Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,855,431 |
A→G |
D121D (GAT→GAC) |
b1773 ← |
putative aldolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,855,431 | 0 | A | G | 100.0%
| 408.5
/ NA
| 129 | D121D (GAT→GAC) | b1773 | putative aldolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (56/73); total (56/73) |
Only 100 of 135 total aligned reads displayed.
GTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAGG > NC_000913/1855341‑1855519
|
gTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTc < 1:2585242/93‑1 (MQ=255)
tGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCg > 2:3484928/1‑93 (MQ=255)
aTAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGAc < 1:2245374/93‑1 (MQ=255)
tAGCCCGCCATCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATGCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACa < 2:1361345/93‑1 (MQ=255)
tAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACa > 1:3574942/1‑93 (MQ=255)
aGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAg > 1:1691712/1‑93 (MQ=255)
gCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGc > 2:3392958/1‑93 (MQ=255)
cGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCctc < 2:314888/93‑1 (MQ=255)
gCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCctct < 1:4119125/93‑1 (MQ=255)
cccAGCTCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCctct < 2:2903230/92‑1 (MQ=255)
ccAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCtt > 2:2397766/1‑93 (MQ=255)
ccAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCtt < 1:2427064/93‑1 (MQ=255)
cAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCttt < 2:4440102/93‑1 (MQ=255)
cAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCttt < 2:182516/93‑1 (MQ=255)
aGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTg < 2:188107/93‑1 (MQ=255)
aGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTg < 2:4402054/93‑1 (MQ=255)
aGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTg < 2:966189/93‑1 (MQ=255)
gcgcTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTgg < 1:1605056/93‑1 (MQ=255)
gcgcTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTgg < 1:1870264/93‑1 (MQ=255)
gcgcTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGGCGACAGCCTCTTTgg > 2:1799588/1‑93 (MQ=255)
gcTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGtt < 2:3025960/93‑1 (MQ=255)
gcTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGtt > 2:2485002/1‑93 (MQ=255)
cTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTa > 2:4146046/1‑93 (MQ=255)
cTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTa > 2:3856415/1‑93 (MQ=255)
ttCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTaa > 2:3211532/1‑93 (MQ=255)
tCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTaaa < 1:280325/93‑1 (MQ=255)
ccTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAAc < 2:839002/93‑1 (MQ=255)
ccTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAAc < 2:1132174/93‑1 (MQ=255)
cTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACg > 1:1429791/1‑93 (MQ=255)
tCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGa < 1:331771/93‑1 (MQ=255)
cATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGaa < 2:1541092/93‑1 (MQ=255)
tAAACGGTTTCATTACCGACATGCCCTACTTCCGCCTCTACCGGAATAACCAGCGGATGGCAGAAGTCGACAGCCTCTTTGGTTATACGAata > 2:4532371/1‑93 (MQ=255)
tAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAata < 2:2795465/93‑1 (MQ=255)
tAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAata < 2:752689/93‑1 (MQ=255)
aCGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATAttt > 1:1094414/1‑93 (MQ=255)
aCGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATAttt < 1:404573/93‑1 (MQ=255)
cGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATAtttt < 2:3839248/93‑1 (MQ=255)
ggTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTttc > 1:4358826/1‑93 (MQ=255)
gTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTttct > 2:1004415/1‑93 (MQ=255)
gTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTttct < 2:2733304/93‑1 (MQ=255)
tttCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTttctt > 2:2803144/1‑93 (MQ=255)
tttCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTttctt > 1:2276309/1‑93 (MQ=255)
tttCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTttctt < 2:1525793/93‑1 (MQ=255)
tttCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTttctt > 2:2409555/1‑93 (MQ=255)
ttCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGTTGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTttcttc < 1:2863925/93‑1 (MQ=255)
tCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCg > 2:467100/1‑93 (MQ=255)
aTTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGaa > 2:3515658/1‑93 (MQ=255)
ttACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGaaa > 2:2135394/1‑93 (MQ=255)
ttACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGaaa < 1:4241029/93‑1 (MQ=255)
ttACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGaaa < 1:4237255/93‑1 (MQ=255)
ttACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGaaa > 1:1341805/1‑93 (MQ=255)
ccGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGTAAtta > 2:2375914/1‑91 (MQ=255)
gACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCaaa > 1:537787/1‑93 (MQ=255)
aCATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAAc < 1:3902258/93‑1 (MQ=255)
aCATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACAAATATTTTCTTCGAAATCAAAc < 2:3885344/93‑1 (MQ=255)
cATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAAcg > 1:4079998/1‑93 (MQ=255)
tGCCCTAATTCCGCCTCTACCGGAATGCCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAAcgcg < 2:4629741/93‑1 (MQ=255)
gCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCgg < 1:4588402/93‑1 (MQ=255)
cccTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGa < 2:2021571/93‑1 (MQ=255)
cccGAATTCCGCCTCTACCGGAATCCCCAGCGGATGCAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGa < 1:3226138/93‑1 (MQ=255)
ccTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGGCAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGaa < 1:627857/93‑1 (MQ=255)
ccTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGaa > 2:1394730/1‑93 (MQ=255)
cTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAg < 2:1874133/93‑1 (MQ=255)
cTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAg > 1:2844372/1‑93 (MQ=255)
cTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAg < 1:74063/93‑1 (MQ=255)
aaTTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCa > 1:114278/1‑93 (MQ=255)
aTTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCAt > 2:3026555/1‑93 (MQ=255)
ttCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGACTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATc > 1:3182625/1‑93 (MQ=255)
ccGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCAc < 2:3484650/93‑1 (MQ=255)
gCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGc > 2:296178/1‑93 (MQ=255)
ccTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCa > 2:4100159/1‑93 (MQ=255)
ctctACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCAt < 1:2882510/93‑1 (MQ=255)
ctctACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCAt > 2:837217/1‑93 (MQ=255)
tctACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCAtt > 2:2784776/1‑93 (MQ=255)
tctACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCAtt > 1:1404132/1‑93 (MQ=255)
tACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTaa > 2:93165/1‑93 (MQ=255)
tACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTaa > 1:519293/1‑93 (MQ=255)
tACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTaa > 1:3094460/1‑93 (MQ=255)
aCCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAAt > 2:1572097/1‑93 (MQ=255)
aCCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAAt < 2:4601924/93‑1 (MQ=255)
aaTACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAAtt < 1:4531827/93‑1 (MQ=255)
aaTACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAAtt < 1:4226762/93‑1 (MQ=255)
aaTACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAAtt < 1:4442483/93‑1 (MQ=255)
aTACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTc < 1:283714/93‑1 (MQ=255)
ccAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATAc > 1:3978796/1‑93 (MQ=255)
aGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCa < 2:2182287/93‑1 (MQ=255)
gCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCGAACGCGGAAGCATCACGCATTAATGAATTCATACCAt < 1:4635711/93‑1 (MQ=255)
gCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCAt > 1:1972407/1‑93 (MQ=255)
gCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCAt < 2:1105827/93‑1 (MQ=255)
cGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATg < 2:4191543/93‑1 (MQ=255)
gATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAg > 1:849261/1‑93 (MQ=255)
gATGGAAGAAGTCGACAGCCTCGTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAg < 2:1832564/93‑1 (MQ=255)
aTGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGt < 1:256626/93‑1 (MQ=255)
tGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTc < 1:1742452/93‑1 (MQ=255)
ggAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTcc < 2:10240/93‑1 (MQ=255)
aagaagTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAg < 1:3445582/93‑1 (MQ=255)
aagaagTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAg > 2:3351677/1‑93 (MQ=255)
aagaagTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAg > 2:3182912/1‑93 (MQ=255)
aagaagTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAg < 2:1429791/93‑1 (MQ=255)
agaaGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAgg > 1:397686/1‑93 (MQ=255)
|
GTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAGG > NC_000913/1855341‑1855519
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAGG > NC_000913/1855338‑1855519
|
ATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAG > SRR4302535.166729/1‑94 (MQ=60)
AGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTC > SRR4302535.4589039/1‑94 (MQ=60)
GTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCG < SRR4302535.2603807/94‑1 (MQ=60)
ATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACA > SRR4302535.3599728/1‑94 (MQ=60)
ATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACA < SRR4302535.2261340/94‑1 (MQ=60)
ATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACA < SRR4302535.2437985/94‑1 (MQ=60)
TAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAG > SRR4302535.1703950/1‑94 (MQ=60)
GCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTT < SRR4302535.4147315/94‑1 (MQ=60)
CCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTT < SRR4302535.2444553/94‑1 (MQ=60)
AGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGG < SRR4302535.3044535/94‑1 (MQ=60)
GCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGT < SRR4302535.2729147/94‑1 (MQ=60)
GCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGT < SRR4302535.1616631/94‑1 (MQ=60)
GCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGT < SRR4302535.1883745/94‑1 (MQ=60)
GCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGT > SRR4302535.4319591/1‑94 (MQ=60)
TTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAA < SRR4302535.4213968/94‑1 (MQ=60)
TCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAAC < SRR4302535.282279/94‑1 (MQ=60)
TCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAAC < SRR4302535.2879941/94‑1 (MQ=60)
CCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACG > SRR4302535.1439990/1‑94 (MQ=60)
TCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAA < SRR4302535.334069/94‑1 (MQ=60)
CATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAAT < SRR4302535.723060/94‑1 (MQ=60)
CATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAAT < SRR4302535.3647447/94‑1 (MQ=60)
AACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTT > SRR4302535.1102204/1‑94 (MQ=60)
AACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGGCGACAGCCTCTTTGGTTAAACGAATATTT < SRR4302535.4069953/94‑1 (MQ=60)
ACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTT < SRR4302535.407406/94‑1 (MQ=60)
CGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTC > SRR4302535.4388665/1‑94 (MQ=60)
GTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTT > SRR4302535.2292562/1‑94 (MQ=60)
TTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGTTGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCG < SRR4302535.2884217/94‑1 (MQ=60)
TCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGA < SRR4302535.1687785/94‑1 (MQ=60)
ATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAA > SRR4302535.1351380/1‑94 (MQ=60)
TTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAAT < SRR4302535.4270058/94‑1 (MQ=60)
TTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAAT < SRR4302535.4266251/94‑1 (MQ=60)
CGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAA > SRR4302535.541543/1‑94 (MQ=60)
ACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACG > SRR4302535.4107906/1‑94 (MQ=60)
ACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACG < SRR4302535.3928992/94‑1 (MQ=60)
GCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGA < SRR4302535.4619642/94‑1 (MQ=60)
CCCGAATTCCGCCTCTACCGGAATCCCCAGCGGATGCAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAA < SRR4302535.3248503/94‑1 (MQ=60)
CCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGGCAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAG < SRR4302535.632231/94‑1 (MQ=60)
CCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAG > SRR4302535.2864538/1‑94 (MQ=60)
CTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGC < SRR4302535.74601/94‑1 (MQ=60)
TAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCA > SRR4302535.115080/1‑94 (MQ=60)
ATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGACTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATC > SRR4302535.3204617/1‑94 (MQ=60)
CTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATT < SRR4302535.2902911/94‑1 (MQ=60)
CTCTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATT > SRR4302535.1414148/1‑94 (MQ=60)
CTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAA > SRR4302535.522927/1‑94 (MQ=60)
CTACCGGAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAA > SRR4302535.3116008/1‑94 (MQ=60)
GAATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATT < SRR4302535.475393/94‑1 (MQ=60)
AATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTC > SRR4302535.1388482/1‑94 (MQ=60)
AATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTC < SRR4302535.4255687/94‑1 (MQ=60)
AATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTC < SRR4302535.4472948/94‑1 (MQ=60)
AATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTC < SRR4302535.4562846/94‑1 (MQ=60)
ATACCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCA < SRR4302535.285692/94‑1 (MQ=60)
CCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATAC < SRR4302535.1953570/94‑1 (MQ=60)
CCCAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATAC > SRR4302535.4005985/1‑94 (MQ=60)
CAGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCA > SRR4302535.3283447/1‑94 (MQ=60)
AGCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCAT > SRR4302535.1986613/1‑94 (MQ=60)
GCGGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCGAACGCGGAAGCATCACGCATTAATGAATTCATACCATG < SRR4302535.4667151/94‑1 (MQ=60)
GGATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAG > SRR4302535.855236/1‑94 (MQ=60)
ATGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTC < SRR4302535.258394/94‑1 (MQ=60)
TGGAAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCC < SRR4302535.1755050/94‑1 (MQ=60)
AAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAGG < SRR4302535.3469539/94‑1 (MQ=60)
AAGAAGTCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAGG > SRR4302535.400473/1‑94 (MQ=60)
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ATAGTGATAGCCCGCCAGCGCTTCCTCATAAACGGTTTCATTACCGACATGCCCTAATTCCGCCTCTACCGGAATACCCAGCGGATGGAAGAAATCGACAGCCTCTTTGGTTAAACGAATATTTTCTTCGAAATCAAACGCGGAAGCATCACGCATTAATGAATTCATACCATGAGTCCAGG > NC_000913/1855338‑1855519
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
