Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
83,384 |
A→G |
V49A (GTC→GCC) |
leuA ← |
2‑isopropylmalate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 83,384 | 0 | A | G | 99.4%
| 485.6
/ ‑4.6
| 157 | V49A (GTC→GCC) | leuA | 2‑isopropylmalate synthase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (65/91); total (65/92) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.60e-01 |
Only 100 of 166 total aligned reads displayed.
TTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGT > NC_000913/83295‑83473
|
tttCCACGCAGCGAGCTGACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCgg < 2:1265319/93‑1 (MQ=255)
tttCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCgg < 2:2848377/93‑1 (MQ=255)
tttCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCgg < 2:811133/93‑1 (MQ=255)
ttCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCggg < 2:2874744/93‑1 (MQ=255)
tCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCgggg < 2:2534122/93‑1 (MQ=255)
aCGCAGCGAGCTAACGCCCATACGCGTCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGaaa < 1:1150938/93‑1 (MQ=255)
gCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAcc > 1:4242045/1‑93 (MQ=255)
gAGCTACCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACtt < 2:1671250/93‑1 (MQ=255)
aGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTc < 1:3721829/93‑1 (MQ=255)
aGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAACGACTTc > 2:1722628/1‑93 (MQ=255)
cTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCa < 1:353654/93‑1 (MQ=255)
tAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGCAGAGGCGGGGAAACCGACTTCCac > 2:3536270/1‑92 (MQ=255)
tAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCAt > 1:204894/1‑93 (MQ=255)
aaCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATc < 2:773109/93‑1 (MQ=255)
aaCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATc > 1:3092234/1‑93 (MQ=255)
aaCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATc > 1:2525481/1‑93 (MQ=255)
aCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCa < 1:1359835/93‑1 (MQ=255)
aCGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCa > 1:713772/1‑93 (MQ=255)
gCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACg < 1:2993347/93‑1 (MQ=255)
acaTACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTc > 2:3149097/1‑93 (MQ=255)
acaTACGCGGCTGTTTTTAACCTGGCGGGCGATGGGTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGAGAAACCGACTTtcatcaagcc > 1:6985/1‑89 (MQ=255)
aTACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCaa < 2:2624679/93‑1 (MQ=255)
aTACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCaa > 1:2896738/1‑93 (MQ=255)
tACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAac < 2:1439154/93‑1 (MQ=255)
tACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAac < 2:2762094/93‑1 (MQ=255)
tACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAac > 1:2001431/1‑93 (MQ=255)
cgcgGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCGACTTCCATCACGTCAacac > 1:4019250/1‑93 (MQ=255)
cgcgGCTGTTTTTAACCTGGCGGGCGATGGTTCGCACCGATTCAAAATCGTCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAacac < 1:3296387/93‑1 (MQ=255)
ggCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCa < 1:1128919/93‑1 (MQ=255)
ggCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCa < 2:2347098/93‑1 (MQ=255)
gCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGGCTTCCATCACGTCAACAcccct > 2:3486050/1‑91 (MQ=255)
cTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATa < 1:3499847/93‑1 (MQ=255)
cTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATa < 1:3324621/93‑1 (MQ=255)
cTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATa < 2:3429742/93‑1 (MQ=255)
cTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATa < 1:4653440/93‑1 (MQ=255)
tGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCTACACCCATAc < 2:2868560/93‑1 (MQ=255)
tGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAc < 2:827258/93‑1 (MQ=255)
tGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAc < 2:3133211/93‑1 (MQ=255)
tGTTTTTAACCGGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAc < 2:4395505/93‑1 (MQ=255)
gTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACg > 1:1500045/1‑93 (MQ=255)
gTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACg > 1:198845/1‑93 (MQ=255)
ttttAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCt < 1:4023843/93‑1 (MQ=255)
ttttAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCt < 2:1558814/93‑1 (MQ=255)
tttAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACCTCAACACCCCAACGCTc > 2:3814495/1‑93 (MQ=255)
tttAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAACGACTTCCATCACGTCAACACCCATACGCTc > 2:455623/1‑93 (MQ=255)
tAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCaa < 2:469256/93‑1 (MQ=255)
tAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCaa < 2:2470513/93‑1 (MQ=255)
aaCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCCACACCCATACGCTCAAg > 1:650519/1‑93 (MQ=255)
aaCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAg < 2:1453871/93‑1 (MQ=255)
aaCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAg < 1:10087/93‑1 (MQ=255)
aCCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAgg < 1:4171026/93‑1 (MQ=255)
cTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGc > 1:2296105/1‑93 (MQ=255)
tGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGcc < 1:837933/93‑1 (MQ=255)
tGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGcc < 2:1627865/93‑1 (MQ=255)
tGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGcc > 1:3978260/1‑93 (MQ=255)
tGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGGCAACACCCATACGATCAAGTGcc > 2:1937164/1‑93 (MQ=255)
ggcgggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCa < 1:1539764/93‑1 (MQ=255)
gcgggcgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAg < 2:791101/93‑1 (MQ=255)
cgggcgATGGTTTGCACCGATTCAAAAGCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAgc < 2:1525914/93‑1 (MQ=255)
ggATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCaa < 2:1759857/92‑1 (MQ=255)
cgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCaa > 1:894716/1‑93 (MQ=255)
cgATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCaa < 1:2322352/93‑1 (MQ=255)
gATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAt > 2:1309647/1‑93 (MQ=255)
aTGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAtt > 2:663260/1‑93 (MQ=255)
aTGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAtt < 1:1589832/93‑1 (MQ=255)
aTGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAtt < 2:898274/93‑1 (MQ=255)
aTGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAtt < 2:3345057/93‑1 (MQ=255)
tttGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCa < 2:3720648/93‑1 (MQ=255)
tGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGt > 1:4309825/1‑93 (MQ=255)
tGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGt < 2:4243923/93‑1 (MQ=255)
aCCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGtttt > 1:3101493/1‑93 (MQ=255)
aCCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGtttt < 2:2726245/93‑1 (MQ=255)
aCCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGtttt < 1:1664612/93‑1 (MQ=255)
aCCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGtttt < 2:415433/93‑1 (MQ=255)
aCCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAAGCTCAAGGGCCAGCCCAATTTGGAGtttt > 1:2146582/1‑93 (MQ=255)
ccGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGttttt > 2:2571842/1‑93 (MQ=255)
ccGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGttttt > 2:1598266/1‑93 (MQ=255)
gATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTtttct < 1:3006728/93‑1 (MQ=255)
gATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGGTtttct > 1:1009759/1‑93 (MQ=255)
gATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCCCAAGGGCCAGCGCAATTTGCAGTTtttct > 1:3074033/1‑93 (MQ=255)
aTTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTtttctt < 1:4152407/93‑1 (MQ=255)
tCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTtttctttc < 1:4549507/93‑1 (MQ=255)
cAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTca < 1:4545678/93‑1 (MQ=255)
aaTCGCCCGGCGGAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCacac < 2:884633/93‑1 (MQ=255)
aaTCGCCCGGCGAAGAGGCGGGGGAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCacac > 2:939418/1‑93 (MQ=255)
aaTCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCacac < 2:4659161/93‑1 (MQ=255)
aTCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACt > 2:1848236/1‑93 (MQ=255)
cGCCCTGAGAACAGGCGGTGAAACCGAATTCCATCCCGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCa < 1:1299427/93‑1 (MQ=255)
cGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCa < 2:2345361/93‑1 (MQ=255)
gCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCaa < 2:2257476/93‑1 (MQ=255)
cccGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAg < 2:4252786/93‑1 (MQ=255)
cccGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAg < 1:634808/93‑1 (MQ=255)
cccGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAg < 1:2563122/93‑1 (MQ=255)
cccGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAg < 1:1401340/93‑1 (MQ=255)
ccGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGc > 1:727518/1‑93 (MQ=255)
gAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCTGTTTTTCTTTCACACTCCAGCTTGcc > 2:816449/1‑93 (MQ=255)
gAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGcc > 2:2689230/1‑93 (MQ=255)
gAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGcc < 2:121594/93‑1 (MQ=255)
gaggCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGt > 1:3130365/1‑93 (MQ=255)
gaggCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGGTTTTCTTTCACACTCAAGCTTGGCTGt > 1:76789/1‑93 (MQ=255)
|
TTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGT > NC_000913/83295‑83473
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAACG > NC_000913/83293‑83477
|
TTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCG < SRR4302535.2075035/94‑1 (MQ=60)
TTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCG < SRR4302535.3899336/94‑1 (MQ=60)
CCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAA < SRR4302535.1254544/94‑1 (MQ=60)
ACGCAGCGAGCTAACGCCCATACGCGTCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAC < SRR4302535.1159158/94‑1 (MQ=60)
ACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAC < SRR4302535.702243/94‑1 (MQ=60)
CTCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACC < SRR4302535.1284390/94‑1 (MQ=60)
CGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACC > SRR4302535.2125253/1‑94 (MQ=60)
CGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACC > SRR4302535.4271080/1‑94 (MQ=60)
CGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACC < SRR4302535.4117308/94‑1 (MQ=60)
CGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACC < SRR4302535.1605968/94‑1 (MQ=60)
GCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCG > SRR4302535.927195/1‑94 (MQ=60)
GAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCGACTTC > SRR4302535.2902529/1‑94 (MQ=60)
AGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCC < SRR4302535.3747614/94‑1 (MQ=60)
GCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCA > SRR4302535.1488367/1‑94 (MQ=60)
CTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCAT < SRR4302535.356096/94‑1 (MQ=60)
CTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCAT < SRR4302535.4336413/94‑1 (MQ=60)
CTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCAT > SRR4302535.206301/1‑94 (MQ=60)
TAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATC > SRR4302535.2543679/1‑94 (MQ=60)
TAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATC > SRR4302535.3113769/1‑94 (MQ=60)
AACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCA > SRR4302535.718787/1‑94 (MQ=60)
ACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCAC < SRR4302535.1369559/94‑1 (MQ=60)
GCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGT < SRR4302535.3014336/94‑1 (MQ=60)
CACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAAACGACTTCCATCACGTC > SRR4302535.4188009/1‑94 (MQ=60)
CACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGGTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGAGAAACCGACTTTCATCAagcc > SRR4302535.7042/1‑90 (MQ=60)
CATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAA > SRR4302535.2917223/1‑94 (MQ=60)
ATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAAC > SRR4302535.2015852/1‑94 (MQ=60)
ACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCGACTTCCATCACGTCAACAC > SRR4302535.4046751/1‑94 (MQ=60)
CGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACC < SRR4302535.4626178/94‑1 (MQ=60)
CGCGGCTGTTTTTAACCTGGCGGGCGATGGTTCGCACCGATTCAAAATCGTCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACC < SRR4302535.3319305/94‑1 (MQ=60)
GGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCAT < SRR4302535.1136980/94‑1 (MQ=60)
CTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAC < SRR4302535.3524178/94‑1 (MQ=60)
CTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAC < SRR4302535.3347755/94‑1 (MQ=60)
CTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAC < SRR4302535.4684945/94‑1 (MQ=60)
TGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACG > SRR4302535.200209/1‑94 (MQ=60)
TGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACG > SRR4302535.1510838/1‑94 (MQ=60)
TGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACG < SRR4302535.450166/94‑1 (MQ=60)
TTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTC < SRR4302535.4051374/94‑1 (MQ=60)
TAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCCACACCCATACGCTCAAG > SRR4302535.655058/1‑94 (MQ=60)
TAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAG < SRR4302535.1335536/94‑1 (MQ=60)
AACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGG < SRR4302535.10166/94‑1 (MQ=60)
ACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGG < SRR4302535.3079965/94‑1 (MQ=60)
ACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGG < SRR4302535.4199584/94‑1 (MQ=60)
ACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGG < SRR4302535.704131/94‑1 (MQ=60)
CCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGC > SRR4302535.2312535/1‑94 (MQ=60)
CTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCC > SRR4302535.4005444/1‑94 (MQ=60)
CTGGCGGGCGATGGTTGGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCC < SRR4302535.3534186/94‑1 (MQ=60)
TGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCA < SRR4302535.843816/94‑1 (MQ=60)
GGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAG < SRR4302535.1550865/94‑1 (MQ=60)
CGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCG > SRR4302535.3856593/1‑94 (MQ=60)
CGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGCCAACACCCATACGCTCAAGGGCCAGCG > SRR4302535.3107694/1‑94 (MQ=60)
GCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAA > SRR4302535.901061/1‑94 (MQ=60)
CGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGGAACCGACTTCCATCACCTCCACAACCATACGCTCCAATGCCAGCGCAAT > SRR4302535.4046219/1‑94 (MQ=60)
CGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAT < SRR4302535.2338969/94‑1 (MQ=60)
CGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAT > SRR4302535.1089420/1‑94 (MQ=60)
CGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAAT < SRR4302535.1519094/94‑1 (MQ=60)
GATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATT > SRR4302535.74534/1‑94 (MQ=60)
ATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTT < SRR4302535.1601307/94‑1 (MQ=60)
TGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATTACGTCAACACCCATACGCTCAAGGGCCAGCGCAAGTTG > SRR4302535.3431505/1‑94 (MQ=60)
GGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGC < SRR4302535.1856437/94‑1 (MQ=60)
GTTGCGCCGATTCAAAATCGCCCGTCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACGCCCATACGCTCAAGGGCCAGCGCAATTTGCAG < SRR4302535.2315184/94‑1 (MQ=60)
TTGCACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGT > SRR4302535.4339308/1‑94 (MQ=60)
CACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTT > SRR4302535.3123083/1‑94 (MQ=60)
CACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATAAGCTCAAGGGCCAGCCCAATTTGGAGTTTT > SRR4302535.2162023/1‑94 (MQ=60)
ACCGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTT < SRR4302535.1676642/94‑1 (MQ=60)
CGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCT < SRR4302535.2020045/94‑1 (MQ=60)
CGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGGTTTTCT > SRR4302535.1016932/1‑94 (MQ=60)
CGATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCCCAAGGGCCAGCGCAATTTGCAGTTTTTCT > SRR4302535.3095488/1‑94 (MQ=60)
GATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTT < SRR4302535.3027791/94‑1 (MQ=60)
ATTCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTT < SRR4302535.4180839/94‑1 (MQ=60)
TCAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCA < SRR4302535.4580609/94‑1 (MQ=60)
CAAAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCAC < SRR4302535.4576762/94‑1 (MQ=60)
AAATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACAC > SRR4302535.780705/1‑94 (MQ=60)
ATCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTC > SRR4302535.471447/1‑94 (MQ=60)
TCGCCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCA > SRR4302535.3224472/1‑94 (MQ=60)
CCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGC < SRR4302535.1411341/94‑1 (MQ=60)
CCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGC < SRR4302535.639230/94‑1 (MQ=60)
CCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGC > SRR4302535.732628/1‑94 (MQ=60)
CCCGGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGC < SRR4302535.2581568/94‑1 (MQ=60)
GGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTG < SRR4302535.2446263/94‑1 (MQ=60)
GGCGAAGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTG < SRR4302535.2968515/94‑1 (MQ=60)
AGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTTTTTCACACTCAAGCTTGCCTGT > SRR4302535.3126658/1‑94 (MQ=60)
AGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGT > SRR4302535.3152168/1‑94 (MQ=60)
AGAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGGTTTTCTTTCACACTCAAGCTTGGCTGT > SRR4302535.77343/1‑94 (MQ=60)
GAGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTA > SRR4302535.3467693/1‑94 (MQ=60)
AGGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTTCCTGTAA < SRR4302535.2161635/94‑1 (MQ=60)
GGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAAC < SRR4302535.1189698/94‑1 (MQ=60)
GGCGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAAC < SRR4302535.353169/94‑1 (MQ=60)
GCGGGTAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACGCTCAAGCTTGCCTGTAACG < SRR4302535.3440039/94‑1 (MQ=60)
|
TTTTTCCACGCAGCGAGCTAACGCACATACGCGGCTGTTTTTAACCTGGCGGGCGATGGTTTGCACCGATTCAAAATCGCCCGGCGAAGAGACGGGGAAACCGACTTCCATCACGTCAACACCCATACGCTCAAGGGCCAGCGCAATTTGCAGTTTTTCTTTCACACTCAAGCTTGCCTGTAACG > NC_000913/83293‑83477
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
