Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,908,347	T→C	G16G (GGT→GGC)	b1828 →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,908,347	0	T	C	99.5%	650.5 / NA	208	G16G (GGT→GGC)	b1828	putative transport protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (126/81); minor base A (1/0); total (127/81)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 216 total aligned reads displayed.

AATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGTGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCT  >  NC_000913/1908257‑1908436

aaTCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGgcgc                                                                                         <  2:1986042/93‑1 (MQ=255)

aaTCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGgcgc                                                                                         <  2:3565740/93‑1 (MQ=255)

  tCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGa                                                                                       >  2:5297151/1‑93 (MQ=255)

  tCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGa                                                                                       <  1:2983608/93‑1 (MQ=255)

   cATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGat                                                                                      >  1:3427323/1‑93 (MQ=255)

    aTACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGata                                                                                     <  2:2672072/93‑1 (MQ=255)

    aTACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGata                                                                                     <  1:4163361/93‑1 (MQ=255)

     tACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGatat                                                                                    >  2:3205394/1‑93 (MQ=255)

         ccTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAAc                                                                                <  2:4214727/93‑1 (MQ=255)

          cTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAAcc                                                                               >  1:1167760/1‑93 (MQ=255)

           tGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCa                                                                              <  1:664662/93‑1 (MQ=255)

           tGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCa                                                                              >  2:295354/1‑93 (MQ=255)

           tGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCa                                                                              >  2:3343157/1‑93 (MQ=255)

              tGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtg                                                                           <  2:6343470/93‑1 (MQ=255)

              tGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtg                                                                           >  1:6015634/1‑93 (MQ=255)

               gATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtgt                                                                          <  1:2736389/93‑1 (MQ=255)

               gATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtgt                                                                          >  1:5947351/1‑93 (MQ=255)

                attattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtgtg                                                                         >  1:6105698/1‑93 (MQ=255)

                attattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATtgtg                                                                         <  2:2515575/93‑1 (MQ=255)

                 ttattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGa                                                                        >  2:1299992/1‑93 (MQ=255)

                  tattCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGAt                                                                       <  1:2129112/93‑1 (MQ=255)

                    ttCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTg                                                                     >  2:4772164/1‑93 (MQ=255)

                    ttCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTg                                                                     <  2:6131532/93‑1 (MQ=255)

                    ttCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTg                                                                     <  1:4284804/93‑1 (MQ=255)

                     tCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTgg                                                                    >  2:6824758/1‑93 (MQ=255)

                     tCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTgg                                                                    <  2:1848530/93‑1 (MQ=255)

                       aCCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTa                                                                  >  2:3783880/1‑93 (MQ=255)

                       aCCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTa                                                                  >  2:6179405/1‑93 (MQ=255)

                        ccAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTAt                                                                 >  2:3842014/1‑93 (MQ=255)

                        caaaaGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTAt                                                                 <  1:273244/91‑1 (MQ=255)

                         cAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTAtt                                                                >  1:7497852/1‑93 (MQ=255)

                          aaaGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTAttt                                                               <  1:4435754/93‑1 (MQ=255)

                          aaaGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTAttt                                                               >  1:3187570/1‑93 (MQ=255)

                          aaaGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGAGCGATATTAACCATTGTGATTGGTAttt                                                               >  1:5660795/1‑93 (MQ=255)

                            aGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCg                                                             <  2:1603175/93‑1 (MQ=255)

                            aGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCg                                                             >  1:5062445/1‑93 (MQ=255)

                             gATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGa                                                            >  1:113716/1‑93 (MQ=255)

                             gATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCACTGTGATTGGTATTTCGa                                                            >  2:7011445/1‑93 (MQ=255)

                             gATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGAGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGa                                                            <  1:3951964/93‑1 (MQ=255)

                              atatAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGAt                                                           <  2:4267730/93‑1 (MQ=255)

                               tataAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATg                                                          >  2:3268156/1‑93 (MQ=255)

                                  aaaaTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGcc                                                       >  1:851100/1‑93 (MQ=255)

                                  aaaaTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGcc                                                       >  1:1713331/1‑93 (MQ=255)

                                     aTTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTc                                                    <  2:7259408/93‑1 (MQ=255)

                                      ttCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTcc                                                   <  1:6509659/93‑1 (MQ=255)

                                       tCCTATGCCAAAAGTTCGGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCt                                                  >  2:7417286/1‑93 (MQ=255)

                                        ccTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCtt                                                 >  1:2109851/1‑93 (MQ=255)

                                        ccTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCtt                                                 <  1:1886236/93‑1 (MQ=255)

                                          tATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTgc                                               >  2:1928153/1‑92 (MQ=255)

                                          tATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGa                                               <  2:1124429/93‑1 (MQ=255)

                                           aTGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGAc                                              >  1:5473714/1‑93 (MQ=255)

                                           aTGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGAc                                              <  1:376699/93‑1 (MQ=255)

                                              ccAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGgc                                           >  1:957537/1‑93 (MQ=255)

                                               cAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGgcg                                          >  1:3736956/1‑93 (MQ=255)

                                               cAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGgcg                                          >  1:7298251/1‑93 (MQ=255)

                                                 aaaGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCa                                        >  2:2060858/1‑93 (MQ=255)

                                                   aGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAAt                                      <  1:1206997/93‑1 (MQ=255)

                                                   aGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAAt                                      <  2:5607078/93‑1 (MQ=255)

                                                   aGTTCAGGCCGACGGCCTGCAATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAAt                                      >  2:5497988/1‑93 (MQ=255)

                                                       cAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGcc                                  >  2:7662605/1‑93 (MQ=255)

                                                        aGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGGCGTCCTTGACGGCGCAATCGCCa                                 >  2:4366530/1‑93 (MQ=255)

                                                        aGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCa                                 >  1:5393715/1‑93 (MQ=255)

                                                        aGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCa                                 >  1:3522470/1‑93 (MQ=255)

                                                         ggCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCaa                                <  1:517083/93‑1 (MQ=255)

                                                         ggCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCaa                                <  2:1406621/93‑1 (MQ=255)

                                                         ggCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCaa                                >  1:5796043/1‑93 (MQ=255)

                                                         ggCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCaa                                <  1:6322469/93‑1 (MQ=255)

                                                          gCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAc                               >  2:6485522/1‑93 (MQ=255)

                                                          gCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAc                               >  1:2192965/1‑93 (MQ=255)

                                                            cGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGt                             >  2:3718932/1‑93 (MQ=255)

                                                            cGACGCCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATGGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGt                             <  2:2108790/93‑1 (MQ=255)

                                                             gACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTc                            >  2:7151782/1‑93 (MQ=255)

                                                             gACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTc                            >  1:2482500/1‑93 (MQ=255)

                                                             gACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTc                            >  2:487088/1‑93 (MQ=255)

                                                                ggCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGcc                         <  2:5540121/93‑1 (MQ=255)

                                                                ggCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGcc                         <  1:1548407/93‑1 (MQ=255)

                                                                 gCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGccc                        <  1:7878824/93‑1 (MQ=255)

                                                                   cTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTg                      >  1:4614903/1‑93 (MQ=255)

                                                                    tGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGc                     >  2:7061494/1‑93 (MQ=255)

                                                                    tGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGc                     >  2:3778281/1‑93 (MQ=255)

                                                                     gCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGcc                    >  1:2319489/1‑93 (MQ=255)

                                                                     gCCATTGCCCCAGCGAGACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGcc                    <  1:4218952/93‑1 (MQ=255)

                                                                       cATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaa                  >  2:4498991/1‑93 (MQ=255)

                                                                        aTTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaac                 >  2:3119670/1‑93 (MQ=255)

                                                                         ttGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaaca                >  1:6700881/1‑93 (MQ=255)

                                                                         ttGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaaca                >  1:5316480/1‑93 (MQ=255)

                                                                         ttGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaaca                >  2:5689991/1‑93 (MQ=255)

                                                                          tGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCcaacaa               >  1:4055549/1‑93 (MQ=255)

                                                                           gCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAAt              >  2:4931327/1‑93 (MQ=255)

                                                                              ccAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGc           >  2:5152278/1‑93 (MQ=255)

                                                                               cAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGcc          >  2:6531830/1‑93 (MQ=255)

                                                                               cAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGACGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGcc          >  2:1445671/1‑93 (MQ=255)

                                                                                aGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCa         <  2:4055548/93‑1 (MQ=255)

                                                                                   gATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACgg      <  1:1418677/93‑1 (MQ=255)

