Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,908,347 |
T→C |
G16G (GGT→GGC) |
b1828 → |
putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,908,347 | 0 | T | C | 100.0%
| 408.8
/ NA
| 131 | G16G (GGT→GGC) | b1828 | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (78/53); total (78/53) |
Only 100 of 134 total aligned reads displayed.
ATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGTGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCT > NC_000913/1908258‑1908436
|
aTCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGcgcg > 1:1559887/1‑93 (MQ=255)
cATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGat < 1:4631129/93‑1 (MQ=255)
aTACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGata > 1:3918252/1‑93 (MQ=255)
tACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGatat < 1:3708766/93‑1 (MQ=255)
tACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGatat > 1:3148364/1‑93 (MQ=255)
ccccTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTa < 2:568935/93‑1 (MQ=255)
cccTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTaa > 1:4066798/1‑93 (MQ=255)
ccTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAAc > 2:2694898/1‑93 (MQ=255)
ccTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAAc > 1:2158789/1‑93 (MQ=255)
cTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAAcc > 2:3496174/1‑93 (MQ=255)
tGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCa > 2:2952034/1‑93 (MQ=255)
tGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCa < 2:4165694/93‑1 (MQ=255)
tGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCa < 1:1612741/93‑1 (MQ=255)
gTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAt < 1:42264/93‑1 (MQ=255)
gTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAt > 2:512731/1‑93 (MQ=255)
gTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAt > 1:2578769/1‑93 (MQ=255)
ttGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAtt < 1:4378195/93‑1 (MQ=255)
tGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtg < 1:4086924/93‑1 (MQ=255)
gATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtgt > 1:2102943/1‑93 (MQ=255)
attattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtgtg > 1:1832423/1‑93 (MQ=255)
attattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtgtg > 2:316739/1‑93 (MQ=255)
ttattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGa < 1:3456583/93‑1 (MQ=255)
ttattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGa < 2:2631664/93‑1 (MQ=255)
ttattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGa > 2:69636/1‑93 (MQ=255)
attCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGAtt < 2:3491139/93‑1 (MQ=255)
attCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGAtt < 2:644625/93‑1 (MQ=255)
attCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGAtt > 1:1650743/1‑93 (MQ=255)
attCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGAtt > 1:4628028/1‑93 (MQ=255)
attCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGAtt > 1:3948244/1‑93 (MQ=255)
ttCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTg < 1:1323896/93‑1 (MQ=255)
tCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTgg > 2:2699124/1‑93 (MQ=255)
tCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTgg > 1:300882/1‑93 (MQ=255)
ccAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTAt > 1:2462465/1‑93 (MQ=255)
cAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTAtt > 1:4130990/1‑93 (MQ=255)
aaGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTc < 2:4322903/93‑1 (MQ=255)
aaGATATAAAATGCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTc < 1:1008191/93‑1 (MQ=255)
aGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCg > 1:2802809/1‑93 (MQ=255)
aatatAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGa < 2:3893440/92‑1 (MQ=255)
atatAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGAt < 1:1498146/93‑1 (MQ=255)
atatAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGAt < 1:1941907/93‑1 (MQ=255)
tataAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATg < 2:3015093/93‑1 (MQ=255)
tataAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATg < 2:2084324/93‑1 (MQ=255)
ataAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATgg > 2:1967669/1‑93 (MQ=255)
ataAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATgg > 2:1501231/1‑93 (MQ=255)
aaaaTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGcc > 2:4357763/1‑93 (MQ=255)
aaTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGt > 2:3048917/1‑93 (MQ=255)
aaTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGt < 2:783348/93‑1 (MQ=255)
aaTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGt < 2:1593866/93‑1 (MQ=255)
aaTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGt > 2:3448491/1‑93 (MQ=255)
aTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTc < 1:4513939/93‑1 (MQ=255)
aTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTc > 1:3155409/1‑93 (MQ=255)
aTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTc > 1:174015/1‑93 (MQ=255)
ttCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGACGTcc > 2:3576831/1‑93 (MQ=255)
tCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCt > 1:1059239/1‑93 (MQ=255)
tCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCt > 2:471302/1‑93 (MQ=255)
ccTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCtt < 2:2242224/93‑1 (MQ=255)
cTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTg > 1:4360130/1‑93 (MQ=255)
cTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTg > 2:3628859/1‑93 (MQ=255)
tATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGa > 1:414891/1‑93 (MQ=255)
tATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGa > 1:4045066/1‑93 (MQ=255)
cAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGgcg > 2:2179921/1‑93 (MQ=255)
cAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATCGGTATTTCGATGGCCGTCCTTGACGgcg > 2:1310379/1‑93 (MQ=255)
aaaaGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGgcgc > 1:4141438/1‑93 (MQ=255)
aaGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCaa < 2:2238051/93‑1 (MQ=255)
aaGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCaa > 2:2245501/1‑93 (MQ=255)
aaGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCaa > 2:4171202/1‑93 (MQ=255)
aGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAAt < 2:1000871/93‑1 (MQ=255)
ttCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCg > 1:573717/1‑93 (MQ=255)
aGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCa > 2:93877/1‑93 (MQ=255)
ggCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCaa > 1:1026527/1‑93 (MQ=255)
ggCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCaa > 2:3249318/1‑93 (MQ=255)
ggCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCaa < 1:69345/93‑1 (MQ=255)
gCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAc > 1:3990386/1‑93 (MQ=255)
cGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGc > 1:604074/1‑93 (MQ=255)
ggCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGcc < 2:3337431/93‑1 (MQ=255)
cTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAGTCGCCAACGTCGCCCTg > 1:339104/1‑93 (MQ=255)
tGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGACGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGc > 2:1689633/1‑93 (MQ=255)
cATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaa > 2:3144305/1‑93 (MQ=255)
aTTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaac < 1:3721768/93‑1 (MQ=255)
aTTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaac < 1:3814074/93‑1 (MQ=255)
aTTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCACCAACGTCGCCCTGCcatc > 1:316573/1‑91 (MQ=255)
tGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaacaa < 1:1380225/93‑1 (MQ=255)
tGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaacaa < 2:2341647/93‑1 (MQ=255)
gCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAAt < 2:37592/93‑1 (MQ=255)
gCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAAt < 1:818912/93‑1 (MQ=255)
cccAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCg > 2:3530325/1‑93 (MQ=255)
cAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGcc > 1:2815943/1‑93 (MQ=255)
cAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGcc > 2:2348531/1‑93 (MQ=255)
gCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCAc > 2:3263429/1‑93 (MQ=255)
gCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCAc < 1:2417868/93‑1 (MQ=255)
gATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACgg < 2:2950023/93‑1 (MQ=255)
gATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACgg > 1:723673/1‑93 (MQ=255)
gATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACgg > 2:116269/1‑93 (MQ=255)
gATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGACGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCCCgg > 1:3346533/1‑93 (MQ=255)
aTACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGa > 2:4320982/1‑93 (MQ=255)
tACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGAc > 2:3743994/1‑93 (MQ=255)
tACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGAc < 2:4221313/93‑1 (MQ=255)
tACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGAc < 2:2468995/93‑1 (MQ=255)
aCGGCGCGATATTAACCATTGTGATTGGTATTTCAATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGAcc < 2:871316/93‑1 (MQ=255)
cGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCt < 1:2179520/93‑1 (MQ=255)
|
ATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGTGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCT > NC_000913/1908258‑1908436
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAGAATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGTGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTTCAT > NC_000913/1908254‑1908440
|
TAGAATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGC < SRR4302535.4435706/94‑1 (MQ=60)
AAATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGC < SRR4302535.2799634/94‑1 (MQ=60)
AATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCG > SRR4302535.1571129/1‑94 (MQ=60)
CATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATA > SRR4302535.2012905/1‑94 (MQ=60)
CATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATA < SRR4302535.4662552/94‑1 (MQ=60)
CATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATA > SRR4302535.3095944/1‑94 (MQ=60)
CATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATA > SRR4302535.3945056/1‑94 (MQ=60)
ATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATAT > SRR4302535.3170252/1‑94 (MQ=60)
TACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATT < SRR4302535.3734445/94‑1 (MQ=60)
CCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAA > SRR4302535.4094625/1‑94 (MQ=60)
CCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAAC > SRR4302535.2174299/1‑94 (MQ=60)
TGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAT < SRR4302535.1624364/94‑1 (MQ=60)
TGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAT > SRR4302535.2597297/1‑94 (MQ=60)
GTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATT < SRR4302535.42587/94‑1 (MQ=60)
TTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTG < SRR4302535.4408151/94‑1 (MQ=60)
TGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGT > SRR4302535.2118110/1‑94 (MQ=60)
TGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGT < SRR4302535.4114887/94‑1 (MQ=60)
GATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTG > SRR4302535.1845646/1‑94 (MQ=60)
TTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGAT > SRR4302535.3868351/1‑94 (MQ=60)
TTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGAT < SRR4302535.3480610/94‑1 (MQ=60)
TATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATT > SRR4302535.4659442/1‑94 (MQ=60)
TATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATT > SRR4302535.3975199/1‑94 (MQ=60)
TATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATT > SRR4302535.1662680/1‑94 (MQ=60)
TTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGG < SRR4302535.1333343/94‑1 (MQ=60)
TTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGG > SRR4302535.302977/1‑94 (MQ=60)
ACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTAT > SRR4302535.2480218/1‑94 (MQ=60)
CCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATT > SRR4302535.4159254/1‑94 (MQ=60)
AAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCG > SRR4302535.2822743/1‑94 (MQ=60)
AAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCG < SRR4302535.2407266/94‑1 (MQ=60)
AAGATATAAAATGCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCG < SRR4302535.1015354/94‑1 (MQ=60)
GATATAAAATTCCTATGCCAAAAGTTCAGGCGGAGGGCCTGCCTTTGCCCAGGCGTAACGGCGCGATTTTAACCATTGTGTTTGGTTTTTCGTT > SRR4302535.3435904/1‑94 (MQ=28)
ATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATG < SRR4302535.1955894/94‑1 (MQ=60)
ATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATG < SRR4302535.1508920/94‑1 (MQ=60)
TATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGG < SRR4302535.715068/94‑1 (MQ=60)
TAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCC > SRR4302535.4031005/1‑94 (MQ=60)
AATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTC > SRR4302535.3177325/1‑94 (MQ=60)
AATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTC > SRR4302535.175217/1‑94 (MQ=60)
ATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCC < SRR4302535.4544893/94‑1 (MQ=60)
TTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCT > SRR4302535.1066783/1‑94 (MQ=60)
CCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTG > SRR4302535.4389972/1‑94 (MQ=60)
CTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGA > SRR4302535.417804/1‑94 (MQ=60)
CTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGA > SRR4302535.417803/1‑94 (MQ=60)
CTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGA > SRR4302535.4072760/1‑94 (MQ=60)
CTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCC‑TGAC > SRR4302535.413916/1‑94 (MQ=60)
TGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGG > SRR4302535.3732665/1‑94 (MQ=60)
CAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGC > SRR4302535.4169797/1‑94 (MQ=60)
AAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAA > SRR4302535.110788/1‑94 (MQ=60)
GTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCG < SRR4302535.873883/94‑1 (MQ=60)
GTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCG > SRR4302535.577744/1‑94 (MQ=60)
CAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGCCGGCGCAATagaca > SRR4302535.2815668/1‑89 (MQ=60)
AGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAA > SRR4302535.1033817/1‑94 (MQ=60)
AGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAA > SRR4302535.1726692/1‑94 (MQ=60)
GGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAC > SRR4302535.4017679/1‑94 (MQ=60)
GGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAC < SRR4302535.69855/94‑1 (MQ=60)
ACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGC > SRR4302535.608302/1‑94 (MQ=60)
CCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAGTCGCCAACGTCGCCCTG > SRR4302535.341454/1‑94 (MQ=60)
GCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGTAATCGCCAACGTCGCCCTGCCA < SRR4302535.4680279/94‑1 (MQ=60)
CATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCACCAACGTCGCCCTGCCATC > SRR4302535.318771/1‑94 (MQ=60)
ATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACA < SRR4302535.3840392/94‑1 (MQ=60)
ATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACA < SRR4302535.3747552/94‑1 (MQ=60)
TGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAAT < SRR4302535.1390068/94‑1 (MQ=60)
GCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATC < SRR4302535.824658/94‑1 (MQ=60)
CCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCC > SRR4302535.2835946/1‑94 (MQ=60)
CGCGATACGGCGCGATATTAACCATTGTGATTGTTATTTCGATGCCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCAC < SRR4302535.2731801/94‑1 (MQ=60)
AGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCAC < SRR4302535.4481400/94‑1 (MQ=60)
GCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACG < SRR4302535.2435272/94‑1 (MQ=60)
CGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGG > SRR4302535.3251589/1‑94 (MQ=60)
CGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGG > SRR4302535.728754/1‑94 (MQ=60)
CGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGACGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCCCGG > SRR4302535.3369847/1‑94 (MQ=60)
GATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGA < SRR4302535.1531218/94‑1 (MQ=60)
CGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTT < SRR4302535.2195080/94‑1 (MQ=60)
CGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTTCAT > SRR4302535.1681923/1‑94 (MQ=60)
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TAGAATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGTGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTTCAT > NC_000913/1908254‑1908440
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
