Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,923,720 |
T→C |
V86A (GTT→GCT) |
b1843 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,923,720 | 0 | T | C | 100.0%
| 376.0
/ NA
| 119 | V86A (GTT→GCT) | b1843 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (47/72); total (47/72) |
Only 100 of 122 total aligned reads displayed.
CCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCA > NC_000913/1923631‑1923808
|
ccTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGa > 1:4193844/1‑93 (MQ=255)
cTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGaa > 2:2740248/1‑93 (MQ=255)
ttCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAat > 1:3338668/1‑93 (MQ=255)
tCCTGCCCCCCCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAata < 2:3480959/93‑1 (MQ=255)
tCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAata < 1:2390359/93‑1 (MQ=255)
cTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAAtata > 2:3632832/1‑93 (MQ=255)
tGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATaa < 1:968847/93‑1 (MQ=255)
tGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATaa < 1:3574122/93‑1 (MQ=255)
gCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAAc < 1:4111549/93‑1 (MQ=255)
ccccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACg > 2:3006181/1‑93 (MQ=255)
ccccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACg < 1:4073869/93‑1 (MQ=255)
cccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGa > 2:4162008/1‑93 (MQ=255)
ccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAt < 2:4026737/93‑1 (MQ=255)
ccACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAt < 2:3409471/93‑1 (MQ=255)
cACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGaac > 1:473083/1‑91 (MQ=255)
cACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATc < 1:3608035/93‑1 (MQ=255)
cACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATc < 2:3948180/93‑1 (MQ=255)
cACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATc < 2:685091/93‑1 (MQ=255)
ccccGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCg < 2:2486328/92‑1 (MQ=255)
cccGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGc < 1:352721/93‑1 (MQ=255)
ccGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCt > 1:3128265/1‑93 (MQ=255)
cGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCtt < 2:4062023/93‑1 (MQ=255)
cGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCtt < 2:2702439/93‑1 (MQ=255)
cGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCtt > 1:943569/1‑93 (MQ=255)
gATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCttt > 2:3222557/1‑93 (MQ=255)
aTCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTa < 2:3657452/93‑1 (MQ=255)
aTCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTa > 2:3737591/1‑93 (MQ=255)
aTCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTa < 2:2472402/93‑1 (MQ=255)
tctctcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTAt < 1:1329480/93‑1 (MQ=255)
tctctcACTGTTAGACCCGATTTGTTATGCCGCAACGACCTCGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTAt > 2:763381/1‑93 (MQ=255)
ctctcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTAtt < 2:3798122/93‑1 (MQ=255)
ctcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCg < 2:3346079/93‑1 (MQ=255)
tcACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGt > 2:582090/1‑93 (MQ=255)
aCTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTgg < 1:1249666/93‑1 (MQ=255)
aCTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTgg > 1:4029089/1‑93 (MQ=255)
cTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGa > 2:3922938/1‑93 (MQ=255)
cTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGa > 2:1052982/1‑93 (MQ=255)
tGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCGTCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGaa < 1:739579/93‑1 (MQ=255)
gTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAt > 1:1737590/1‑93 (MQ=255)
ttAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAtt > 2:725540/1‑93 (MQ=255)
ttAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAtt > 2:257350/1‑93 (MQ=255)
tataCCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTg < 2:1005812/90‑1 (MQ=255)
aGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGc < 1:701165/93‑1 (MQ=255)
aCCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCgg < 1:3932998/93‑1 (MQ=255)
cccGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGgt < 2:3108813/93‑1 (MQ=255)
gCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGtt < 2:21655/93‑1 (MQ=255)
cTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTc < 2:2498063/93‑1 (MQ=255)
cTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTc > 1:2625314/1‑93 (MQ=255)
cTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTc < 2:621612/93‑1 (MQ=255)
tttGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCg < 1:2593462/93‑1 (MQ=255)
gTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAc < 2:776714/93‑1 (MQ=255)
gTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAc > 1:4030337/1‑93 (MQ=255)
ttATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAcc > 2:4325999/1‑93 (MQ=255)
tGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTg < 1:1865872/93‑1 (MQ=255)
tGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTg < 2:3404243/93‑1 (MQ=255)
gCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTgg < 2:2707984/93‑1 (MQ=255)
ccGCAACGACCTGGCGAATGACGATCATGACCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGc < 2:1487032/93‑1 (MQ=255)
ccGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGc < 2:3328489/93‑1 (MQ=255)
gCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGa < 1:331464/93‑1 (MQ=255)
aCGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGaaaa > 2:1571008/1‑93 (MQ=255)
aCGACATGGCGAATGTCTATCATTGCCGGCCTTCCCGCTGAAGATAACGATCGCTTTATTCGTGGAATTGCGGTGTGCGCATCGTGGCGaaaa < 2:4134979/93‑1 (MQ=255)
aCCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACg > 1:1402786/1‑93 (MQ=255)
ccTGGCGAATGACCATCATGGCCGGCCTTCCCGCTGAATATAACGATCGCTTTAGTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGc < 2:1637144/93‑1 (MQ=255)
cTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGcc > 2:630485/1‑93 (MQ=255)
cTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGcc < 1:1642038/93‑1 (MQ=255)
cTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGcc < 2:3174450/93‑1 (MQ=255)
cTGGAGAATGAACATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGcc < 1:3644952/93‑1 (MQ=255)
ggCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTg > 2:2144554/1‑93 (MQ=255)
ggCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTg > 2:1006412/1‑93 (MQ=255)
gCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTgg < 1:3138571/93‑1 (MQ=255)
gCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTgg < 2:4473333/93‑1 (MQ=255)
gCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTgg < 2:1975077/93‑1 (MQ=255)
gAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGa > 1:2406694/1‑93 (MQ=255)
aaTGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAt > 1:1140992/1‑93 (MQ=255)
aaTGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAt > 2:143066/1‑93 (MQ=255)
aaTGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAt < 1:1078653/93‑1 (MQ=255)
aaTGACCATCATTGCCGACCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAt < 1:4034267/93‑1 (MQ=255)
aTGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATc < 2:4384006/93‑1 (MQ=255)
gACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTa > 2:549229/1‑93 (MQ=255)
aCCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTAc > 1:252368/1‑93 (MQ=255)
aCCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTAc > 2:1562684/1‑93 (MQ=255)
catcatTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCa < 1:4178170/93‑1 (MQ=255)
catcatTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCa > 2:757606/1‑93 (MQ=255)
atcatTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCAt > 1:1572692/1‑93 (MQ=255)
catTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCa < 2:1943879/93‑1 (MQ=255)
catTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCa > 2:2768441/1‑93 (MQ=255)
ttGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCaga > 1:2125537/1‑93 (MQ=255)
tGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACCCCTGGGATCTACCATCagag < 2:2667556/93‑1 (MQ=255)
gCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGGGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGt > 1:4542622/1‑93 (MQ=255)
cGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCNTGNCGAAACACGCCTGGGATCTACCATCAGAGTCa > 2:3683594/1‑93 (MQ=255)
ggCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCAt > 2:4532394/1‑93 (MQ=255)
gCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATg < 2:257544/93‑1 (MQ=255)
gCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATg < 2:1665981/93‑1 (MQ=255)
cTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGt < 2:1794285/93‑1 (MQ=255)
ttCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCCGGGCGAAAAACGCCTGGGGTCTACCATCAGAGTCATGGTg > 2:4199765/1‑93 (MQ=255)
ttCCCGCTGAATATAACGAGCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTg > 2:4525797/1‑93 (MQ=255)
tCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGc > 1:3968919/1‑93 (MQ=255)
tCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGc < 2:4530811/93‑1 (MQ=255)
cccGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCa < 2:2891540/93‑1 (MQ=255)
cccGCTAAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCa < 2:3286679/93‑1 (MQ=255)
|
CCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCA > NC_000913/1923631‑1923808
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTCT > NC_000913/1923630‑1923813
|
CCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGA > SRR4302535.4222542/1‑94 (MQ=60)
CTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAAT > SRR4302535.3361922/1‑94 (MQ=60)
TTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATA < SRR4302535.4422988/94‑1 (MQ=60)
TCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATAT < SRR4302535.2407546/94‑1 (MQ=60)
TGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAAC < SRR4302535.975730/94‑1 (MQ=60)
TGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAAC < SRR4302535.3598902/94‑1 (MQ=60)
TGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAAC < SRR4302535.3516887/94‑1 (MQ=60)
GCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACG < SRR4302535.4139691/94‑1 (MQ=60)
CCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGA < SRR4302535.4101744/94‑1 (MQ=60)
CCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGA < SRR4302535.4067506/94‑1 (MQ=60)
CCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAT < SRR4302535.370192/94‑1 (MQ=60)
CCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAAC > SRR4302535.476394/1‑94 (MQ=60)
CACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCG < SRR4302535.3633058/94‑1 (MQ=60)
CCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCT < SRR4302535.355154/94‑1 (MQ=60)
CCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCT > SRR4302535.3150053/1‑94 (MQ=60)
CCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTT > SRR4302535.950244/1‑94 (MQ=60)
TCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATT < SRR4302535.1338963/94‑1 (MQ=60)
CTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTC < SRR4302535.2316268/94‑1 (MQ=60)
CACTGTTAGCCCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTGCCCGATGAATATAACGATCGCTTTATTCGTGG < SRR4302535.1682115/94‑1 (MQ=60)
CACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGG > SRR4302535.4056653/1‑94 (MQ=60)
ACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGA < SRR4302535.1258587/94‑1 (MQ=60)
TGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCGTCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAT < SRR4302535.744777/94‑1 (MQ=60)
TGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAAT > SRR4302535.1750149/1‑94 (MQ=60)
AGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCG > SRR4302535.965013/1‑94 (MQ=60)
AGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCG < SRR4302535.706081/94‑1 (MQ=60)
ACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGT < SRR4302535.3959842/94‑1 (MQ=60)
GCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTC > SRR4302535.2644129/1‑94 (MQ=60)
TTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGC < SRR4302535.2612092/94‑1 (MQ=60)
TGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAC > SRR4302535.4057911/1‑94 (MQ=60)
TGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCAC < SRR4302535.2639509/94‑1 (MQ=60)
TGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGG < SRR4302535.1879319/94‑1 (MQ=60)
GCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAA < SRR4302535.333761/94‑1 (MQ=60)
CGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAAC < SRR4302535.1424036/94‑1 (MQ=60)
GACCTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACG > SRR4302535.1412794/1‑94 (MQ=60)
CTGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCT < SRR4302535.1653910/94‑1 (MQ=60)
CTGGAGAATGAACATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCT < SRR4302535.3670195/94‑1 (MQ=60)
TGGCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGAGCGCTTTCATCGTGGCATTGCGGCGCTCGCACCGTGGCGAAAAACGCCTG > SRR4302535.743932/1‑94 (MQ=60)
GCGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGG < SRR4302535.3160413/94‑1 (MQ=60)
CGAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGA > SRR4302535.2424019/1‑94 (MQ=60)
GAATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGAT > SRR4302535.1149124/1‑94 (MQ=60)
AATGACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATC < SRR4302535.1086330/94‑1 (MQ=60)
AATGACCATCATTGCCGACCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATC < SRR4302535.4061887/94‑1 (MQ=60)
GACCATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTAC > SRR4302535.254106/1‑94 (MQ=60)
CATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCAT < SRR4302535.4206771/94‑1 (MQ=60)
CATCATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCAT > SRR4302535.1584043/1‑94 (MQ=60)
ATTGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGA > SRR4302535.2140857/1‑94 (MQ=60)
TGCCGGCCTTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGGGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGT > SRR4302535.4573691/1‑94 (MQ=60)
TTCCCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGC > SRR4302535.3996026/1‑94 (MQ=60)
CCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATG > SRR4302535.4278617/1‑94 (MQ=60)
CCGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATG > SRR4302535.3919822/1‑94 (MQ=60)
CGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGT > SRR4302535.1537853/1‑94 (MQ=60)
CGCTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGT > SRR4302535.2454981/1‑94 (MQ=60)
CTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTCT > SRR4302535.4109267/1‑94 (MQ=60)
CTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTCT > SRR4302535.452726/1‑94 (MQ=60)
CTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTCT > SRR4302535.1019420/1‑94 (MQ=60)
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CCCTTCCTGCCCCACCCGATCTCTCACTGTTAGACCCGCTTTGTTATGCCGCAACGACCTGGCGAATGACCATCATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCTGGGATCTACCATCAGAGTCATGGTGCATGTCT > NC_000913/1923630‑1923813
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
