Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,866,382 |
G→A |
G484D (GGC→GAC) |
yeaG → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,866,382 | 0 | G | A | 99.2%
| 439.6
/ ‑5.3
| 123 | G484D (GGC→GAC) | yeaG | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (47/75); total (47/76) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.37e-01 |
Only 100 of 125 total aligned reads displayed.
TTGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGA > NC_000913/1866292‑1866471
|
ttGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACa < 2:3911635/93‑1 (MQ=255)
tGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACaa < 1:3920667/93‑1 (MQ=255)
gAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACaaa < 2:2991185/93‑1 (MQ=255)
gAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACaaa < 2:3110594/93‑1 (MQ=255)
gAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACaaa < 1:2083634/93‑1 (MQ=255)
aGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAag < 1:508482/93‑1 (MQ=255)
aGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAag < 1:3300899/93‑1 (MQ=255)
gcgcGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAaga < 2:2735899/93‑1 (MQ=255)
cgAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGAt < 2:378508/93‑1 (MQ=255)
gAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATc < 2:2139234/93‑1 (MQ=255)
aGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATcc < 2:1600967/93‑1 (MQ=255)
cAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAg < 2:3963483/93‑1 (MQ=255)
aGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAATAGATCCAGa < 1:4682344/93‑1 (MQ=255)
gTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGAc < 1:3248020/93‑1 (MQ=255)
gTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGAc < 1:485745/93‑1 (MQ=255)
ttCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACg < 2:4589330/93‑1 (MQ=255)
tCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACgg < 1:1616080/93‑1 (MQ=255)
cccACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGc > 2:2411536/1‑93 (MQ=255)
cccACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGc < 2:3486493/93‑1 (MQ=255)
caAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTAc < 1:3061926/93‑1 (MQ=255)
aaGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTAcc < 1:2309596/93‑1 (MQ=255)
aaGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTAcc > 2:1340875/1‑93 (MQ=255)
agagCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCt < 2:3422784/93‑1 (MQ=255)
gagCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCtt > 2:475793/1‑93 (MQ=255)
gagCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCtt < 2:1126299/93‑1 (MQ=255)
gagCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCtt < 1:3656219/93‑1 (MQ=255)
gcaggcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGa > 2:3658913/1‑93 (MQ=255)
caggcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGaa < 2:362185/93‑1 (MQ=255)
caggcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGaa < 2:1862704/93‑1 (MQ=255)
caggcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGaa < 2:4669921/93‑1 (MQ=255)
aggcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAAt < 1:1354891/93‑1 (MQ=255)
aggcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAAt < 2:2086977/93‑1 (MQ=255)
ggcagAACTCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATCCCGAGTTTATCGACAAAGAGATCCAGACGCCCTACCTTGAATc < 1:1929236/93‑1 (MQ=255)
ggcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATc > 2:4334974/1‑93 (MQ=255)
gcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATcc < 1:4339085/93‑1 (MQ=255)
gcagAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATcc < 2:468501/93‑1 (MQ=255)
agAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTa < 2:3773116/93‑1 (MQ=255)
agAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTa < 2:2554244/93‑1 (MQ=255)
gAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTAt < 1:3630179/93‑1 (MQ=255)
gAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTAt > 1:2019328/1‑93 (MQ=255)
gAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTAt < 1:4237517/93‑1 (MQ=255)
aCGCTATCTGGAGTGCCTGAAAGGTTATCTGATCCCGAAAGATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTc < 1:851648/93‑1 (MQ=255)
gCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCg < 1:1281960/93‑1 (MQ=255)
cTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGa < 2:2018292/93‑1 (MQ=255)
tATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGaa > 2:1488694/1‑93 (MQ=255)
aTCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAat > 1:2297625/1‑93 (MQ=255)
aTCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAat > 1:3145218/1‑93 (MQ=255)
tCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAata < 2:2415742/93‑1 (MQ=255)
tGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATg < 1:2449928/93‑1 (MQ=255)
ggAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATgg < 2:4484065/93‑1 (MQ=255)
ggAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATgg > 2:1666895/1‑93 (MQ=255)
gAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATggg < 1:2536968/93‑1 (MQ=255)
gAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATggg > 1:2084387/1‑93 (MQ=255)
aGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGc < 2:640151/93‑1 (MQ=255)
aGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGc < 2:1652371/93‑1 (MQ=255)
ttCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCaa > 1:1741609/1‑93 (MQ=255)
ttCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCaa > 1:363613/1‑93 (MQ=255)
tCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCaaa > 1:1150619/1‑93 (MQ=255)
tCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCaaa < 1:373665/93‑1 (MQ=255)
tGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACa > 2:3358630/1‑93 (MQ=255)
aaaGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACAtt < 2:1811827/93‑1 (MQ=255)
aaGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACAttt < 2:1530026/93‑1 (MQ=255)
aaGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACAttt > 2:679356/1‑93 (MQ=255)
aaGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACAttt < 2:2655279/93‑1 (MQ=255)
aGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACAtttt > 2:1891876/1‑93 (MQ=255)
ggTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTc < 2:4037879/93‑1 (MQ=255)
ggTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTc < 2:245415/93‑1 (MQ=255)
agTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCTTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTc < 2:2329605/92‑1 (MQ=255)
agTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTc < 2:1575402/92‑1 (MQ=255)
ttATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGa > 1:362583/1‑93 (MQ=255)
ttATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGa > 1:905490/1‑93 (MQ=255)
aTCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGAcc > 1:1356985/1‑93 (MQ=255)
tCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCg > 1:3079684/1‑93 (MQ=255)
tCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCg > 1:4380331/1‑93 (MQ=255)
tCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCg > 1:3902426/1‑93 (MQ=255)
tCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATg > 2:1048194/1‑93 (MQ=255)
cccGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGt < 2:3058646/93‑1 (MQ=255)
ccGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGtt > 1:2618403/1‑93 (MQ=255)
ccGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGtt > 2:2671387/1‑93 (MQ=255)
gAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTAc < 2:4649448/93‑1 (MQ=255)
gAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTAc > 1:859870/1‑93 (MQ=255)
aaTATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCt < 2:2995105/93‑1 (MQ=255)
aaTATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCt > 2:1124560/1‑93 (MQ=255)
atatGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTa > 2:2760366/1‑93 (MQ=255)
atatGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTa > 1:1549550/1‑93 (MQ=255)
atatGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTa < 2:4243076/93‑1 (MQ=255)
tGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTAcgc < 1:2428256/93‑1 (MQ=255)
tGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTAcgc > 1:3425204/1‑93 (MQ=255)
tGCCGAGTTTATCGACAAAGAGAGCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTAcgc < 1:1800927/93‑1 (MQ=255)
cGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGa > 2:1155367/1‑93 (MQ=255)
gAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGAt > 1:3357066/1‑93 (MQ=255)
aGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGAtt > 1:3400231/1‑93 (MQ=255)
tttATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTc < 2:2198081/93‑1 (MQ=255)
ttATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCt < 1:2552556/93‑1 (MQ=255)
ttATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCt > 2:683436/1‑93 (MQ=255)
tATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTTCGCGGATTTCTg < 1:3779951/93‑1 (MQ=255)
tATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTg < 1:4563848/93‑1 (MQ=255)
tATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTg > 1:4295708/1‑93 (MQ=255)
tCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGa < 1:2667841/93‑1 (MQ=255)
tCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGa < 2:938652/93‑1 (MQ=255)
|
TTGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGA > NC_000913/1866292‑1866471
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGATTGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGATTC > NC_000913/1866289‑1866474
|
AGATTGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGA > SRR4302535.4154768/1‑94 (MQ=60)
AGATTGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGA > SRR4302535.1791338/1‑94 (MQ=60)
TGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAA < SRR4302535.3947474/94‑1 (MQ=60)
GAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAG < SRR4302535.4503613/94‑1 (MQ=60)
GAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAG < SRR4302535.2098639/94‑1 (MQ=60)
AGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGA < SRR4302535.512039/94‑1 (MQ=60)
AGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGA < SRR4302535.3323851/94‑1 (MQ=60)
GCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAG < SRR4302535.4222992/94‑1 (MQ=60)
AGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAATAGATCCAGAC < SRR4302535.4713998/94‑1 (MQ=60)
GTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACG < SRR4302535.3270581/94‑1 (MQ=60)
GTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACG < SRR4302535.489150/94‑1 (MQ=60)
TCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGC < SRR4302535.1627727/94‑1 (MQ=60)
CAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACC < SRR4302535.3083336/94‑1 (MQ=60)
AAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCT < SRR4302535.2326126/94‑1 (MQ=60)
GAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTG < SRR4302535.3681528/94‑1 (MQ=60)
CAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAAT < SRR4302535.3622593/94‑1 (MQ=60)
AGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATC < SRR4302535.1364582/94‑1 (MQ=60)
GGCAGAACTCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATCCCGAGTTTATCGACAAAGAGATCCAGACGCCCTACCTTGAATCC < SRR4302535.1943140/94‑1 (MQ=60)
GCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCT < SRR4302535.4368757/94‑1 (MQ=60)
AGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTAT > SRR4302535.2033883/1‑94 (MQ=60)
GAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATT < SRR4302535.4266516/94‑1 (MQ=60)
GAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATT < SRR4302535.3655340/94‑1 (MQ=60)
ACGCTATCTGGAGTGCCTGAAAGGTTATCTGATCCCGAAAGATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCC < SRR4302535.857645/94‑1 (MQ=60)
CGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCG > SRR4302535.514136/1‑94 (MQ=60)
GCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGA < SRR4302535.1291106/94‑1 (MQ=60)
TATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAAT > SRR4302535.2314067/1‑94 (MQ=60)
TATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAAT > SRR4302535.3167091/1‑94 (MQ=60)
TGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGG < SRR4302535.2467583/94‑1 (MQ=60)
GGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGG < SRR4302535.3271786/94‑1 (MQ=60)
GGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGG > SRR4302535.2099400/1‑94 (MQ=60)
GAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGC < SRR4302535.2555245/94‑1 (MQ=60)
GTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAA > SRR4302535.1754196/1‑94 (MQ=60)
GTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAA > SRR4302535.366120/1‑94 (MQ=60)
TTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAA > SRR4302535.1158838/1‑94 (MQ=60)
TCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAA < SRR4302535.376253/94‑1 (MQ=60)
GTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGA > SRR4302535.911916/1‑94 (MQ=60)
GTTATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGA > SRR4302535.365084/1‑94 (MQ=60)
TATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACC > SRR4302535.1366693/1‑94 (MQ=60)
ATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCG > SRR4302535.3101157/1‑94 (MQ=60)
ATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCG > SRR4302535.3929160/1‑94 (MQ=60)
ATCTGATCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCG > SRR4302535.4410300/1‑94 (MQ=60)
TCCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGT > SRR4302535.1460823/1‑94 (MQ=60)
CCCGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTT > SRR4302535.2637175/1‑94 (MQ=60)
CGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTAC > SRR4302535.865940/1‑94 (MQ=60)
CGAAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTAC > SRR4302535.1925472/1‑94 (MQ=60)
AAATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCT < SRR4302535.2915588/94‑1 (MQ=60)
AATATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTA > SRR4302535.1560713/1‑94 (MQ=60)
ATGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGC > SRR4302535.3449022/1‑94 (MQ=60)
TGCCGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCG < SRR4302535.2445755/94‑1 (MQ=60)
TGCCGAGTTTATCGACAAAGAGAGCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCG < SRR4302535.1813945/94‑1 (MQ=60)
CGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGAT < SRR4302535.2502641/94‑1 (MQ=60)
CGAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGAT > SRR4302535.3380437/1‑94 (MQ=60)
GAGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATT > SRR4302535.3423894/1‑94 (MQ=60)
AGTTTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTT > SRR4302535.3691346/1‑94 (MQ=60)
TTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTG > SRR4302535.4325101/1‑94 (MQ=60)
TTATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTG < SRR4302535.2570935/94‑1 (MQ=60)
TATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTTCGCGGATTTCTGG < SRR4302535.3806039/94‑1 (MQ=60)
TATCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGG < SRR4302535.4594992/94‑1 (MQ=60)
TCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGAT < SRR4302535.2311331/94‑1 (MQ=60)
TCGACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGAT < SRR4302535.2686936/94‑1 (MQ=60)
GACAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGATTC > SRR4302535.390688/1‑94 (MQ=60)
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AGATTGAGCGCGAGCAGTTCCCACAAGAGCAGGCAGAACGCTATCTGGAGTTCCTGAAAGGTTATCTGATCCCGAAATATGCCGAGTTTATCGGCAAAGAGATCCAGACGGCCTACCTTGAATCCTATTCCGAATATGGGCAAAACATTTTCGACCGTTATGTTACCTACGCGGATTTCTGGATTC > NC_000913/1866289‑1866474
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
