACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACC                                                                               <  SRR4302543.3528679/94‑1 (MQ=2)
      CAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCAT                                                                             <  SRR4302543.2187295/94‑1 (MQ=0)
      CAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCAT                                                                             <  SRR4302543.567958/94‑1 (MQ=0)
       CGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATC                                                                            <  SRR4302543.6590482/94‑1 (MQ=0)
         GGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCC                                                                           >  SRR4302543.1875710/1‑94 (MQ=33)
         GGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCC                                                                           >  SRR4302543.6499484/1‑94 (MQ=33)
         GGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGC‑GGACACGTGGGATCCTGTCTGAATAT‑GGGGGGGACCATCCT                                                                          >  SRR4302543.6499488/1‑94 (MQ=29)
            GACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCC                                                                        <  SRR4302543.357327/94‑1 (MQ=33)
            GACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCA                                                                       >  SRR4302543.3433907/1‑94 (MQ=0)
             ACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAA                                                                      >  SRR4302543.3263199/1‑94 (MQ=0)
              CAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATATGGGGGGGGACCATCCTCCA                                                                       >  SRR4302543.5574461/1‑94 (MQ=8)
              CAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAG                                                                     <  SRR4302543.4455472/94‑1 (MQ=0)
               AGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAG                                                                     <  SRR4302543.5493634/94‑1 (MQ=33)
               AGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGG                                                                    <  SRR4302543.3203073/94‑1 (MQ=0)
                GCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGC                                                                   >  SRR4302543.2709377/1‑94 (MQ=0)
                GCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGCCTGAATAT‑GGG‑GGGACCATCCTCCAAGGC                                                                   >  SRR4302543.6919804/1‑94 (MQ=0)
                 CCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAcggca                                                                  >  SRR4302543.6247405/1‑89 (MQ=0)
                 CCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCT                                                                  >  SRR4302543.391883/1‑94 (MQ=0)
                  CCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTA                                                                 >  SRR4302543.4060206/1‑94 (MQ=0)
                  CCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTA                                                                 >  SRR4302543.4060207/1‑94 (MQ=0)
                  CCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTA                                                                 >  SRR4302543.3897639/1‑94 (MQ=0)
                   CCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAA                                                                <  SRR4302543.7030339/94‑1 (MQ=0)
                   CCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAA                                                                >  SRR4302543.6034650/1‑94 (MQ=0)
                   CCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAA                                                                >  SRR4302543.2129302/1‑94 (MQ=0)
                    CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAA                                                                >  SRR4302543.4238338/1‑94 (MQ=33)
                    CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAA                                                                >  SRR4302543.1585475/1‑94 (MQ=33)
                    CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGTCCATCCTCCAAGGCTAAA                                                               >  SRR4302543.5251421/1‑94 (MQ=0)
                    CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAA                                                               >  SRR4302543.5622993/1‑94 (MQ=0)
                    CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAA                                                               >  SRR4302543.6444665/1‑94 (MQ=0)
                    CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAA                                                               <  SRR4302543.6044415/94‑1 (MQ=0)
                    CGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAA                                                               <  SRR4302543.6044416/94‑1 (MQ=0)
                     GTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAAT                                                              >  SRR4302543.5295596/1‑94 (MQ=0)
                     GTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAAT                                                              >  SRR4302543.5295598/1‑94 (MQ=0)
                     GTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAAT                                                              >  SRR4302543.3716547/1‑94 (MQ=0)
                     GTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAAT                                                              >  SRR4302543.3670260/1‑94 (MQ=0)
                     GTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAAT                                                              <  SRR4302543.2844225/94‑1 (MQ=0)
                      TACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATA                                                             >  SRR4302543.3812593/1‑94 (MQ=0)
                      TACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATA                                                             >  SRR4302543.6623213/1‑94 (MQ=0)
                       ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATAC                                                            >  SRR4302543.3273158/1‑94 (MQ=0)
                       ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATAC                                                            <  SRR4302543.7097235/94‑1 (MQ=0)