                                                                                   gATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACgg      <  1:6117838/93‑1 (MQ=255)

                                                                                   gATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACgg      >  1:7519117/1‑93 (MQ=255)

                                                                                    aTACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACGATCGCCACGGa     <  1:7094588/93‑1 (MQ=255)

                                                                                    aTACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGa     <  1:3133489/93‑1 (MQ=255)

                                                                                    aTACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGa     >  1:7222311/1‑93 (MQ=255)

                                                                                      aCGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGAcc   <  1:2044437/93‑1 (MQ=255)

AATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGTGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCT  >  NC_000913/1908257‑1908436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGAATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGTGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTTCAT  >  NC_000913/1908255‑1908440

AGAATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCG                                                                                              >  SRR4302543.7161324/1‑94 (MQ=60)

    TCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGAT                                                                                          >  SRR4302543.3457992/1‑94 (MQ=60)

    TCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGAT                                                                                          <  SRR4302543.117658/94‑1 (MQ=60)

    TCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGAT                                                                                          <  SRR4302543.3010701/94‑1 (MQ=60)

     CATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGAGA                                                                                         >  SRR4302543.423406/1‑94 (MQ=60)

      ATCCCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATAT                                                                                        <  SRR4302543.6859656/94‑1 (MQ=60)

      ATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATAT                                                                                        <  SRR4302543.4201055/94‑1 (MQ=60)

      ATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATAT                                                                                        >  SRR4302543.6306176/1‑94 (MQ=60)

      ATACCCATGTTGATTATTCAACAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATAT                                                                                        <  SRR4302543.6750517/94‑1 (MQ=60)

          CCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAAC                                                                                    <  SRR4302543.5833432/94‑1 (MQ=60)

           CCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACC                                                                                   >  SRR4302543.1178370/1‑94 (MQ=60)

           CCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACC                                                                                   <  SRR4302543.2167507/94‑1 (MQ=60)

            CTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCA                                                                                  >  SRR4302543.3953400/1‑94 (MQ=60)

            CTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCA                                                                                  >  SRR4302543.4412921/1‑94 (MQ=60)

             TGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAT                                                                                 <  SRR4302543.805515/94‑1 (MQ=60)

             TGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAT                                                                                 <  SRR4302543.670775/94‑1 (MQ=60)

             TGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCAT                                                                                 >  SRR4302543.6548023/1‑94 (MQ=60)

             TGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATAAACCAT                                                                                 >  SRR4302543.1005303/1‑94 (MQ=60)

              GTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATT                                                                                >  SRR4302543.4064826/1‑94 (MQ=60)

              GTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATT                                                                                <  SRR4302543.730456/94‑1 (MQ=60)

               TTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTG                                                                               >  SRR4302543.6071259/1‑94 (MQ=60)

                TGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGT                                                                              >  SRR4302543.5097698/1‑94 (MQ=60)

                TGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGT                                                                              <  SRR4302543.2518406/94‑1 (MQ=60)

                TGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGT                                                                              >  SRR4302543.6001784/1‑94 (MQ=60)

                 GATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTG                                                                             <  SRR4302543.2761286/94‑1 (MQ=60)

                 GATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTG                                                                             >  SRR4302543.6163545/1‑94 (MQ=60)

                  ATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGA                                                                            >  SRR4302543.6951104/1‑94 (MQ=60)

                    TATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATT                                                                          <  SRR4302543.2148170/94‑1 (MQ=60)

                      TTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGG                                                                        <  SRR4302543.4323744/94‑1 (MQ=60)

                      TTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGG                                                                        <  SRR4302543.4323743/94‑1 (MQ=60)

                          CCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATT                                                                    <  SRR4302543.6046297/94‑1 (MQ=60)

                          CCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATT                                                                    >  SRR4302543.7569559/1‑94 (MQ=60)

                          CAAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATT                                                                    <  SRR4302543.275644/94‑1 (MQ=60)

                           CAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTT                                                                   >  SRR4302543.2864868/1‑94 (MQ=60)

                           CAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTT                                                                   >  SRR4302543.3216311/1‑94 (MQ=60)

                           CAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGAGCGATATTAACCATTGTGATTGGTATTT                                                                   >  SRR4302543.5712427/1‑94 (MQ=60)

                            AAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTC                                                                  >  SRR4302543.6082931/1‑94 (MQ=60)

