Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,863,065 |
G→A |
A199V (GCC→GTC) |
b1781 ← |
putative aldehyde reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,863,065 | 0 | G | A | 99.5%
| 703.2
/ ‑5.5
| 201 | A199V (GCC→GTC) | b1781 | putative aldehyde reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (113/87); total (113/88) |
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.18e-01 |
Only 100 of 210 total aligned reads displayed.
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA > NC_000913/1862975‑1863154
|
ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt > 1:1360430/1‑93 (MQ=255)
ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt < 2:3801789/93‑1 (MQ=255)
ccAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCt > 1:1958287/1‑93 (MQ=255)
caacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTg < 2:1366672/93‑1 (MQ=255)
aacaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTgg > 1:7051952/1‑93 (MQ=255)
acaaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTggg > 1:2530290/1‑93 (MQ=255)
caaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGc < 2:7060672/93‑1 (MQ=255)
caaTACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGc < 2:5555273/93‑1 (MQ=255)
tACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTaa < 1:1620032/93‑1 (MQ=255)
tACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTaa < 1:7348782/93‑1 (MQ=255)
aCTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAc < 2:5622445/93‑1 (MQ=255)
gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa < 2:7141242/93‑1 (MQ=255)
gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa < 2:288103/93‑1 (MQ=255)
gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa < 2:106458/93‑1 (MQ=255)
gcgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTaa < 1:5654581/93‑1 (MQ=255)
cgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAg > 1:2080903/1‑93 (MQ=255)
cgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAg > 2:6098053/1‑93 (MQ=255)
cgcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAg > 1:7283575/1‑93 (MQ=255)
gcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGc > 2:2634580/1‑93 (MQ=255)
gcTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGc > 2:240393/1‑93 (MQ=255)
cTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGcc < 2:5273504/93‑1 (MQ=255)
tGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCa > 2:1013115/1‑93 (MQ=255)
tGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCa > 1:5357465/1‑93 (MQ=255)
tGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCa < 1:6119943/93‑1 (MQ=255)
atatTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATc > 1:4491393/1‑93 (MQ=255)
tatTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCa > 2:4238412/1‑93 (MQ=255)
tatTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCa > 1:1384691/1‑93 (MQ=255)
ttGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAcc > 2:5486218/1‑93 (MQ=255)
gtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCgg > 2:4734635/1‑93 (MQ=255)
gtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCgg < 1:6502920/93‑1 (MQ=255)
gtgAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCgg > 1:5919615/1‑93 (MQ=255)
tgAGCATGTGTAATTTCGTTGACTTTCGCGTTTTTTAATAGTCCATTGCGCAACCTCCCGATCTGTTCTAACGGACTGTAAGTCATCATCGGc > 2:7247439/1‑93 (MQ=255)
gcttgtgCATTTTTGTTGACTACCGCTTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATc < 2:7584448/90‑1 (MQ=255)
cATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATct > 2:267194/1‑93 (MQ=255)
cATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATct < 2:2155948/93‑1 (MQ=255)
cATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATct > 2:4973633/1‑93 (MQ=255)
tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCATCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc < 2:3323923/93‑1 (MQ=255)
tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc < 1:7499531/93‑1 (MQ=255)
tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc > 2:5824305/1‑93 (MQ=255)
tgtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgc > 1:1196703/1‑93 (MQ=255)
gtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCAgctgct > 2:2725757/1‑93 (MQ=255)
gtgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgct > 2:120991/1‑93 (MQ=255)
tgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGTCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgctg > 1:151897/1‑93 (MQ=255)
tgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgctg < 1:4375388/93‑1 (MQ=255)
tgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATctgctg > 1:4430963/1‑93 (MQ=255)
tgCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACAGGCATctgctg > 2:4600127/1‑93 (MQ=255)
cAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGtt < 1:4813483/93‑1 (MQ=255)
aaTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTg > 2:3641439/1‑93 (MQ=255)
aaTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTg > 1:899049/1‑93 (MQ=255)
aTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGc < 1:3069076/93‑1 (MQ=255)
aTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGc < 1:3455854/93‑1 (MQ=255)
aTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGc > 2:1348357/1‑93 (MQ=255)
aTTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGCCTAACGGACTGTAAACCATCCCCGGCATCGGCTGTTGc > 1:4849017/1‑93 (MQ=255)
tttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCt > 1:4145240/1‑93 (MQ=255)
ttCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTg < 2:6398483/93‑1 (MQ=255)
tCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTgg < 2:920142/93‑1 (MQ=255)
gTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCACGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCa > 2:407967/1‑93 (MQ=255)
ttGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAc > 1:5580032/1‑93 (MQ=255)
tGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAcc > 1:1006561/1‑93 (MQ=255)
tGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAcc > 1:5238098/1‑93 (MQ=255)
ctgccGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgg < 1:5847228/90‑1 (MQ=255)
tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg < 1:2637114/93‑1 (MQ=255)
tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg < 2:5103543/93‑1 (MQ=255)
tACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAggg > 1:5934391/1‑93 (MQ=255)
tccGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgggg < 2:7778091/92‑1 (MQ=255)
aCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAgggg > 1:3599936/1‑93 (MQ=255)
cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg > 2:4993764/1‑93 (MQ=255)
cgcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAg > 2:1953453/1‑93 (MQ=255)
gcgTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGt < 1:2695687/93‑1 (MQ=255)
cgTTGTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTa < 2:7855612/93‑1 (MQ=255)
ttttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGa > 2:6862925/1‑93 (MQ=255)
tattttAGCAGTCCATTGTGCAGCCGCCCGACCTGGGCTGACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGa < 2:7914378/91‑1 (MQ=255)
tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAt < 2:6018820/93‑1 (MQ=255)
tttttAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGCAGAt < 1:452242/93‑1 (MQ=255)
tAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTa > 1:4397865/1‑93 (MQ=255)
aaCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTTCTGTTGCTGGCACCAGGGGAGTAGATCGTAc < 1:790593/93‑1 (MQ=255)
aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt > 2:6566438/1‑93 (MQ=255)
aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt > 2:5213262/1‑93 (MQ=255)
aCAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACt > 2:7357592/1‑93 (MQ=255)
aGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCa > 1:5321044/1‑93 (MQ=255)
tCCATTGCGCAACCGCCCGACCTGGGCTAACGGTCTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAt < 1:5426877/93‑1 (MQ=255)
ccATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAAtt < 2:5317040/93‑1 (MQ=255)
cATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTc > 1:2979435/1‑93 (MQ=255)
cATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTc < 1:2288696/93‑1 (MQ=255)
cATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTc > 1:4991811/1‑93 (MQ=255)
cATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTc > 2:2527971/1‑93 (MQ=255)
aTTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc > 1:3538991/1‑93 (MQ=255)
aTTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTcc < 1:5218615/93‑1 (MQ=255)
ttGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCt > 1:3791264/1‑93 (MQ=255)
ttGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCt > 2:5733524/1‑93 (MQ=255)
ttGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCt < 1:3661450/93‑1 (MQ=255)
tGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTc < 2:6658289/93‑1 (MQ=255)
gcAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTg > 2:6324173/1‑93 (MQ=255)
cAACCGCCGGCCCTGTGCCAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGCCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGa < 2:3086605/93‑1 (MQ=255)
cAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGa > 1:2269875/1‑93 (MQ=255)
aaCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGaa < 1:6154218/93‑1 (MQ=255)
aCCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAc < 2:1586635/93‑1 (MQ=255)
cccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgag > 1:7261157/1‑93 (MQ=255)
ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga > 1:4177651/1‑93 (MQ=255)
ccGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCgaga < 2:2261741/93‑1 (MQ=255)
|
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA > NC_000913/1862975‑1863154
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > NC_000913/1862972‑1863157
|
CACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGA < SRR4302543.493773/94‑1 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT > SRR4302543.1372616/1‑94 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT > SRR4302543.1372861/1‑94 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT < SRR4302543.2501689/94‑1 (MQ=60)
GCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCT > SRR4302543.1975856/1‑94 (MQ=60)
CAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGG > SRR4302543.7120381/1‑94 (MQ=60)
CAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGG > SRR4302543.6349631/1‑94 (MQ=60)
AACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGG > SRR4302543.2553316/1‑94 (MQ=60)
AACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGG > SRR4302543.846452/1‑94 (MQ=60)
TACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC < SRR4302543.7419475/94‑1 (MQ=60)
TACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC < SRR4302543.156003/94‑1 (MQ=60)
TACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAAC < SRR4302543.1634470/94‑1 (MQ=60)
ACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACG > SRR4302543.5425949/1‑94 (MQ=60)
CTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGG < SRR4302543.5379203/94‑1 (MQ=60)
TTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGTGCTAACGGA > SRR4302543.4418536/1‑94 (MQ=60)
TTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGA > SRR4302543.939635/1‑94 (MQ=60)
TCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGT < SRR4302543.2030130/94‑1 (MQ=60)
GCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAG > SRR4302543.2099489/1‑94 (MQ=60)
GCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAG > SRR4302543.7353905/1‑94 (MQ=60)
GCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAG < SRR4302543.5706134/94‑1 (MQ=60)
CGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGC > SRR4302543.304019/1‑94 (MQ=60)
CTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCA > SRR4302543.5405954/1‑94 (MQ=60)
TGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCAT < SRR4302543.6177907/94‑1 (MQ=60)
TGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGCACTGTAAGCCAT > SRR4302543.5851637/1‑94 (MQ=60)
GATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATC > SRR4302543.4532208/1‑94 (MQ=60)
ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA > SRR4302543.4487068/1‑94 (MQ=60)
ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA > SRR4302543.1397153/1‑94 (MQ=60)
ATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCA < SRR4302543.6080836/94‑1 (MQ=60)
TATTGTGAGCGTGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCAC < SRR4302543.2294477/94‑1 (MQ=60)
ATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACC > SRR4302543.7380107/1‑94 (MQ=60)
TGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGG > SRR4302543.5973688/1‑94 (MQ=60)
GTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGC < SRR4302543.6564177/94‑1 (MQ=60)
AGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATC > SRR4302543.4535234/1‑94 (MQ=60)
CATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTG < SRR4302543.1086415/94‑1 (MQ=60)
ATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGC > SRR4302543.1207484/1‑94 (MQ=60)
ATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGC > SRR4302543.3929023/1‑94 (MQ=60)
TGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCT < SRR4302543.7571248/94‑1 (MQ=60)
GTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGTCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTG > SRR4302543.153212/1‑94 (MQ=60)
GTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTG > SRR4302543.4471100/1‑94 (MQ=60)
GTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTG > SRR4302543.4471099/1‑94 (MQ=60)
GTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTG > SRR4302543.6178316/1‑94 (MQ=60)
TGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGT < SRR4302543.4415029/94‑1 (MQ=60)
GAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTG < SRR4302543.4857438/94‑1 (MQ=60)
CAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTG > SRR4302543.7549121/1‑94 (MQ=60)
CAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTG < SRR4302543.4857437/94‑1 (MQ=60)
CAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTG > SRR4302543.906985/1‑94 (MQ=60)
CAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTG > SRR4302543.2580983/1‑94 (MQ=60)
AATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGC < SRR4302543.6027671/94‑1 (MQ=60)
AATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGCCTAACGGACTGTAAACCATCCCCGGCATCGGCTGTTGC > SRR4302543.4893235/1‑94 (MQ=60)
ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT > SRR4302543.567527/1‑94 (MQ=60)
ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT > SRR4302543.4182697/1‑94 (MQ=60)
ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT < SRR4302543.3486800/94‑1 (MQ=60)
ATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCT < SRR4302543.3096680/94‑1 (MQ=60)
TTTCGTTGACTCCAGAGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTG < SRR4302543.4721304/94‑1 (MQ=60)
TTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGG < SRR4302543.3683906/94‑1 (MQ=60)
GTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAC > SRR4302543.5630831/1‑94 (MQ=60)
GTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAC > SRR4302543.5979372/1‑94 (MQ=60)
GTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCAC < SRR4302543.2718783/94‑1 (MQ=60)
TTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACC > SRR4302543.5285300/1‑94 (MQ=60)
TTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACC > SRR4302543.1015465/1‑94 (MQ=60)
TTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACC > SRR4302543.5285299/1‑94 (MQ=60)
TGACTACCGCGTTTTTTAACAGTCCATTGAGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCA < SRR4302543.2196661/94‑1 (MQ=60)
