Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,890,766 |
T→C |
N165S (AAC→AGC) |
b1808 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,890,766 | 0 | T | C | 100.0%
| 353.3
/ NA
| 113 | N165S (AAC→AGC) | b1808 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (59/54); total (59/54) |
Only 100 of 120 total aligned reads displayed.
CCACCACATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGTTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCAG > NC_000913/1890677‑1890855
|
ccacATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGc > 1:3170909/1‑93 (MQ=255)
acaTCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTg > 2:2741281/1‑93 (MQ=255)
acaTCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTg > 1:3968576/1‑93 (MQ=255)
aTCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCgctggtgctggt > 1:2441865/1‑93 (MQ=255)
tCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGctggtgctggtg > 1:676419/1‑93 (MQ=255)
tCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGctggtgctggtg > 1:3857623/1‑93 (MQ=255)
cGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGa > 1:4609331/1‑93 (MQ=255)
cGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTAGACATCGGGCAGACGCTGCCAAGACAGTTGTCGctggtgctggtgg < 2:788433/93‑2 (MQ=255)
gCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGAcc > 1:444186/1‑93 (MQ=255)
cGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCa > 1:3763624/1‑93 (MQ=255)
gTCCTTCGTTTTTTTACGTGCTTTGCCCAAAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAg < 2:2503516/93‑1 (MQ=255)
tCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAgg > 2:1554878/1‑92 (MQ=255)
tCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGc > 1:1025064/1‑93 (MQ=255)
tCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGc > 1:2578966/1‑93 (MQ=255)
tCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGCCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGc < 2:1295817/93‑1 (MQ=255)
cATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCgg < 1:2154744/93‑1 (MQ=255)
aTCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCcgccgc > 2:422557/1‑93 (MQ=255)
aTCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGc > 1:2780971/1‑93 (MQ=255)
aTCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGc > 1:2997530/1‑93 (MQ=255)
tCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGcc > 1:2849218/1‑93 (MQ=255)
tCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGcc > 1:1721268/1‑93 (MQ=255)
cGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCa < 1:1056690/93‑1 (MQ=255)
gCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCAc > 1:1452009/1‑93 (MQ=255)
ttttttACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGc < 1:1655769/93‑1 (MQ=255)
ttttttACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGc > 2:1914843/1‑93 (MQ=255)
tttttACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGcc < 2:1625304/93‑1 (MQ=255)
ttttACGTGCTTTGACCCCAGAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCt < 1:3099542/93‑1 (MQ=255)
tttACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCtg > 2:3213545/1‑93 (MQ=255)
ttACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCtgt < 1:2085396/93‑1 (MQ=255)
ttACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCtgt < 1:1410434/93‑1 (MQ=255)
cGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGaa > 2:1952223/1‑93 (MQ=255)
cTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCtt > 1:2849424/1‑93 (MQ=255)
cTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCtt > 2:3987852/1‑93 (MQ=255)
tttGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTc < 2:1181029/93‑1 (MQ=255)
ccACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCa < 2:771926/93‑1 (MQ=255)
ccACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCa > 1:2317659/1‑93 (MQ=255)
cacaAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCAc < 2:2174670/93‑1 (MQ=255)
cacaAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCAc < 2:1884902/93‑1 (MQ=255)
cacaAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCAc > 2:2888328/1‑93 (MQ=255)
cacaAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCAc > 1:427480/1‑93 (MQ=255)
cacaAAGAAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCAc > 2:4610431/1‑93 (MQ=255)
acaAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACg > 2:2661312/1‑93 (MQ=255)
acaAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACg > 1:1081675/1‑93 (MQ=255)
caAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGc < 2:1390067/93‑1 (MQ=255)
aaccAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTg < 1:46928/90‑1 (MQ=255)
aaGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTg > 2:2319058/1‑93 (MQ=255)
aaGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTg > 2:3219221/1‑93 (MQ=255)
aGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGa > 2:4295991/1‑93 (MQ=255)
aGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGa < 1:1129320/93‑1 (MQ=255)
aGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGa < 2:3137712/93‑1 (MQ=255)
gCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGAc < 1:712598/93‑1 (MQ=255)
gCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGAc > 1:3573765/1‑93 (MQ=255)
cAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACg < 1:4187325/93‑1 (MQ=255)
aaTCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGc > 2:2792585/1‑93 (MQ=255)
aaTCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGc > 2:2099947/1‑93 (MQ=255)
tCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAg > 1:3753687/1‑93 (MQ=255)
tCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAg > 2:476809/1‑93 (MQ=255)
cTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAgg < 2:3252191/93‑1 (MQ=255)
cTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAgg < 1:3671085/93‑1 (MQ=255)
tttATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGt < 1:3125447/93‑1 (MQ=255)
tttATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGt < 2:2175216/93‑1 (MQ=255)
ttATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTg < 1:73042/93‑1 (MQ=255)
tataCATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGc < 1:1011735/93‑1 (MQ=255)
tataCATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGc > 2:3312975/1‑93 (MQ=255)
ataCATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCt < 1:4634791/93‑1 (MQ=255)
taCATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTg > 1:4655220/1‑93 (MQ=255)
taCATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTg > 2:3131654/1‑93 (MQ=255)
aCATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGa > 2:4021627/1‑93 (MQ=255)
aTCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGata < 1:863827/93‑1 (MQ=255)
tCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTTACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGatat > 1:2193170/1‑93 (MQ=255)
tCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGatat < 2:2968928/93‑1 (MQ=255)
cGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATc < 2:309403/93‑1 (MQ=255)
cAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCa < 2:3811178/93‑1 (MQ=255)
aGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCAt < 2:275620/93‑1 (MQ=255)
gTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATc < 1:3608799/93‑1 (MQ=255)
gTCGCTGCCAAGACAGTTGTCGCTCGTGGTGGCGATCAGCGGGCACGCGTCTGGATCGTCCGCCACGGCGACATAGGCGCTGATATCTccctg > 2:4615371/1‑90 (MQ=255)
cGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGa < 2:2199811/93‑1 (MQ=255)
gCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGAc < 2:2007826/93‑1 (MQ=255)
cTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACt > 2:4564613/1‑93 (MQ=255)
cTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACt < 1:158057/93‑1 (MQ=255)
tGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTg > 1:4471192/1‑93 (MQ=255)
tGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTg < 2:498115/93‑1 (MQ=255)
tGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTg < 2:3998312/93‑1 (MQ=255)
gCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGt < 1:2322430/93‑1 (MQ=255)
ccAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGtt < 1:4231161/93‑1 (MQ=255)
cAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGTCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGttt < 1:723589/93‑1 (MQ=255)
cAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGttt < 2:3440698/93‑1 (MQ=255)
cAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGttt < 1:3597032/93‑1 (MQ=255)
aGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGa > 2:3903215/1‑93 (MQ=255)
gACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGAt < 2:499272/93‑1 (MQ=255)
aCAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGAtt > 1:2895969/1‑93 (MQ=255)
aCAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGCTTTAtt > 2:1024747/1‑93 (MQ=255)
aGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAg < 1:1982427/93‑1 (MQ=255)
gTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGa < 1:4012418/93‑1 (MQ=255)
gTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGa > 1:2453014/1‑93 (MQ=255)
gTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGa > 1:3504599/1‑93 (MQ=255)
ttGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGGGCTGATATCACCATCGACTGTTTGATTAGAc > 2:1789934/1‑93 (MQ=255)
tGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGAcc > 1:280813/1‑93 (MQ=255)
gTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCa < 1:2688467/93‑1 (MQ=255)
tCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCAg < 1:2087814/93‑1 (MQ=255)
|
CCACCACATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGTTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCAG > NC_000913/1890677‑1890855
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCACATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGTTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCAGGAG > NC_000913/1890679‑1890858
|
ACCACATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGC > SRR4302535.3192867/1‑94 (MQ=60)
CCACATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCT < SRR4302535.3200229/94‑1 (MQ=60)
CACATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTG > SRR4302535.3995680/1‑94 (MQ=60)
CATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGT > SRR4302535.2459456/1‑94 (MQ=60)
ATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTG > SRR4302535.681145/1‑94 (MQ=60)
ATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTG > SRR4302535.3884179/1‑94 (MQ=60)
TCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGA > SRR4302535.4640653/1‑94 (MQ=60)
GGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACC > SRR4302535.447295/1‑94 (MQ=60)
GCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCA > SRR4302535.3789624/1‑94 (MQ=60)
GTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGC > SRR4302535.1032347/1‑94 (MQ=60)
GTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGC > SRR4302535.2597496/1‑94 (MQ=60)
CATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGC > SRR4302535.3018551/1‑94 (MQ=60)
CATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGC < SRR4302535.2170228/94‑1 (MQ=60)
CATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGC > SRR4302535.2800769/1‑94 (MQ=60)
ATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCC > SRR4302535.1733716/1‑94 (MQ=60)
ATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCC > SRR4302535.2869407/1‑94 (MQ=60)
CGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCAC > SRR4302535.1462397/1‑94 (MQ=60)
CGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCAC > SRR4302535.2871472/1‑94 (MQ=60)
CGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCAC < SRR4302535.1064202/94‑1 (MQ=60)
TTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCC < SRR4302535.1667746/94‑1 (MQ=60)
TTTTACGTGCTTTGACCCCAGAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTG < SRR4302535.3121122/94‑1 (MQ=60)
TTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTG < SRR4302535.1420504/94‑1 (MQ=60)
TTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTG < SRR4302535.2100414/94‑1 (MQ=60)
CGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAAT > SRR4302535.4527444/1‑94 (MQ=60)
GCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTT > SRR4302535.2869614/1‑94 (MQ=60)
ACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCA > SRR4302535.2334247/1‑94 (MQ=60)
CCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCAC > SRR4302535.430453/1‑94 (MQ=60)
CACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACG > SRR4302535.411486/1‑94 (MQ=60)
CACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACG > SRR4302535.1089366/1‑94 (MQ=60)
ACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGC > SRR4302535.3713683/1‑94 (MQ=60)
AACCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGA < SRR4302535.47283/94‑1 (MQ=60)
AGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGAC < SRR4302535.1137382/94‑1 (MQ=60)
AGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGAC > SRR4302535.3598545/1‑94 (MQ=60)
GCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACG < SRR4302535.717601/94‑1 (MQ=60)
CAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGC < SRR4302535.4215982/94‑1 (MQ=60)
ATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAG > SRR4302535.3779660/1‑94 (MQ=60)
CTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGT < SRR4302535.3696509/94‑1 (MQ=60)
CTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGG > SRR4302535.2606259/1‑94 (MQ=60)
TTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTG < SRR4302535.3147216/94‑1 (MQ=60)
TTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGC < SRR4302535.73571/94‑1 (MQ=60)
TATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCT < SRR4302535.1018924/94‑1 (MQ=60)
TATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCT < SRR4302535.2309552/94‑1 (MQ=60)
ATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTG < SRR4302535.4666228/94‑1 (MQ=60)
ATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTG > SRR4302535.4686727/1‑94 (MQ=60)
ATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTTACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATAT > SRR4302535.2208799/1‑94 (MQ=60)
ATCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATAT < SRR4302535.869931/94‑1 (MQ=60)
TCGGGCAGTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATC < SRR4302535.1405140/94‑1 (MQ=60)
GTCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCG < SRR4302535.3633826/94‑1 (MQ=60)
TCGCTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGA > SRR4302535.685540/1‑94 (MQ=60)
CTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTG < SRR4302535.159173/94‑1 (MQ=60)
CTGCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTG > SRR4302535.4501874/1‑94 (MQ=60)
GCCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTT < SRR4302535.2339049/94‑1 (MQ=60)
CCAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTT < SRR4302535.4260115/94‑1 (MQ=60)
CAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGTCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTG < SRR4302535.728668/94‑1 (MQ=60)
CAAGACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTG < SRR4302535.3621993/94‑1 (MQ=60)
GACAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATT > SRR4302535.2916450/1‑94 (MQ=60)
CAGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAG < SRR4302535.1765472/94‑1 (MQ=60)
AGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGA > SRR4302535.2470693/1‑94 (MQ=60)
AGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGA > SRR4302535.3528954/1‑94 (MQ=60)
AGTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGA < SRR4302535.1996701/94‑1 (MQ=60)
GTTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGAC < SRR4302535.4039866/94‑1 (MQ=60)
TTGTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACC > SRR4302535.282771/1‑94 (MQ=60)
GTCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCAG < SRR4302535.2707678/94‑1 (MQ=60)
TCGCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCAGG < SRR4302535.2102853/94‑1 (MQ=60)
GCTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCAGGAG < SRR4302535.91377/94‑1 (MQ=60)
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ACCACATCGGCGTCCATCGCTTTTTTACGTGCTTTGACCACAAAGCAATCTTTATACATCGGGCAGTCGCTGCCAAGACAGTTGTCGTTGGTGCTGGTGACCAGCGGCCACGCCTGTGAATCTTCCGCCACGCTGACGCAGGTGCTGATATCACCATCGACTGTTTGATTAGACCAGGAG > NC_000913/1890679‑1890858
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
