Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,863,065 |
G→A |
A199V (GCC→GTC) |
b1781 ← |
putative aldehyde reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,863,065 | 0 | G | A | 99.2%
| 415.8
/ ‑5.5
| 121 | A199V (GCC→GTC) | b1781 | putative aldehyde reductase |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (55/64); total (57/64) |
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.17e-01 |
Only 100 of 129 total aligned reads displayed.
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA > NC_000913/1862975‑1863154
|
gCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGAcc < 1:3634959/93‑1 (MQ=255)
ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt > 1:3871157/1‑93 (MQ=255)
caacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTg > 1:602350/1‑93 (MQ=255)
acaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTggg > 1:4171495/1‑93 (MQ=255)
acaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTggg > 1:1093339/1‑93 (MQ=255)
acaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTggg > 1:2732965/1‑93 (MQ=255)
caaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGc < 2:946280/93‑1 (MQ=255)
caaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGc < 1:3123741/93‑1 (MQ=255)
caaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGc < 1:2857776/93‑1 (MQ=255)
caaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGc < 2:1362615/93‑1 (MQ=255)
aaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCt > 2:4399561/1‑93 (MQ=255)
aTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTa > 2:3508934/1‑93 (MQ=255)
tACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTaa < 2:3710776/93‑1 (MQ=255)
aCTTGTGCCGCGCTTATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc < 2:912934/93‑1 (MQ=255)
aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc < 1:2322225/93‑1 (MQ=255)
ttGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACgg > 2:742536/1‑93 (MQ=255)
tgtgCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGa > 1:3235632/1‑93 (MQ=255)
gCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTg > 2:4119276/1‑93 (MQ=255)
ccGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGt > 2:3643949/1‑93 (MQ=255)
ccGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGt < 1:3449333/93‑1 (MQ=255)
ccGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGt > 2:4594798/1‑93 (MQ=255)
cgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAg < 2:4427260/93‑1 (MQ=255)
cTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGcc < 2:4185893/93‑1 (MQ=255)
tGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCa > 1:53272/1‑93 (MQ=255)
gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt > 2:378606/1‑93 (MQ=255)
gATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAt < 1:126868/93‑1 (MQ=255)
atatTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATc > 2:1205168/1‑93 (MQ=255)
tatTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCa < 1:1427916/93‑1 (MQ=255)
tatTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCa > 1:4411342/1‑93 (MQ=255)
atTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAc > 1:71497/1‑93 (MQ=255)
atTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAc > 1:510317/1‑93 (MQ=255)
atTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAc < 1:1841395/93‑1 (MQ=255)
atTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAc < 2:150229/93‑1 (MQ=255)
atTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAc < 1:1016322/93‑1 (MQ=255)
ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc > 2:3330646/1‑93 (MQ=255)
ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc > 1:1054583/1‑93 (MQ=255)
tgtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCg < 2:1098302/93‑1 (MQ=255)
gtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCgg < 1:1472975/93‑1 (MQ=255)
aGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCAt < 1:2043194/93‑1 (MQ=255)
aTGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctg > 2:3703363/1‑93 (MQ=255)
tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc < 2:3932248/93‑1 (MQ=255)
tgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgctg > 2:3976940/1‑93 (MQ=255)
gCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGt < 2:3356191/93‑1 (MQ=255)
tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCt < 1:1908594/93‑1 (MQ=255)
tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCt < 2:484252/93‑1 (MQ=255)
ttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTg < 2:3219798/93‑1 (MQ=255)
ttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTg > 2:1984661/1‑93 (MQ=255)
tCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTgg < 1:2944119/93‑1 (MQ=255)
cGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGc > 2:1592263/1‑93 (MQ=255)
gTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCa > 2:470960/1‑93 (MQ=255)
gTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCa > 2:2317385/1‑93 (MQ=255)
gACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCa < 1:920079/93‑1 (MQ=255)
aCTACCGCGTTTTTTAACAGTCCATTGCGCACCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAg < 2:610729/93‑1 (MQ=255)
aCTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAg > 2:1670630/1‑93 (MQ=255)
aCTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAg < 1:3929818/93‑1 (MQ=255)
tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg < 1:3805571/93‑1 (MQ=255)
tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg < 1:3206689/93‑1 (MQ=255)
ccGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGa < 2:2156036/93‑1 (MQ=255)
cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg > 1:1739060/1‑93 (MQ=255)
cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg < 2:3669081/93‑1 (MQ=255)
cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg > 2:2180478/1‑93 (MQ=255)
cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg < 1:1140662/93‑1 (MQ=255)
gcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGt > 1:2004028/1‑93 (MQ=255)
gcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGt < 1:3074879/93‑1 (MQ=255)
gTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGCGTAg > 2:204252/1‑93 (MQ=255)
gtttttAACAGTCCATTGCGCAACCGCCCGACGTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGa < 1:1506034/92‑1 (MQ=255)
tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt < 1:3160584/93‑1 (MQ=255)
tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt < 2:71679/93‑1 (MQ=255)
tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGCGAGGAGAt > 1:1121468/1‑93 (MQ=255)
tttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGGGTAGATCg < 2:2496426/93‑1 (MQ=255)
ttAACAGTCCATTGCGCAACCGCCCGTCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCGGGCACCAGGGGAGTAGATCGt < 2:2051019/93‑1 (MQ=255)
ttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATATGCTGTTGCTGGCACCAGGGGAGTAGATCGt > 1:202179/1‑93 (MQ=255)
ttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATAACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGCTCGt > 2:2022047/1‑93 (MQ=255)
tAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTa > 1:38271/1‑93 (MQ=255)
tAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTa > 1:1134614/1‑93 (MQ=255)
tAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTa < 1:2550426/93‑1 (MQ=255)
tAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTa < 2:3158799/93‑1 (MQ=255)
aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt > 1:945130/1‑93 (MQ=255)
aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt > 2:1436309/1‑93 (MQ=255)
tCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAt < 1:678369/93‑1 (MQ=255)
cATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTc > 2:1715843/1‑93 (MQ=255)
cATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTc > 2:4306542/1‑93 (MQ=255)
aTTGCCCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc < 1:2461304/93‑1 (MQ=255)
ttGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTCCTCAATTCCt > 1:324707/1‑93 (MQ=255)
ttGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCt < 2:2161699/93‑1 (MQ=255)
tGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTc < 1:3593763/93‑1 (MQ=255)
gcgcAACCGCCGGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCg < 2:4051661/93‑1 (MQ=255)
gcgcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCg < 1:2829444/93‑1 (MQ=255)
gcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTg > 2:4033830/1‑93 (MQ=255)
cAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGa > 2:4613743/1‑93 (MQ=255)
cAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGa > 1:3956039/1‑93 (MQ=255)
aCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAc > 1:1500752/1‑93 (MQ=255)
aCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAc < 2:2313168/93‑1 (MQ=255)
ccGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAcc < 1:2794315/93‑1 (MQ=255)
gCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCga < 2:302419/93‑1 (MQ=255)
gCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCga < 1:4596262/93‑1 (MQ=255)
cccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCACTTCCTCCTGAACCgag > 2:714079/1‑93 (MQ=255)
cccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgag < 2:1805083/93‑1 (MQ=255)
ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga > 1:3114398/1‑93 (MQ=255)
ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga < 2:3154295/93‑1 (MQ=255)
|
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA > NC_000913/1862975‑1863154
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > NC_000913/1862974‑1863157
|
CGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACC < SRR4302535.2286373/94‑1 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT < SRR4302535.3660148/94‑1 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT > SRR4302535.3897759/1‑94 (MQ=60)
CCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTG > SRR4302535.606566/1‑94 (MQ=60)
AACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGG > SRR4302535.4200053/1‑94 (MQ=60)
AACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGG > SRR4302535.2752471/1‑94 (MQ=60)
AACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGG > SRR4302535.1101125/1‑94 (MQ=60)
CAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCT < SRR4302535.2878022/94‑1 (MQ=60)
CAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCT < SRR4302535.3145496/94‑1 (MQ=60)
ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG < SRR4302535.1396325/94‑1 (MQ=60)
ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG < SRR4302535.2338842/94‑1 (MQ=60)
ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG < SRR4302535.2776093/94‑1 (MQ=60)
TTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGA > SRR4302535.3258093/1‑94 (MQ=60)
CCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTA < SRR4302535.3473314/94‑1 (MQ=60)
CTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCA > SRR4302535.53663/1‑94 (MQ=60)
GATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATC < SRR4302535.127762/94‑1 (MQ=60)
ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA > SRR4302535.4441533/1‑94 (MQ=60)
TATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGCCCTGGGCTAACGGACTGTAAGCCATCAC > SRR4302535.3162299/1‑94 (MQ=60)
TATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAC > SRR4302535.72019/1‑94 (MQ=60)
TATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAC > SRR4302535.513886/1‑94 (MQ=60)
TATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAC < SRR4302535.1438107/94‑1 (MQ=60)
ATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACC < SRR4302535.1023545/94‑1 (MQ=60)
ATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACC < SRR4302535.1854675/94‑1 (MQ=60)
ATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACC > SRR4302535.1062083/1‑94 (MQ=60)
GTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGC < SRR4302535.1483520/94‑1 (MQ=60)
AGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATC < SRR4302535.2057913/94‑1 (MQ=60)
TGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCTCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCT < SRR4302535.1135832/94‑1 (MQ=60)
ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT < SRR4302535.2355575/94‑1 (MQ=60)
TTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTG < SRR4302535.1922353/94‑1 (MQ=60)
TCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGC < SRR4302535.2964815/94‑1 (MQ=60)
GACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAG < SRR4302535.926604/94‑1 (MQ=60)
ACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGG < SRR4302535.3956657/94‑1 (MQ=60)
ACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGG < SRR4302535.159147/94‑1 (MQ=60)
TACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG < SRR4302535.3831802/94‑1 (MQ=60)
TACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG < SRR4302535.3228899/94‑1 (MQ=60)
CCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAG > SRR4302535.1751627/1‑94 (MQ=60)
CCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAG > SRR4302535.304453/1‑94 (MQ=60)
CGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGT < SRR4302535.1148789/94‑1 (MQ=60)
CGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGT > SRR4302535.2018470/1‑94 (MQ=60)
GCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTA < SRR4302535.3096338/94‑1 (MQ=60)
GTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGA > SRR4302535.4574771/1‑94 (MQ=60)
TTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAT < SRR4302535.3394189/94‑1 (MQ=60)
TTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGCGAGGAGAT > SRR4302535.1129467/1‑94 (MQ=60)
GTTTTTAACAGTCCATTGCGCAACCGCCCGACGTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAT < SRR4302535.1516861/94‑1 (MQ=60)
TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC < SRR4302535.3182511/94‑1 (MQ=60)
TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC < SRR4302535.2004274/94‑1 (MQ=60)
TTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATATGCTGTTGCTGGCACCAGGGGAGTAGATCGT > SRR4302535.203560/1‑94 (MQ=60)
TTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTA < SRR4302535.566027/94‑1 (MQ=60)
TTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTA > SRR4302535.1142710/1‑94 (MQ=60)
TTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTA > SRR4302535.38567/1‑94 (MQ=60)
TAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTAC < SRR4302535.2568788/94‑1 (MQ=60)
AACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACT > SRR4302535.951823/1‑94 (MQ=60)
CAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCA < SRR4302535.3913383/94‑1 (MQ=60)
TCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATT < SRR4302535.683113/94‑1 (MQ=60)
ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTCCTCAATTCCT > SRR4302535.326954/1‑94 (MQ=60)
ATTGCCCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT < SRR4302535.2479048/94‑1 (MQ=60)
TGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCG < SRR4302535.3684054/94‑1 (MQ=60)
TGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCG < SRR4302535.3618704/94‑1 (MQ=60)
GCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGT < SRR4302535.2849528/94‑1 (MQ=60)
CGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTG > SRR4302535.939792/1‑94 (MQ=60)
GCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGA > SRR4302535.3983053/1‑94 (MQ=60)
AACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAC > SRR4302535.1511548/1‑94 (MQ=60)
CCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCG < SRR4302535.2814195/94‑1 (MQ=60)
GCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAG < SRR4302535.4627535/94‑1 (MQ=60)
CCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA > SRR4302535.3136080/1‑94 (MQ=60)
CGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATG < SRR4302535.1929441/94‑1 (MQ=60)
CGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATG < SRR4302535.2348830/94‑1 (MQ=60)
GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > SRR4302535.2456343/1‑94 (MQ=60)
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CGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > NC_000913/1862974‑1863157
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