                            AAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTC                                                                  <  SRR4302543.4475927/94‑1 (MQ=60)

                             AAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCG                                                                 >  SRR4302543.5108431/1‑94 (MQ=60)

                              AGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGA                                                                >  SRR4302543.114751/1‑94 (MQ=60)

                               GATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGAT                                                               >  SRR4302543.1537159/1‑94 (MQ=60)

                               GATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGAGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGAT                                                               <  SRR4302543.3986927/94‑1 (MQ=60)

                                ATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATG                                                              <  SRR4302543.1951984/94‑1 (MQ=60)

                                 TATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGG                                                             <  SRR4302543.4215914/94‑1 (MQ=60)

                                  ATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGC                                                            >  SRR4302543.1921876/1‑94 (MQ=60)

                                   TAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCC                                                           >  SRR4302543.858652/1‑94 (MQ=60)

                                   TAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCC                                                           >  SRR4302543.858651/1‑94 (MQ=60)

                                   TAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCC                                                           >  SRR4302543.1728649/1‑94 (MQ=60)

                                        TTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCT                                                      <  SRR4302543.6570980/94‑1 (MQ=60)

                                         TCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTT                                                     >  SRR4302543.2128735/1‑94 (MQ=60)

                                         TCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTT                                                     <  SRR4302543.1790842/94‑1 (MQ=60)

                                          CCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTG                                                    <  SRR4302543.1903190/94‑1 (MQ=60)

                                          CCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTG                                                    >  SRR4302543.275885/1‑94 (MQ=60)

                                           CTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGA                                                   >  SRR4302543.5862377/1‑94 (MQ=60)

                                            TATGCCAAACGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGCTACGGCGCGATATTACCCATTGTACTTGGTATTTCGATGGCCTTCCTTGAC                                                  >  SRR4302543.5523311/1‑94 (MQ=60)

                                            TATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGAC                                                  >  SRR4302543.5523312/1‑94 (MQ=60)

                                             ATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACG                                                 <  SRR4302543.3309264/94‑1 (MQ=60)

                                             ATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACG                                                 <  SRR4302543.380171/94‑1 (MQ=60)

                                               GCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGC                                               >  SRR4302543.965927/1‑94 (MQ=60)

                                                CCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCG                                              >  SRR4302543.3769828/1‑94 (MQ=60)

                                                CCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCG                                              >  SRR4302543.7368656/1‑94 (MQ=60)

                                                 CAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGC                                             >  SRR4302543.918698/1‑94 (MQ=60)

                                                 CAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGAATTTCGATGGCCGTCCTTGACGGCGC                                             >  SRR4302543.5377630/1‑94 (MQ=60)

                                                  AAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCA                                            >  SRR4302543.7601349/1‑94 (MQ=60)

                                                  AAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCA                                            >  SRR4302543.1602416/1‑94 (MQ=60)

                                                  AAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCA                                            <  SRR4302543.3477352/94‑1 (MQ=60)

                                                     AGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATC                                         <  SRR4302543.3789360/94‑1 (MQ=60)

                                                     AGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATC                                         <  SRR4302543.5679014/94‑1 (MQ=60)

                                                     AGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATC                                         <  SRR4302543.2573698/94‑1 (MQ=60)

                                                     AGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATC                                         <  SRR4302543.1217856/94‑1 (MQ=60)

                                                     AGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGACTGGTATTTCGATCGCCGTCCTTGACGGCGCAATC                                         >  SRR4302543.1184444/1‑94 (MQ=60)

                                                      GTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGACGTCCTTGACGGCGCAATCG                                        >  SRR4302543.5349127/1‑94 (MQ=60)

                                                         CAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCA                                     >  SRR4302543.3553892/1‑94 (MQ=60)

                                                         CAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCA                                     >  SRR4302543.5442756/1‑94 (MQ=60)

                                                          AGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAA                                    >  SRR4302543.5848773/1‑94 (MQ=60)

                                                          AGGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAA                                    >  SRR4302543.2133916/1‑94 (MQ=60)

                                                           GGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAC                                   >  SRR4302543.2212663/1‑94 (MQ=60)

                                                           GGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAC                                   >  SRR4302543.7509958/1‑94 (MQ=60)

                                                           GGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAC                                   <  SRR4302543.521882/94‑1 (MQ=60)

                                                           GGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAC                                   <  SRR4302543.6381921/94‑1 (MQ=60)

