Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
80,603 |
(T)5→6 |
coding (262/1401 nt) |
leuC ← |
3‑isopropylmalate isomerase (dehydratase) subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 80,598 | 1 | . | T | 98.0%
| 720.7
/ 4.3
| 203 | coding (267/1401 nt) | leuC | 3‑isopropylmalate isomerase (dehydratase) subunit |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base T (101/98); total (102/101) |
| Fisher's exact test for biased strand distribution p-value = 3.69e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 230 total aligned reads displayed.
GGCAAGGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑TTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATG > NC_000913/80506‑80685
|
gCAAGGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑t < 2:4043487/93‑1 (MQ=255)
cAAGGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑tt < 1:2373632/93‑1 (MQ=255)
aaGGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑ttt > 2:2984783/1‑93 (MQ=255)
aaGGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑ttt > 1:182608/1‑93 (MQ=255)
aGGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑ttt‑t > 1:1618561/1‑93 (MQ=255)
gTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑ttt‑ttt < 2:1351715/93‑2 (MQ=255)
gTGACGCCCGGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑ttt‑ttt < 1:1068008/93‑2 (MQ=255)
gACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑ttt‑tttga < 2:4062201/93‑4 (MQ=255)
gACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑ttt‑tttga > 2:4373653/1‑90 (MQ=255)
aCGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑ttt‑tttgat < 2:2215500/93‑5 (MQ=255)
gCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCa < 1:669944/93‑1 (MQ=255)
cccTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAg > 1:4000038/1‑93 (MQ=255)
cccTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAg < 2:2236117/93‑1 (MQ=255)
ccTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGt > 1:1359759/1‑93 (MQ=255)
cTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGtt < 1:3413257/93‑1 (MQ=255)
tGTTCCGGCCCCATTACGTGGACGATCCCCTGATACTGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTc < 2:1911010/93‑1 (MQ=255)
gTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTcc < 2:3412711/93‑1 (MQ=255)
ttCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCt < 1:1151830/93‑1 (MQ=255)
tCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTg > 1:927427/1‑93 (MQ=255)
ccGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTga > 1:886715/1‑92 (MQ=255)
cGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCa < 1:610251/93‑1 (MQ=255)
cGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCa < 2:3135391/93‑1 (MQ=255)
gCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATc > 1:3228734/1‑93 (MQ=255)
gCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATc > 2:897379/1‑93 (MQ=255)
cccATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTg < 1:4576995/93‑1 (MQ=255)
cccATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTg > 2:1455991/1‑93 (MQ=255)
cccATTACGTGGACGATCCCCTGATACGGGGGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTg > 2:3795236/1‑93 (MQ=255)
cATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGa < 2:1216540/93‑1 (MQ=255)
aTTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGAt < 2:1500825/93‑1 (MQ=255)
aTTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGAt < 1:4144151/93‑1 (MQ=255)
aTTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGAt < 2:171113/93‑1 (MQ=255)
aTTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGAt > 1:3814497/1‑93 (MQ=255)
aTTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGAt < 1:2197244/93‑1 (MQ=255)
ttACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCCTCTGGATa < 2:4554293/93‑1 (MQ=255)
ttACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATa > 1:1930162/1‑93 (MQ=255)
aCGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATAcg > 2:2504327/1‑93 (MQ=255)
cGTGGACGATCCCCTGATACGGGTGATTCAGGTCATAAAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATAcgc > 2:473371/1‑93 (MQ=255)
gTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATAcgcg > 1:4058857/1‑93 (MQ=255)
aCGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCAt > 1:4441427/1‑93 (MQ=255)
cGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCAtt < 2:3494476/93‑1 (MQ=255)
cGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCAtt > 1:1463239/1‑93 (MQ=255)
gATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCAttt > 1:340273/1‑93 (MQ=255)
aTCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTc < 2:2702023/93‑1 (MQ=255)
aTCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTc > 2:3270554/1‑93 (MQ=255)
aTCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTc > 1:4365146/1‑93 (MQ=255)
aTCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTc < 2:830864/93‑1 (MQ=255)
ccccTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCAc < 1:1120506/93‑1 (MQ=255)
ccTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCg < 2:4640090/93‑1 (MQ=255)
ccTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCg > 2:1313988/1‑93 (MQ=255)
cTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGc > 2:2336122/1‑93 (MQ=255)
cTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGc > 1:1545153/1‑93 (MQ=255)
aTACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAgg > 1:2966367/1‑93 (MQ=255)
aTACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAgg < 2:750968/93‑1 (MQ=255)
tACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGc > 2:1100748/1‑93 (MQ=255)
tACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGc > 1:3492020/1‑93 (MQ=255)
aCGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCa > 2:3532084/1‑93 (MQ=255)
ggggGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCAtt > 1:2465370/1‑93 (MQ=255)
gggTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCAtt < 1:334289/93‑1 (MQ=255)
gggTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCAtt > 1:3526979/1‑93 (MQ=255)
gTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTaa < 1:4502256/93‑1 (MQ=255)
gTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTaa < 1:4324839/93‑1 (MQ=255)
gATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATg < 1:696499/93‑1 (MQ=255)
gATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATg < 2:4236706/93‑1 (MQ=255)
tCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑TTTCTTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCt < 1:829614/93‑1 (MQ=255)
tCAGGTCATACAGTTCGACGCCAAATTCTTCGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCt < 1:4033379/93‑1 (MQ=255)
gTCATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTgg < 2:652955/93‑1 (MQ=255)
tCATACAGTTCGACGCCAACTTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTCATGTCTTTGGt > 1:2058011/1‑93 (MQ=255)
cATACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTc < 2:2763783/93‑1 (MQ=255)
aTACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCt > 2:1430409/1‑93 (MQ=255)
aTACAGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCt > 2:859160/1‑93 (MQ=255)
aGTTCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGt < 1:2699568/93‑1 (MQ=255)
ttCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTag > 1:2587171/1‑93 (MQ=255)
ttCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTag < 1:1963422/93‑1 (MQ=255)
tCGACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTaga < 1:733016/93‑1 (MQ=255)
gACGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAgaga < 2:319107/93‑1 (MQ=255)
aCGCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGAc < 2:541702/93‑1 (MQ=255)
gCCAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGt > 2:1195074/1‑93 (MQ=255)
ccAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGtt > 2:3306237/1‑93 (MQ=255)
ccAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGtt < 2:4190739/93‑1 (MQ=255)
ccAAATTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGtt > 2:591636/1‑93 (MQ=255)
aaaTTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTtgt > 1:4105275/1‑93 (MQ=255)
aaaTTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTtgt > 2:4244510/1‑93 (MQ=255)
aaTTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTtgtg > 1:4369721/1‑93 (MQ=255)
aTTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGa > 2:772445/1‑93 (MQ=255)
aTTCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGACTTTGGTCTGGGTAGAGACGTTGTGa > 2:3885359/1‑93 (MQ=255)
ttCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGAt > 2:4484177/1‑93 (MQ=255)
ttCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGAt > 2:159709/1‑93 (MQ=255)
tCTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATc > 1:2398539/1‑93 (MQ=255)
cTTTGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATcc > 1:3649031/1‑93 (MQ=255)
tttGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCa < 2:682753/93‑1 (MQ=255)
tttGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCa > 1:284493/1‑93 (MQ=255)
tttGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCa > 1:2320562/1‑93 (MQ=255)
tttGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCa < 2:4425452/93‑1 (MQ=255)
tttGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCa > 1:2576540/1‑93 (MQ=255)
tttGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCa > 2:3348632/1‑93 (MQ=255)
tttGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCa > 1:3907259/1‑93 (MQ=255)
tGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATg > 1:2284589/1‑93 (MQ=255)
tGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATg > 1:3386332/1‑93 (MQ=255)
tGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATg < 2:3280765/93‑1 (MQ=255)
tGCAGTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATg < 2:946775/93‑1 (MQ=255)
|
GGCAAGGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCAG‑TTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATG > NC_000913/80506‑80685
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑G‑TTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGCGAAGGT > NC_000913/80511‑80696
|
gacgaacCCCTGGTCCGGCCGCATTACGTGGACGATCCCCTGATACGGGGGATTCAGGTCATCCAGTTCGACGCCAAATTCTTTGCA‑G‑TTT‑TTT < SRR4302535.960774/87‑1 (MQ=60)
GTGACGCCCGGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑G‑TTT‑TTtg < SRR4302535.1075603/94‑3 (MQ=60)
TGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑G‑TTT‑TTtga < SRR4302535.1994166/94‑4 (MQ=60)
GACTCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGAT < SRR4302535.4410146/94‑1 (MQ=60)
ACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGTTGTTTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATC > SRR4302535.4718564/1‑94 (MQ=60)
CGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCA < SRR4302535.1080240/94‑1 (MQ=60)
CGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCA < SRR4302535.759515/94‑1 (MQ=60)
CGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCA < SRR4302535.345486/94‑1 (MQ=60)
GCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAG < SRR4302535.674620/94‑1 (MQ=60)
GCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAG < SRR4302535.4068391/94‑1 (MQ=60)
GCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAG > SRR4302535.4027404/1‑94 (MQ=60)
CCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGT > SRR4302535.1369483/1‑94 (MQ=60)
CCCTGTGCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGT < SRR4302535.792110/94‑1 (MQ=60)
CTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTC < SRR4302535.3437006/94‑1 (MQ=60)
TGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCC < SRR4302535.685753/94‑1 (MQ=60)
GTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACTCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCT < SRR4302535.2345730/94‑1 (MQ=60)
GTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCT < SRR4302535.144940/94‑1 (MQ=60)
TTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTG < SRR4302535.18686/94‑1 (MQ=60)
TTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTG < SRR4302535.1160057/94‑1 (MQ=60)
TTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTG > SRR4302535.933993/1‑94 (MQ=60)
TCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGA > SRR4302535.892995/1‑94 (MQ=60)
CCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCA < SRR4302535.872430/94‑1 (MQ=60)
CCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCA > SRR4302535.4076578/1‑94 (MQ=60)
CGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCAT < SRR4302535.614502/94‑1 (MQ=60)
GGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATC > SRR4302535.3251107/1‑94 (MQ=60)
GCCCCATTACGTGGACGATCCCCTGATCCGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCCTCT < SRR4302535.4714148/94‑1 (MQ=60)
CCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTG < SRR4302535.2557346/94‑1 (MQ=60)
CCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTG > SRR4302535.2237362/1‑94 (MQ=60)
CCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTG < SRR4302535.1555227/94‑1 (MQ=60)
CCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGG < SRR4302535.4608180/94‑1 (MQ=60)
CCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGGCATACAGCTCGACCCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGT > SRR4302535.4168148/1‑94 (MQ=60)
CATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGAT > SRR4302535.3840816/1‑94 (MQ=60)
ATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATA < SRR4302535.4172528/94‑1 (MQ=60)
ATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATA < SRR4302535.2212903/94‑1 (MQ=60)
ATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATA > SRR4302535.1944072/1‑94 (MQ=60)
TTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATAC > SRR4302535.4108568/1‑94 (MQ=60)
TTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATAC < SRR4302535.4297271/94‑1 (MQ=60)
ACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGC > SRR4302535.1686802/1‑94 (MQ=60)
CGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCG > SRR4302535.4086637/1‑94 (MQ=60)
CGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCG > SRR4302535.4149248/1‑94 (MQ=60)
GACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCAT > SRR4302535.4471879/1‑94 (MQ=60)
ACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATT > SRR4302535.1473724/1‑94 (MQ=60)
CGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTT > SRR4302535.206518/1‑94 (MQ=60)
CGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTT > SRR4302535.342634/1‑94 (MQ=60)
GATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTC > SRR4302535.4395017/1‑94 (MQ=60)
GATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTC > SRR4302535.2710131/1‑94 (MQ=60)
GATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTC > SRR4302535.1144062/1‑94 (MQ=60)
ATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCA > SRR4302535.2343915/1‑94 (MQ=60)
CCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACC < SRR4302535.1128497/94‑1 (MQ=60)
CCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGC > SRR4302535.1556280/1‑94 (MQ=60)
CCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGC > SRR4302535.3421406/1‑94 (MQ=60)
GATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGG < SRR4302535.2948018/94‑1 (MQ=60)
GATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGG > SRR4302535.2987178/1‑94 (MQ=60)
GATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGG < SRR4302535.13808/94‑1 (MQ=60)
GATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGG < SRR4302535.1766047/94‑1 (MQ=60)
GATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGG < SRR4302535.3643298/94‑1 (MQ=60)
ATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGC > SRR4302535.3516285/1‑94 (MQ=60)
TACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGGTACGCGCCATTTCACCGCAGGCG > SRR4302535.4048473/1‑94 (MQ=60)
tcaggttATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCAT < SRR4302535.3451475/87‑1 (MQ=60)
ACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCAT < SRR4302535.4423192/94‑1 (MQ=60)
CGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATT > SRR4302535.3551471/1‑94 (MQ=60)
CGGGGGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATT > SRR4302535.2483146/1‑94 (MQ=60)
GGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTA < SRR4302535.336602/94‑1 (MQ=60)
GGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTA > SRR4302535.3706409/1‑94 (MQ=60)
GGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAA < SRR4302535.239237/94‑1 (MQ=60)
GTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAAT < SRR4302535.4533173/94‑1 (MQ=60)
GTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAAT < SRR4302535.4354418/94‑1 (MQ=60)
TGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCT‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATG > SRR4302535.3509791/1‑94 (MQ=60)
GATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGT < SRR4302535.701384/94‑1 (MQ=60)
GATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGT > SRR4302535.3403546/1‑94 (MQ=60)
TCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑G‑TTTCTTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTT < SRR4302535.835425/94‑1 (MQ=60)
TCAGGTCATACAGTTCGACGCCAAATTCTTCGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTT < SRR4302535.4060972/94‑1 (MQ=60)
CAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTT < SRR4302535.2833454/94‑1 (MQ=60)
CAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTT < SRR4302535.4208176/94‑1 (MQ=60)
CAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTT < SRR4302535.2824354/94‑1 (MQ=60)
CAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑G‑TTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTG < SRR4302535.3988174/94‑1 (MQ=60)
AGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTG < SRR4302535.219173/94‑1 (MQ=60)
AGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTG < SRR4302535.2305779/94‑1 (MQ=60)
AGGTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTG < SRR4302535.1562457/94‑1 (MQ=60)
GTCATACAGTTCGACGCCAACTTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTCATGTCTTTGGT > SRR4302535.2072838/1‑94 (MQ=60)
GTCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGT < SRR4302535.3540692/94‑1 (MQ=60)
TCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTC > SRR4302535.723282/1‑94 (MQ=60)
TCATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTC > SRR4302535.4397202/1‑94 (MQ=60)
ATACAGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTG > SRR4302535.669678/1‑94 (MQ=60)
AGTTCGACGCCAAATTCTTTGCATT‑TTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTA < SRR4302535.920906/94‑1 (MQ=60)
AGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTA > SRR4302535.3404793/1‑94 (MQ=60)
AGTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTA < SRR4302535.2718860/94‑1 (MQ=60)
GTTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAG > SRR4302535.2605750/1‑94 (MQ=60)
TTCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGA < SRR4302535.1977579/94‑1 (MQ=60)
TCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAG < SRR4302535.3112410/94‑1 (MQ=60)
TCGACGCCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAG < SRR4302535.738164/94‑1 (MQ=60)
CCAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTG < SRR4302535.450612/94‑1 (MQ=60)
CAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGT > SRR4302535.623514/1‑94 (MQ=60)
CAAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGT > SRR4302535.4133381/1‑94 (MQ=60)
AAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTG > SRR4302535.4399626/1‑94 (MQ=60)
AAATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTG < SRR4302535.2471074/94‑1 (MQ=60)
AATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGA > SRR4302535.1251321/1‑94 (MQ=60)
AATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGA > SRR4302535.3293872/1‑94 (MQ=60)
ATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGAT < SRR4302535.252838/94‑1 (MQ=60)
ATTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGAT > SRR4302535.3691963/1‑94 (MQ=60)
TTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATC > SRR4302535.3436008/1‑94 (MQ=60)
TTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATC > SRR4302535.2415785/1‑94 (MQ=60)
TTCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATC > SRR4302535.2604912/1‑94 (MQ=60)
TCTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCC > SRR4302535.3674297/1‑94 (MQ=60)
CTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCA > SRR4302535.2595058/1‑94 (MQ=60)
CTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCA > SRR4302535.3934028/1‑94 (MQ=60)
CTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCA > SRR4302535.286480/1‑94 (MQ=60)
CTTTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCA > SRR4302535.2337172/1‑94 (MQ=60)
TTTGCA‑GTTTT‑TTGATCAGTTCCTGCCTCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCAT < SRR4302535.1082296/94‑1 (MQ=60)
TTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATG > SRR4302535.2300909/1‑94 (MQ=60)
TTGCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATG > SRR4302535.3409896/1‑94 (MQ=60)
GCA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGT > SRR4302535.4114002/1‑94 (MQ=60)
CA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTA < SRR4302535.301161/94‑1 (MQ=60)
CA‑GTTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTA < SRR4302535.4156511/94‑1 (MQ=60)
agtTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAG < SRR4302535.976143/91‑1 (MQ=60)
gtTTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGC < SRR4302535.4668647/92‑1 (MQ=60)
T‑TTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGGCTGGGTAGAGACGTTGTGATCCATGGTAGCG > SRR4302535.994063/1‑94 (MQ=60)
TT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGCGAA < SRR4302535.1516290/94‑1 (MQ=60)
T‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGCGAAG < SRR4302535.3626461/94‑1 (MQ=60)
TGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGCGAAGGT < SRR4302535.699699/94‑1 (MQ=60)
TGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGCGAAGGT < SRR4302535.3618491/94‑1 (MQ=60)
|
GGTGACGCCCTGTTCCGGCCCCATTACGTGGACGATCCCCTGATACGGGTGATTCAGGTCATACAGTTCGACGCCAAATTCTTTGCA‑G‑TTT‑TTGATCAGTTCCTGCATCTGGATACGCGCCATTTCACCGCAGGCATTAATGTCTTTGGTCTGGGTAGAGACGTTGTGATCCATGGTAGCGAAGGT > NC_000913/80511‑80696
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
