Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,890,225 |
C→T |
R345R (CGG→CGA) |
b1808 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,890,225 | 0 | C | T | 100.0%
| 403.9
/ NA
| 112 | R345R (CGG→CGA) | b1808 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (58/54); total (58/54) |
Only 100 of 116 total aligned reads displayed.
AGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTT > NC_000913/1890136‑1890313
|
aGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCgt > 2:2287537/1‑93 (MQ=255)
gcggcgTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCgtg > 1:3171274/1‑93 (MQ=255)
gcggcgTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCgtg < 1:3632242/93‑1 (MQ=255)
gcggcgTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCgtg > 1:2209084/1‑93 (MQ=255)
gcggcgTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCgtg > 2:1894088/1‑93 (MQ=255)
cggcgTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCgtgt < 1:1664379/93‑1 (MQ=255)
gcgTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGc > 1:4670628/1‑93 (MQ=255)
gcgTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGc > 1:4580538/1‑93 (MQ=255)
gTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGa < 1:1738752/93‑1 (MQ=255)
gTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGa < 1:4316217/93‑1 (MQ=255)
tGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGAt > 2:1329190/1‑93 (MQ=255)
tGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGAt < 1:2311019/93‑1 (MQ=255)
gagaGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATa < 1:2112998/93‑1 (MQ=255)
gagaGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATa < 2:3804156/93‑1 (MQ=255)
gCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAAc > 2:663275/1‑93 (MQ=255)
ccggagTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACg > 1:1179444/4‑93 (MQ=255)
cAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGt > 2:4339933/1‑93 (MQ=255)
cAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGt > 2:653998/1‑93 (MQ=255)
agagTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTg < 1:3204121/93‑1 (MQ=255)
gagTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTgg > 1:1468494/1‑93 (MQ=255)
agTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgc < 1:550963/93‑1 (MQ=255)
agTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgc < 2:1162368/93‑1 (MQ=255)
agTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgc < 2:2449129/93‑1 (MQ=255)
agTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgc > 1:2141808/1‑93 (MQ=255)
gTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTTTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgcg > 1:144208/1‑93 (MQ=255)
tAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgcgc > 2:3634963/1‑93 (MQ=255)
tAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgcgc < 2:3789690/93‑1 (MQ=255)
tAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgcgc > 1:2467595/1‑93 (MQ=255)
aaaaTGGCCCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgcgcg > 2:4584868/1‑93 (MQ=255)
aaaTGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgcgcgc < 2:2177831/93‑1 (MQ=255)
aaTGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGgcgcgtt < 2:2960098/93‑3 (MQ=255)
gcgcGGAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCaaa < 1:4487660/93‑1 (MQ=255)
gcgcGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCaaa < 1:2331765/93‑1 (MQ=255)
gcgcGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCaaa < 1:2255625/93‑1 (MQ=255)
gcgcGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCaaa < 1:2544587/93‑1 (MQ=255)
cgcgAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAAt > 1:4123790/1‑93 (MQ=255)
gcgAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATg > 2:3159994/1‑93 (MQ=255)
gcgAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATg < 2:1773827/93‑1 (MQ=255)
cgAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGc < 2:3961448/93‑1 (MQ=255)
gAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGcc > 2:2140063/1‑93 (MQ=255)
aGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGc > 2:4580200/1‑93 (MQ=255)
gTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCa > 1:3210564/1‑93 (MQ=255)
cATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATcc > 2:211794/1‑93 (MQ=255)
aTTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCa > 1:1062476/1‑93 (MQ=255)
tCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGc < 1:1045582/93‑1 (MQ=255)
tCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGc > 2:3076639/1‑93 (MQ=255)
cGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCa < 1:3768920/93‑1 (MQ=255)
gTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCaa < 1:962926/93‑1 (MQ=255)
gTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCaa < 1:2956988/93‑1 (MQ=255)
gTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCaa < 2:2927294/93‑1 (MQ=255)
tACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAg > 2:44699/1‑93 (MQ=255)
ccAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGc < 2:1537019/93‑1 (MQ=255)
tAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGaa < 2:4545732/93‑1 (MQ=255)
tAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGaa < 1:2522564/93‑1 (MQ=255)
gCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACg > 2:74543/1‑93 (MQ=255)
cTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGc > 1:119937/1‑93 (MQ=255)
aGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCa > 2:3536249/1‑93 (MQ=255)
gCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAg > 2:3056150/1‑93 (MQ=255)
cccGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGt < 2:4275601/93‑1 (MQ=255)
ccGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTg < 1:2230479/93‑1 (MQ=255)
cGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGa > 1:3092900/1‑93 (MQ=255)
gCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCCGTGACa > 2:1624270/1‑93 (MQ=255)
cTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAg < 2:2043996/93‑1 (MQ=255)
gattgatCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGGCGCATCCAGCAAAGCGGAACGGCCCAGTGagaggt > 2:2509781/1‑91 (MQ=255)
gattgatCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGtt > 1:1480191/1‑93 (MQ=255)
attgatCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGttt > 2:3855902/1‑93 (MQ=255)
attgatCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGttt < 2:4596635/93‑1 (MQ=255)
ttgatCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTc < 2:1664133/93‑1 (MQ=255)
gatCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGc > 2:2560253/1‑93 (MQ=255)
atCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGcc < 1:943832/93‑1 (MQ=255)
atCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGcc > 2:2248668/1‑93 (MQ=255)
atCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGcc > 2:3569264/1‑93 (MQ=255)
tctcTTTTAGCCGCTTCAGTCGTGTGCGATACCACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCa > 2:2133020/1‑93 (MQ=255)
tctcTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGTCCCAGTGACAGTTTTGctc > 2:786685/1‑91 (MQ=255)
tctcTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCa > 2:1542163/1‑93 (MQ=255)
tctcTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTCACAGCTTCGCCa > 2:4526735/1‑93 (MQ=255)
tctTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACg > 1:4421539/1‑93 (MQ=255)
ttttAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTc > 2:3107301/1‑93 (MQ=255)
ttttAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTc < 1:1826284/93‑1 (MQ=255)
tttAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCa > 2:4342975/1‑93 (MQ=255)
tAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATa < 1:1847472/93‑1 (MQ=255)
tAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATa < 2:1781405/93‑1 (MQ=255)
ggCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCGGTGACAGTTTCGCCACGTCATaa < 2:2969418/92‑1 (MQ=255)
aGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATaa < 2:994981/93‑1 (MQ=255)
aGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATaa < 2:1992628/93‑1 (MQ=255)
aGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATaa < 1:1855771/93‑1 (MQ=255)
gCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAAc < 1:3475613/93‑1 (MQ=255)
gCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAAc > 2:3438412/1‑93 (MQ=255)
gCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAAc < 1:296529/93‑1 (MQ=255)
cGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACaa < 1:3680507/93‑1 (MQ=255)
gCTTCAGTCGTGTGCGATACACCGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACaaa < 1:4252140/93‑1 (MQ=255)
cTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAg > 2:891549/1‑93 (MQ=255)
cTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAg < 2:2451388/93‑1 (MQ=255)
ttCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGt > 2:3992820/1‑93 (MQ=255)
ttCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGt > 2:1825807/1‑93 (MQ=255)
ttCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGt > 1:70530/1‑93 (MQ=255)
ttCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGt > 2:1024868/1‑93 (MQ=255)
ttCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGt > 2:256312/1‑93 (MQ=255)
tgcAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGt < 2:2693921/91‑1 (MQ=255)
tCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGtt < 2:1821244/93‑1 (MQ=255)
|
AGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTT > NC_000913/1890136‑1890313
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGAGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCAGG > NC_000913/1890133‑1890318
|
CTGAGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTC < SRR4302535.3025960/94‑1 (MQ=60)
CTGAGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTC > SRR4302535.559635/1‑94 (MQ=60)
CTGAGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTC > SRR4302535.4335415/1‑94 (MQ=60)
TGAGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCG < SRR4302535.1049421/94‑1 (MQ=60)
AGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTG > SRR4302535.3193232/1‑94 (MQ=60)
AGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTG > SRR4302535.2224819/1‑94 (MQ=60)
GCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGT < SRR4302535.3657416/94‑1 (MQ=60)
CGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTG < SRR4302535.1676407/94‑1 (MQ=60)
GGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGC > SRR4302535.4611735/1‑94 (MQ=60)
GGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGC > SRR4302535.4702175/1‑94 (MQ=60)
GTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGAT < SRR4302535.1751318/94‑1 (MQ=60)
GTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGAT < SRR4302535.4345743/94‑1 (MQ=60)
TGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATA < SRR4302535.2327557/94‑1 (MQ=60)
GAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATAC < SRR4302535.2128248/94‑1 (MQ=60)
GCCGGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACG > SRR4302535.1187860/1‑94 (MQ=60)
AGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGG < SRR4302535.3226311/94‑1 (MQ=60)
AGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGG > SRR4302535.1479015/1‑94 (MQ=60)
GAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGC > SRR4302535.2157221/1‑94 (MQ=60)
GAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGC > SRR4302535.1616609/1‑94 (MQ=60)
AGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTTTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCG > SRR4302535.145213/1‑94 (MQ=60)
AGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCG < SRR4302535.554819/94‑1 (MQ=60)
GTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGC > SRR4302535.2485384/1‑94 (MQ=60)
GCGCGGAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAAT < SRR4302535.4518468/94‑1 (MQ=60)
GCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAAT < SRR4302535.2271684/94‑1 (MQ=60)
GCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAAT < SRR4302535.2348443/94‑1 (MQ=60)
GCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAAT > SRR4302535.4152009/1‑94 (MQ=60)
GCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAAT < SRR4302535.2562907/94‑1 (MQ=60)
AGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCA > SRR4302535.3232802/1‑94 (MQ=60)
CATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCA > SRR4302535.1070038/1‑94 (MQ=60)
TCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCA < SRR4302535.1052990/94‑1 (MQ=60)
CGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAA < SRR4302535.3794934/94‑1 (MQ=60)
GTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAG < SRR4302535.2977756/94‑1 (MQ=60)
GTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAG < SRR4302535.969765/94‑1 (MQ=60)
TAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAAC < SRR4302535.2540741/94‑1 (MQ=60)
GCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGC > SRR4302535.120777/1‑94 (MQ=60)
CCCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTG < SRR4302535.3181920/94‑1 (MQ=60)
CCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGA > SRR4302535.3114439/1‑94 (MQ=60)
CCGGCTGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGA < SRR4302535.2246338/94‑1 (MQ=60)
TGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTT > SRR4302535.1490780/1‑94 (MQ=60)
TGATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTT > SRR4302535.2437857/1‑94 (MQ=60)
GATTGATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTT < SRR4302535.4653413/94‑1 (MQ=60)
ATCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCA < SRR4302535.950510/94‑1 (MQ=60)
TCTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCAC < SRR4302535.2130316/94‑1 (MQ=60)
CTCTTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACG > SRR4302535.4451818/1‑94 (MQ=60)
TTTTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCA < SRR4302535.1839466/94‑1 (MQ=60)
TTAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATA < SRR4302535.4147748/94‑1 (MQ=60)
TAGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAA < SRR4302535.1860785/94‑1 (MQ=60)
AGCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAAC < SRR4302535.1869139/94‑1 (MQ=60)
GCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACA < SRR4302535.298594/94‑1 (MQ=60)
GCCGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACA < SRR4302535.3499766/94‑1 (MQ=60)
CGCTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAA < SRR4302535.3705979/94‑1 (MQ=60)
GCTTCAGTCGTGTGCGATACACCGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAG < SRR4302535.4281277/94‑1 (MQ=60)
CTTCAGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGT > SRR4302535.71046/1‑94 (MQ=60)
AGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCA > SRR4302535.4553668/1‑94 (MQ=60)
AGTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCA > SRR4302535.1263937/1‑94 (MQ=60)
GTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCAG > SRR4302535.1481809/1‑94 (MQ=60)
GTCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCAG > SRR4302535.999457/1‑94 (MQ=60)
TCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCAGG < SRR4302535.3845371/94‑1 (MQ=60)
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CTGAGCGGCGTGAGAGCCAGAGTAAAATGGCGCGAAGTGCATTCGTACCAGTAGCTGTAGCCCGGCTGATTGATCTCTTTTAGCCGCTTCAGCCGTGTGCGATACAACGTGGCGCGCTCAAATGCCGCATCCAGCAAGGCGGAACGCCCCAGTGACAGTTTCGCCACGTCATAACAAAGTTCCAGG > NC_000913/1890133‑1890318
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