                                                           GGCCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAAC                                   <  SRR4302543.2242073/94‑1 (MQ=60)

                                                             CCGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGT                                 >  SRR4302543.7230469/1‑94 (MQ=60)

                                                              CGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTC                                <  SRR4302543.5430851/94‑1 (MQ=60)

                                                              CGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTC                                <  SRR4302543.1415392/94‑1 (MQ=60)

                                                              CGACGGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTC                                >  SRR4302543.2504976/1‑94 (MQ=60)

                                                                  GGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCC                            >  SRR4302543.7576352/1‑94 (MQ=60)

                                                                  GGCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCC                            <  SRR4302543.1562259/94‑1 (MQ=60)

                                                                  GGCCCGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCC                            >  SRR4302543.546711/1‑94 (MQ=60)

                                                                   GCCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCT                           <  SRR4302543.7952983/94‑1 (MQ=60)

                                                                    CCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTG                          <  SRR4302543.2106053/94‑1 (MQ=60)

                                                                    CCTGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTG                          >  SRR4302543.4656820/1‑94 (MQ=60)

                                                                      TGCCATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCC                        >  SRR4302543.2340575/1‑94 (MQ=60)

                                                                       GCCATTGCCCCAGCGAGACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCA                       <  SRR4302543.4257200/94‑1 (MQ=60)

                                                                         CATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAAC                     >  SRR4302543.6647774/1‑94 (MQ=60)

                                                                          ATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACA                    >  SRR4302543.5364515/1‑94 (MQ=60)

                                                                          ATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACA                    >  SRR4302543.6764118/1‑94 (MQ=60)

                                                                          ATTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGACGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACA                    >  SRR4302543.4142470/1‑94 (MQ=60)

                                                                           TTGCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAA                   >  SRR4302543.4091852/1‑94 (MQ=60)

                                                                             GCCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATC                 <  SRR4302543.4486901/94‑1 (MQ=60)

                                                                              CCCCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCG                <  SRR4302543.5122642/94‑1 (MQ=60)

                                                                                CCAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGCCGGCGCAATCGCCAACGCCGCCCCGCCCACAATCGCC              >  SRR4302543.2350686/1‑94 (MQ=60)

                                                                                 CAGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCA             >  SRR4302543.3516340/1‑94 (MQ=60)

                                                                                  AGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCAC            <  SRR4302543.3209427/94‑1 (MQ=60)

                                                                                  AGCGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCAC            <  SRR4302543.3721847/94‑1 (MQ=60)

                                                                                    CGATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGG          >  SRR4302543.7590892/1‑94 (MQ=60)

                                                                                     GATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGA         <  SRR4302543.6175789/94‑1 (MQ=60)

                                                                                     GATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGA         >  SRR4302543.302989/1‑94 (MQ=60)

                                                                                     GATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGA         >  SRR4302543.7292301/1‑94 (MQ=60)

                                                                                     GATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGA         <  SRR4302543.1431520/94‑1 (MQ=60)

                                                                                     GATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGA         <  SRR4302543.6175788/94‑1 (MQ=60)

                                                                                      ATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACGATCGCCACGGAC        <  SRR4302543.7163482/94‑1 (MQ=60)

                                                                                      ATACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGAC        <  SRR4302543.3161671/94‑1 (MQ=60)

                                                                                       TACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACC       <  SRR4302543.6143229/94‑1 (MQ=60)

                                                                                        ACGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCT      <  SRR4302543.2062766/94‑1 (MQ=60)

                                                                                         CGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTT     >  SRR4302543.3451710/1‑94 (MQ=60)

                                                                                         CGGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTT     >  SRR4302543.3451708/1‑94 (MQ=60)

                                                                                          GGCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTTC    <  SRR4302543.6375572/94‑1 (MQ=60)

                                                                                           GCGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTTCA   <  SRR4302543.5579224/94‑1 (MQ=60)

                                                                                            CGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTTCAT  <  SRR4302543.950358/94‑1 (MQ=60)

AGAATCATACCCCTGTTGATTATTCACCAAAGATATAAAATTCCTATGCCAAAAGTTCAGGCCGACGGCCTGCCATTGCCCCAGCGATACGGTGCGATATTAACCATTGTGATTGGTATTTCGATGGCCGTCCTTGACGGCGCAATCGCCAACGTCGCCCTGCCAACAATCGCCACGGACCTTCAT  >  NC_000913/1908255‑1908440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`