ACTACCGCGTGTTTTAACAGTACATTGCGCAACCGCCCGTCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCGCCAGG < SRR4302543.5353477/94‑1 (MQ=60)
CTGCCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG < SRR4302543.5900429/94‑1 (MQ=60)
CTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG > SRR4302543.5988669/1‑94 (MQ=60)
CTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGG > SRR4302543.3711837/1‑94 (MQ=60)
TACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG > SRR4302543.3631707/1‑94 (MQ=60)
TACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGG < SRR4302543.2660996/94‑1 (MQ=60)
CCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAG < SRR4302543.1482215/94‑1 (MQ=60)
CCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAG > SRR4302543.408829/1‑94 (MQ=60)
CGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGT > SRR4302543.1769993/1‑94 (MQ=60)
CGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGT < SRR4302543.2382723/94‑1 (MQ=60)
CGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGT < SRR4302543.4199687/94‑1 (MQ=60)
GCGTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTA < SRR4302543.2720126/94‑1 (MQ=60)
GTTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGA > SRR4302543.5556582/1‑94 (MQ=60)
TTTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGTCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGAT > SRR4302543.7718275/1‑94 (MQ=60)
TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATC < SRR4302543.939974/94‑1 (MQ=60)
TTTTTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGCAGATC < SRR4302543.456460/94‑1 (MQ=60)
TTAACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTA > SRR4302543.4437733/1‑94 (MQ=60)
AACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTTCTGTTGCTGGCACCAGGGGAGTAGATCGTACT < SRR4302543.797541/94‑1 (MQ=60)
AACAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGGACT > SRR4302543.328160/1‑94 (MQ=60)
CAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCA > SRR4302543.5369136/1‑94 (MQ=60)
CAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCA > SRR4302543.5243488/1‑94 (MQ=60)
CAGTCCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCA > SRR4302543.2833610/1‑94 (MQ=60)
TCCATTGCGCAACCGCCCGACCTGGGCTAACGGTCTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATT < SRR4302543.5476195/94‑1 (MQ=60)
CCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTC < SRR4302543.4913688/94‑1 (MQ=60)
CCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTC > SRR4302543.5037250/1‑94 (MQ=60)
CCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTC > SRR4302543.5970402/1‑94 (MQ=60)
CCATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTC > SRR4302543.3006488/1‑94 (MQ=60)
CATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCC < SRR4302543.2309593/94‑1 (MQ=60)
CATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCC > SRR4302543.3570454/1‑94 (MQ=60)
ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT < SRR4302543.7340559/94‑1 (MQ=60)
ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT < SRR4302543.7074073/94‑1 (MQ=60)
ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT > SRR4302543.3824667/1‑94 (MQ=60)
ATTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCT < SRR4302543.5265616/94‑1 (MQ=60)
TTGCGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTC < SRR4302543.3693605/94‑1 (MQ=60)
CGCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTG > SRR4302543.5224810/1‑94 (MQ=60)
GCAACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGA > SRR4302543.2290608/1‑94 (MQ=60)
AACCGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAAC < SRR4302543.6212475/94‑1 (MQ=60)
CGCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGAAGATCGTACTCAATTCCTCGTGAACCGA > SRR4302543.1221698/1‑94 (MQ=60)
GCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCCCCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAG < SRR4302543.7228979/94‑1 (MQ=60)
GCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAG > SRR4302543.7331325/1‑94 (MQ=60)
GCCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAG < SRR4302543.3620769/94‑1 (MQ=60)
CCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA > SRR4302543.4215499/1‑94 (MQ=60)
CCCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGA > SRR4302543.4215724/1‑94 (MQ=60)
CCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGAT < SRR4302543.3532923/94‑1 (MQ=60)
CCGACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGAT > SRR4302543.6296019/1‑94 (MQ=60)
GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > SRR4302543.4989049/1‑94 (MQ=60)
GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > SRR4302543.6471450/1‑94 (MQ=60)
GACCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGGAGATGGGACTCAATTTCTCGTGAACCGAGGTGG > SRR4302543.6471451/1‑94 (MQ=60)
GACCTGGGCGAACGGACGGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG < SRR4302543.1536543/94‑1 (MQ=60)
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CACGCCAACAATACTTGTGCCGCGCTGATATTGTGAGCATGTGCAATTTCGTTGACTACCGCGTTTTTTAACAGTCCATTGCGCAACCGCCCGGCCTGGGCTAACGGACTGTAAGCCATCACCGGCATCTGCTGTTGCTGGCACCAGGGGAGTAGATCGTACTCAATTCCTCGTGAACCGAGATGG > NC_000913/1862972‑1863157
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