                       ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATAC                                                            <  SRR4302543.709091/94‑1 (MQ=0)
                       ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATAC                                                            <  SRR4302543.709090/94‑1 (MQ=0)
                       ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATAC                                                            >  SRR4302543.3490693/1‑94 (MQ=0)
                       ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATAC                                                            <  SRR4302543.2350054/94‑1 (MQ=0)
                       ACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGGATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATAC                                                            >  SRR4302543.7388981/1‑94 (MQ=0)
                         ACAAAAATGCACATATTGTGAGCTCGATGAGGAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATACTC                                                          >  SRR4302543.421878/1‑94 (MQ=0)
                          CAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATACTCC                                                         >  SRR4302543.6442106/1‑94 (MQ=0)
                            AAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCT                                                        <  SRR4302543.3587867/94‑1 (MQ=33)
                            AAAATGCACATATGTTGATCTTGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCT                                                        <  SRR4302543.2771126/94‑1 (MQ=3)
                             AAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTG                                                       <  SRR4302543.4249651/94‑1 (MQ=33)
                              AATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGA                                                      >  SRR4302543.3561371/1‑94 (MQ=33)
                              AATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGAC                                                     <  SRR4302543.6047139/94‑1 (MQ=0)
                              AATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGAC                                                     <  SRR4302543.2494619/94‑1 (MQ=0)
                               ATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACT                                                    >  SRR4302543.5876828/1‑94 (MQ=0)
                               ATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACT                                                    <  SRR4302543.1247072/94‑1 (MQ=0)
                               ATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACT                                                    >  SRR4302543.2273670/1‑94 (MQ=0)
                                TGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGAACCATCCTCCAAGGCTAAATACTCCTGACTG                                                   <  SRR4302543.5788020/94‑1 (MQ=0)
                                 GCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTG                                                   <  SRR4302543.2561013/94‑1 (MQ=28)
                                 GCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGG‑GGGACCATCCTCCAAGGCTAAATACTCCTGACTGC                                                  >  SRR4302543.386574/1‑94 (MQ=0)
                                  CACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGA                                                  >  SRR4302543.1602575/1‑94 (MQ=25)
                                   ACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGCCCATCCTCCAAGGCTAAATACTCCTGACTGAC                                                 >  SRR4302543.2302455/1‑94 (MQ=22)
                                    CATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACC                                                >  SRR4302543.6587377/1‑94 (MQ=20)
                                      TATTGTGAGCTCGATGAGTAGGGCGGGCCACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTTCTGACTGACCGA                                              >  SRR4302543.1904514/1‑94 (MQ=6)
                                       ATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGAT                                             <  SRR4302543.40784/94‑1 (MQ=5)
                                       ATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGAT                                             <  SRR4302543.714245/94‑1 (MQ=5)
                                       ATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGAA                                             >  SRR4302543.4905914/1‑94 (MQ=4)
                                        TTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATA                                            <  SRR4302543.3197298/94‑1 (MQ=2)
                                          GTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGT                                          <  SRR4302543.1356775/94‑1 (MQ=0)
                                          GTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGT                                          <  SRR4302543.6213943/94‑1 (MQ=0)
                                          GTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGT                                          <  SRR4302543.1356776/94‑1 (MQ=0)
                                           TGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTG                                         >  SRR4302543.6616791/1‑94 (MQ=0)
                                             AGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAA                                       <  SRR4302543.7727270/94‑1 (MQ=0)
                                              GCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAAC                                      <  SRR4302543.1295945/94‑1 (MQ=0)
                                              GCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAAC                                      <  SRR4302543.3833765/94‑1 (MQ=0)
                                                TCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCA                                    <  SRR4302543.3109117/94‑1 (MQ=0)
                                                 CGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAG                                   >  SRR4302543.895981/1‑94 (MQ=0)
                                                  GATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGT                                  <  SRR4302543.3624593/94‑1 (MQ=0)
                                                   ATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTA                                 >  SRR4302543.1439530/1‑94 (MQ=0)
                                                       GTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGG                             >  SRR4302543.2733858/1‑94 (MQ=0)
