Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
83,384 |
A→G |
V49A (GTC→GCC) |
leuA ← |
2‑isopropylmalate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 83,384 | 0 | A | G | 99.2%
| 809.2
/ ‑3.8
| 262 | V49A (GTC→GCC) | leuA | 2‑isopropylmalate synthase |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (124/136); total (125/137) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 |
Only 100 of 272 total aligned reads displayed.
TTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGT > NC_000913/83294‑83473
|
ttCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCggg < 1:370432/93‑1 (MQ=255)
ttCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCggg > 1:320398/1‑93 (MQ=255)
ttCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCggg < 2:2877783/93‑1 (MQ=255)
cACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGaa > 1:4112565/1‑93 (MQ=255)
cACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGaa < 2:6844268/93‑1 (MQ=255)
cACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGGTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCggggta > 1:5172545/1‑91 (MQ=255)
aCGCCGAGAGCTAACGCACATACGCCGCTGTTCTTAACCTGCCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGaaa < 2:1779711/93‑1 (MQ=255)
aCGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGaaa < 1:1615654/93‑1 (MQ=255)
cGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAc < 1:5806790/93‑1 (MQ=255)
gCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAcc > 2:2679042/1‑93 (MQ=255)
gCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAcc < 2:6357730/93‑1 (MQ=255)
cAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCg > 1:2059789/1‑93 (MQ=255)
gCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCCAc > 2:3226282/1‑93 (MQ=255)
gCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAc > 1:1126296/1‑93 (MQ=255)
gCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAc > 2:735441/1‑93 (MQ=255)
gCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAc > 1:1706862/1‑93 (MQ=255)
gCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAc < 2:2295577/93‑1 (MQ=255)
gCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAc < 2:3843906/93‑1 (MQ=255)
cGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACt < 1:5197706/93‑1 (MQ=255)
gAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACtt > 2:3938678/1‑93 (MQ=255)
aGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTc > 1:2311431/1‑93 (MQ=255)
gCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAccttc > 2:138293/1‑89 (MQ=255)
gCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTcc < 1:1479973/93‑1 (MQ=255)
gCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTcc < 1:5585016/93‑1 (MQ=255)
gCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAACGCATTcc > 2:1329903/1‑93 (MQ=255)
cTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCa > 1:7576953/1‑93 (MQ=255)
tAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCTACGTCCAt > 2:2556443/1‑93 (MQ=255)
aCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCa < 2:5033217/93‑1 (MQ=255)
aCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCa < 1:635161/93‑1 (MQ=255)
aCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCa < 1:4283317/93‑1 (MQ=255)
cGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCAc < 1:2638790/93‑1 (MQ=255)
gCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACg > 2:875191/1‑93 (MQ=255)
acaTACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGAGAAACCGCCTTCCATCACGTc > 1:7437607/1‑93 (MQ=255)
caTACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGTGGGAACCGACTTCCCTCACGTCa > 2:4370418/1‑93 (MQ=255)
tACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCCCGTCCac > 1:6983589/1‑93 (MQ=255)
tACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAac < 2:7744981/93‑1 (MQ=255)
aCGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGACGAGACGGGGAAACCGACTTCCATCACGTCAaca > 1:7639965/1‑93 (MQ=255)
gCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCAt > 1:1298571/1‑93 (MQ=255)
cTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATa < 2:2139513/93‑1 (MQ=255)
tGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAc < 1:5283659/93‑1 (MQ=255)
tttttAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGc < 1:878031/93‑1 (MQ=255)
cgtttAACCTGGCGGGCGATGGGTTGCACCGACTCAAAATCGCCCGGCGAAGAGGCGGGGTAACCGACTGCCACCACGTCAAAACCCACACGc > 1:7020048/3‑93 (MQ=255)
ttttAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCt > 2:4407632/1‑93 (MQ=255)
ttAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTTCATCACGTCAACACCCATACGCTCa > 1:2609595/1‑93 (MQ=255)
ttAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCa < 1:6504786/93‑1 (MQ=255)
tAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCat < 1:5360741/93‑2 (MQ=255)
aaCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAg < 2:6740254/93‑1 (MQ=255)
aCCTGTCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAgg < 2:2011755/93‑1 (MQ=255)
aCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAgg < 1:2614840/93‑1 (MQ=255)
aCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAgg < 1:2902641/93‑1 (MQ=255)
aCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAgg > 2:6416076/1‑93 (MQ=255)
ccTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAagg > 1:3149090/1‑93 (MQ=255)
tGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGcc > 1:7241283/1‑93 (MQ=255)
tGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGcc < 2:4172984/93‑1 (MQ=255)
tGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGcc < 1:386727/93‑1 (MQ=255)
ggcgggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCa < 1:5569327/93‑1 (MQ=255)
gcgggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAg > 2:6058946/1‑93 (MQ=255)
gcgggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAg < 2:5226645/93‑1 (MQ=255)
gcgggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAg < 1:7165418/93‑1 (MQ=255)
gggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCCgcc > 1:5977677/1‑92 (MQ=255)
gggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAgcg < 1:3047155/93‑1 (MQ=255)
ggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAgcgc > 1:4723167/1‑93 (MQ=255)
gcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCa > 2:4872960/1‑93 (MQ=255)
gATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAt < 2:3364405/93‑1 (MQ=255)
tGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAttt > 1:1907181/1‑93 (MQ=255)
tttGCACCGATTGAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCa < 2:5314907/93‑1 (MQ=255)
tttGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCa < 2:1027177/93‑1 (MQ=255)
tttGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCa > 2:3280144/1‑93 (MQ=255)
tGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGt > 1:244182/1‑93 (MQ=255)
gCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGtt < 1:7437832/93‑1 (MQ=255)
gCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGtt > 2:2952141/1‑93 (MQ=255)
cACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGttt < 1:3620458/93‑1 (MQ=255)
cACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGttt > 1:232943/1‑93 (MQ=255)
aCCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGtttt > 2:5419020/1‑93 (MQ=255)
ccGATTCAAAATCGCCCGGCGAAGAGGCGGGGACACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGttttt < 1:796076/93‑1 (MQ=255)
ccGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGttttt > 1:7491325/1‑93 (MQ=255)
cGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCTACACCCATACGCTCAAGGGCCAGTGTAACTTGCAttttctt > 2:7032619/1‑90 (MQ=255)
cGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTtttc < 2:7260223/93‑1 (MQ=255)
cGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTtttc < 2:5917733/93‑1 (MQ=255)
gATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTtttct < 2:3610634/93‑1 (MQ=255)
gATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTtttct > 1:4596027/1‑93 (MQ=255)
ttCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGACAGCGCAATTTGCAGTTtttcttt < 1:32226/93‑1 (MQ=255)
tCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTtttctttc < 1:5445715/93‑1 (MQ=255)
cAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCAATACGCTCAAGGGCCAGCGCAATTTGCAGTCTTTCTCTca > 2:1228894/1‑93 (MQ=255)
aaaTCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTcaca > 2:6126809/1‑93 (MQ=255)
aaTCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCacac < 2:6813135/93‑1 (MQ=255)
cGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCa < 1:2821986/93‑1 (MQ=255)
gCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCaa < 2:1276790/93‑1 (MQ=255)
gCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCaa > 1:1222352/1‑93 (MQ=255)
gCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCaa < 1:3302169/93‑1 (MQ=255)
cccGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAg < 1:4893930/93‑1 (MQ=255)
cGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCCAGCt > 2:2240498/1‑93 (MQ=255)
cGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCt < 1:3913693/93‑1 (MQ=255)
gCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTg < 1:2708508/93‑1 (MQ=255)
gAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGGCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTggc > 1:348212/1‑91 (MQ=255)
aaGAGGCGGGGAAACCGCCTTCCATCACGTCAACACCCATACCCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCt > 1:2189016/1‑93 (MQ=255)
agagGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTg > 2:5788394/1‑93 (MQ=255)
agagGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTg > 1:6103603/1‑93 (MQ=255)
agagGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTg > 2:7423602/1‑93 (MQ=255)
agagGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTg < 1:1003659/93‑1 (MQ=255)
|
TTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGT > NC_000913/83294‑83473
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCTTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAACG > NC_000913/83291‑83477
|
TCTTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGG > SRR4302543.5604540/1‑94 (MQ=60)
CTTTTTCCACGCAGCGAGCTAACGCACATACGCGTCTGTTTTTAGCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGC < SRR4302543.3191784/94‑1 (MQ=60)
CTTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGC > SRR4302543.6820409/1‑94 (MQ=60)
TTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCG < SRR4302543.5692566/94‑1 (MQ=60)
TTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGG < SRR4302543.3282385/94‑1 (MQ=60)
TTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGG > SRR4302543.323296/1‑94 (MQ=60)
TTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGG < SRR4302543.3614874/94‑1 (MQ=60)
TTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGG < SRR4302543.373841/94‑1 (MQ=60)
CCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAA > SRR4302543.4149594/1‑94 (MQ=60)
CCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGGTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGTA > SRR4302543.5219259/1‑94 (MQ=60)
CACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAA > SRR4302543.5889123/1‑94 (MQ=60)
ACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAC < SRR4302543.1630057/94‑1 (MQ=60)
ACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGAGGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAAC > SRR4302543.3079854/1‑94 (MQ=60)
CGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACC < SRR4302543.5859604/94‑1 (MQ=60)
CGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACC < SRR4302543.7602536/94‑1 (MQ=60)
CGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACC > SRR4302543.2912482/1‑94 (MQ=60)
GCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCG > SRR4302543.2078216/1‑94 (MQ=60)
CAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGA > SRR4302543.874294/1‑94 (MQ=60)
CAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGA > SRR4302543.5202339/1‑94 (MQ=60)
AGCGAGCTAGCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAC < SRR4302543.5241175/94‑1 (MQ=60)
AGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAC > SRR4302543.1136516/1‑94 (MQ=60)
AGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAC > SRR4302543.1722142/1‑94 (MQ=60)
AGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAC < SRR4302543.5241174/94‑1 (MQ=60)
AGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGAC > SRR4302543.2146844/1‑94 (MQ=60)
CGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTT > SRR4302543.7035150/1‑94 (MQ=60)
CGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTT < SRR4302543.5244573/94‑1 (MQ=60)
GAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTC > SRR4302543.2332464/1‑94 (MQ=60)
AGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCC < SRR4302543.1785727/94‑1 (MQ=60)
GCTAACGCACATGCGCGGCTGTTTTTCCCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCA < SRR4302543.7077977/94‑1 (MQ=60)
GCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCA > SRR4302543.7649009/1‑94 (MQ=60)
GCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCA < SRR4302543.5635887/94‑1 (MQ=60)
GCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCA > SRR4302543.2349193/1‑94 (MQ=60)
GCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCA < SRR4302543.1493304/94‑1 (MQ=60)
TAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATC > SRR4302543.1280010/1‑94 (MQ=60)
TAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATC < SRR4302543.5927595/94‑1 (MQ=60)
ACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCAC < SRR4302543.4322249/94‑1 (MQ=60)
ACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCAC < SRR4302543.640966/94‑1 (MQ=60)
ACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCAC < SRR4302543.1162638/94‑1 (MQ=60)
CGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACG < SRR4302543.2288989/94‑1 (MQ=60)
CGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACG < SRR4302543.7301296/94‑1 (MQ=60)
CGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACG < SRR4302543.2662686/94‑1 (MQ=60)
CACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCCTCACGTC > SRR4302543.7509053/1‑94 (MQ=60)
CACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTC > SRR4302543.6268360/1‑94 (MQ=60)
CACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAACGACTTCCATCACGca > SRR4302543.7508900/1‑92 (MQ=60)
CACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGAGAAACCGCCTTCCATCACGTC > SRR4302543.7508901/1‑94 (MQ=60)
ACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCTTCACATCA > SRR4302543.6928978/1‑94 (MQ=60)
ATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAATCGACTTCCctcaaggccaa > SRR4302543.3221139/1‑83 (MQ=60)
ATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCCCGTCCAC > SRR4302543.7049315/1‑94 (MQ=60)
ATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAAC > SRR4302543.7584887/1‑94 (MQ=60)
ATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAAC > SRR4302543.3221138/1‑94 (MQ=60)
ATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAAC < SRR4302543.1628359/94‑1 (MQ=60)
TACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGACGAGACGGGGAAACCGACTTCCATCACGTCAACA > SRR4302543.7712438/1‑94 (MQ=60)
ACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACAC < SRR4302543.7199248/94‑1 (MQ=60)
GGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCAT > SRR4302543.1310111/1‑94 (MQ=60)
GGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCAT > SRR4302543.3382826/1‑94 (MQ=60)
CTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAC < SRR4302543.65273/94‑1 (MQ=60)
CTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAC < SRR4302543.6072262/94‑1 (MQ=60)
CTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAC < SRR4302543.3232271/94‑1 (MQ=60)
CTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAC > SRR4302543.7760805/1‑94 (MQ=60)
TGTTTTTATCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACCCCCATACG < SRR4302543.1939742/94‑1 (MQ=60)
TGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACG < SRR4302543.5331344/94‑1 (MQ=60)
TGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACC > SRR4302543.5359857/1‑94 (MQ=60)
gcgTTTAACCTGGCGGGCGATGGGTTGCACCGACTCAAAATCGCCCGGCGAAGAGGCGGGGTAACCGACTGCCACCACGTCAAAACCCACACGC > SRR4302543.7087238/4‑94 (MQ=59)
GTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGC > SRR4302543.4791429/1‑94 (MQ=60)
TTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCT < SRR4302543.885830/94‑1 (MQ=60)
TTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTTCATCACGTCAACACCCATACGCTCA > SRR4302543.2633288/1‑94 (MQ=60)
TTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAA < SRR4302543.6566063/94‑1 (MQ=60)
TTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAA > SRR4302543.2579938/1‑94 (MQ=60)
TAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCATG < SRR4302543.5409255/94‑1 (MQ=60)
TAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAG > SRR4302543.2983639/1‑94 (MQ=60)
TAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAG < SRR4302543.5711875/94‑1 (MQ=60)
AACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGG < SRR4302543.2822891/94‑1 (MQ=60)
AACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGG < SRR4302543.5730891/94‑1 (MQ=60)
ACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGG < SRR4302543.4679091/94‑1 (MQ=60)
ACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGG < SRR4302543.2929034/94‑1 (MQ=60)
ACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGG < SRR4302543.2638559/94‑1 (MQ=60)
ACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGG < SRR4302543.3614810/94‑1 (MQ=60)
ACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAAGG > SRR4302543.3177416/1‑94 (MQ=60)
CTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCC > SRR4302543.7541329/1‑94 (MQ=60)
CTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCC > SRR4302543.7541330/1‑94 (MQ=60)
CTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCC < SRR4302543.5554485/94‑1 (MQ=60)
CTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCC > SRR4302543.7311368/1‑94 (MQ=60)
TGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCA < SRR4302543.390302/94‑1 (MQ=60)
TGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCA < SRR4302543.4490833/94‑1 (MQ=60)
GGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAG < SRR4302543.5620002/94‑1 (MQ=60)
GGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAG < SRR4302543.5395189/94‑1 (MQ=60)
GCGGGTGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGCGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGC < SRR4302543.6538679/94‑1 (MQ=60)
GCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGC < SRR4302543.7235017/94‑1 (MQ=60)
CGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCcgcc > SRR4302543.6032433/1‑90 (MQ=60)
CGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCG > SRR4302543.2768613/1‑94 (MQ=60)
GGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGC > SRR4302543.3721742/1‑94 (MQ=60)
GGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGC > SRR4302543.4766321/1‑94 (MQ=60)
GGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGC < SRR4302543.3074619/94‑1 (MQ=60)
GGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGC > SRR4302543.5566632/1‑94 (MQ=60)
GGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGGCAACACCCATACGCTCAAGGGCCGGCGCA > SRR4302543.1751054/1‑94 (MQ=60)
CGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAT > SRR4302543.327689/1‑94 (MQ=60)
CGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAT > SRR4302543.3853241/1‑94 (MQ=60)
CGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAT > SRR4302543.2188686/1‑94 (MQ=60)
CGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAT < SRR4302543.4031344/94‑1 (MQ=60)
CGATGGTTGGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAT < SRR4302543.5623878/94‑1 (MQ=60)
ATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTT > SRR4302543.1924359/1‑94 (MQ=60)
GGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGC > SRR4302543.7326851/1‑94 (MQ=60)
GGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGC > SRR4302543.3901905/1‑94 (MQ=60)
TTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGT > SRR4302543.246294/1‑94 (MQ=60)
TTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGT > SRR4302543.7251077/1‑94 (MQ=60)
TGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGGCAGCGCcatatggcgtt > SRR4302543.7519237/1‑83 (MQ=60)
TGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTT < SRR4302543.7100542/94‑1 (MQ=60)
GCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTT > SRR4302543.234953/1‑94 (MQ=60)
GCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTT < SRR4302543.7509129/94‑1 (MQ=60)
GCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTT < SRR4302543.1451714/94‑1 (MQ=60)
GCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTT > SRR4302543.1705120/1‑94 (MQ=60)
GCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTT < SRR4302543.880998/94‑1 (MQ=60)
CACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTT < SRR4302543.2364512/94‑1 (MQ=60)
CACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTT < SRR4302543.5492687/94‑1 (MQ=60)
CACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTT < SRR4302543.3652358/94‑1 (MQ=60)
ACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTT > SRR4302543.7562999/1‑94 (MQ=60)
ACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTT > SRR4302543.3059551/1‑94 (MQ=60)
ACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTT > SRR4302543.3477119/1‑94 (MQ=60)
CCGATTCAAAATCGCCCGGCGAAGAGGCGGGGACACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTC < SRR4302543.803076/94‑1 (MQ=60)
CGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCT > SRR4302543.4637765/1‑94 (MQ=60)
GATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTT > SRR4302543.1681100/1‑94 (MQ=60)
GATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTT > SRR4302543.5299803/1‑94 (MQ=60)
GATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTT > SRR4302543.4685187/1‑94 (MQ=60)
GATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGCCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTT > SRR4302543.7863879/1‑94 (MQ=60)
ATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTT < SRR4302543.4221082/94‑1 (MQ=60)
TTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGACAGCGCAATTTGCAGTTTTTCTTTC < SRR4302543.32521/94‑1 (MQ=60)
TTAAAATCGCGCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCA < SRR4302543.1227088/94‑1 (MQ=60)
TCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCA < SRR4302543.5495133/94‑1 (MQ=60)
AAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACAC < SRR4302543.4559243/94‑1 (MQ=60)
AAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACAC < SRR4302543.3113272/94‑1 (MQ=60)
AAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACAC > SRR4302543.4953555/1‑94 (MQ=60)
AATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACT < SRR4302543.5424030/94‑1 (MQ=60)
AAGCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACT < SRR4302543.5424031/94‑1 (MQ=60)
ATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTC < SRR4302543.2229908/94‑1 (MQ=60)
TCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCA < SRR4302543.6395999/94‑1 (MQ=60)
TCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCA < SRR4302543.2655530/94‑1 (MQ=60)
CCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGCCCAGCGCAATTTGCAGTTTTTCTTTCACACTCA < SRR4302543.10187/94‑1 (MQ=60)
CGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAA > SRR4302543.3844812/1‑94 (MQ=60)
CGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAA < SRR4302543.2847805/94‑1 (MQ=60)
CGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAA > SRR4302543.1233339/1‑94 (MQ=60)
GCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAG < SRR4302543.3331966/94‑1 (MQ=60)
CCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGC < SRR4302543.4938540/94‑1 (MQ=60)
CCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGC > SRR4302543.2635581/1‑94 (MQ=60)
CCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGC > SRR4302543.2635582/1‑94 (MQ=60)
CCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCT < SRR4302543.7695582/94‑1 (MQ=60)
CCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCT < SRR4302543.1301113/94‑1 (MQ=60)
CCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCT < SRR4302543.2726925/94‑1 (MQ=60)
CCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCT < SRR4302543.2726922/94‑1 (MQ=60)
CGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTT < SRR4302543.3948242/94‑1 (MQ=60)
CGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTT > SRR4302543.3928172/1‑94 (MQ=60)
GGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTG < SRR4302543.325124/94‑1 (MQ=60)
GGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTG > SRR4302543.2625826/1‑94 (MQ=60)
GCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGC < SRR4302543.2733097/94‑1 (MQ=60)
CGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGGCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGGC > SRR4302543.351430/1‑94 (MQ=60)
GAAGAGGCGGGGAAACCGCCTTCCATCACGTCAACACCCATACCCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCT > SRR4302543.2208663/1‑94 (MQ=60)
GAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCT < SRR4302543.2450106/94‑1 (MQ=60)
AAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTG > SRR4302543.1569042/1‑94 (MQ=60)
AAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTG > SRR4302543.6161432/1‑94 (MQ=60)
AGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGT < SRR4302543.1012534/94‑1 (MQ=60)
AGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGT > SRR4302543.425316/1‑94 (MQ=60)
GGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAAC < SRR4302543.5885772/94‑1 (MQ=60)
GCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCTAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAACG < SRR4302543.1453750/94‑1 (MQ=60)
GCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAACG < SRR4302543.5590781/94‑1 (MQ=60)
GCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAACG < SRR4302543.2382947/94‑1 (MQ=60)
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TCTTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAACG > NC_000913/83291‑83477
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