                                                              GGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAA                      >  SRR4302543.7961928/1‑94 (MQ=0)
                                                              GGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAA                      <  SRR4302543.5438751/94‑1 (MQ=0)
                                                              GGGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAA                      >  SRR4302543.7643726/1‑94 (MQ=0)
                                                               GGACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAA                     >  SRR4302543.7402039/1‑94 (MQ=0)
                                                                 ACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGG                   >  SRR4302543.4357767/1‑94 (MQ=0)
                                                                 ACACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGG                   >  SRR4302543.1492064/1‑94 (MQ=0)
                                                                  CACGTGGTATCCTGTCTGAATAT‑GGGGGGGGCCATGCTCCAAGGCTAAATACTCCTGACTGACCGACAGTGAACCAGTACCGTGAGGGAAAGGC                  >  SRR4302543.4494664/1‑94 (MQ=0)
                                                                   ACGTGGTATCCTGTCTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCG                 >  SRR4302543.7451500/1‑94 (MQ=0)
                                                                   ACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCG                 >  SRR4302543.686404/1‑94 (MQ=0)
                                                                   ACGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCG                 >  SRR4302543.686405/1‑94 (MQ=0)
                                                                    CGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGA                >  SRR4302543.1471703/1‑94 (MQ=0)
                                                                    CGTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGA                <  SRR4302543.6965920/94‑1 (MQ=0)
                                                                     gggtTATCCTGTCTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAA               <  SRR4302543.6510904/90‑1 (MQ=0)
                                                                     GTGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATTCTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAA               <  SRR4302543.800709/94‑1 (MQ=0)
                                                                      TGGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAA              >  SRR4302543.4301737/1‑94 (MQ=0)
                                                                       GGTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAA             >  SRR4302543.4186168/1‑94 (MQ=0)
                                                                        GTATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAG            >  SRR4302543.888119/1‑94 (MQ=0)
                                                                         TATCCTGTATGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGA           >  SRR4302543.3710881/1‑94 (MQ=0)
                                                                          ATCCTGTCTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAA          >  SRR4302543.5912509/1‑94 (MQ=0)
                                                                          ATCCTGTCTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAA          <  SRR4302543.3880462/94‑1 (MQ=0)
                                                                          ATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAA          >  SRR4302543.5381739/1‑94 (MQ=0)
                                                                          ATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAA          >  SRR4302543.786832/1‑94 (MQ=0)
                                                                          ATCCTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAA          >  SRR4302543.5381738/1‑94 (MQ=0)
                                                                          ATCCTGTCGGGATAT‑GGGGGGGGCCATCATCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAA          <  SRR4302543.3880685/94‑1 (MQ=0)
                                                                             CTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCC       >  SRR4302543.5015157/1‑94 (MQ=0)
                                                                             CTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCC       <  SRR4302543.4607398/94‑1 (MQ=0)
                                                                             CTGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCC       >  SRR4302543.5015158/1‑94 (MQ=0)
                                                                              TGTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCC      <  SRR4302543.813228/94‑1 (MQ=0)
                                                                               GTCTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGACCCCCG     >  SRR4302543.3705144/1‑94 (MQ=0)
                                                                               GTCTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCG     <  SRR4302543.7197024/94‑1 (MQ=0)
                                                                               GTCTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCG     <  SRR4302543.165561/94‑1 (MQ=0)
                                                                               GTCTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCG     <  SRR4302543.2606469/94‑1 (MQ=0)
                                                                                 CTGAATAT‑GGGGGGGGCCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGC   >  SRR4302543.2830442/1‑94 (MQ=0)
                                                                                 CTGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGC   >  SRR4302543.3517227/1‑94 (MQ=0)
                                                                                  TGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCG  <  SRR4302543.3473216/94‑1 (MQ=0)
                                                                                  TGAATAT‑GGGGGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCG  <  SRR4302543.2073861/94‑1 (MQ=0)
                                                                                             |                                                                                   
GCGATACAGGGTGACAGCCCCGTACACAAAAATGCACATATTGTGAGCTCGATGAGTAGGGCGGGACACGTGGTATCCTGTCTGAATAT‑GGGAGGGACCATCCTCCAAGGCTAAATACTCCTGACTGACCGATAGTGAACCAGTACCGTGAGGGAAAGGCGAAAAGAACCCCGGCG  >  NC_000913/3941642‑3941817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