Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,924,185 A→G G14G (GGA→GGG)  b1844 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,924,1850AG100.0% 575.3 / NA 183G14G (GGA→GGG) b1844hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (105/78);  total (105/78)

Only 100 of 210 total aligned reads displayed.

AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG  >  NC_000913/1924095‑1924274
                                                                                          |                                                                                         
aaGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCagggggg                                                                                         <  1:6682424/93‑1 (MQ=255)
aaGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCagggggg                                                                                         <  1:2539318/93‑1 (MQ=255)
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGTCATGTTGCGCATTATCGATCTAGAAACCTGCGGTTTGCaggggggg                                                                                        >  2:4214930/1‑93 (MQ=255)
 aGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCaggggggg                                                                                        >  1:3237733/1‑93 (MQ=255)
  ggCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAggggggga                                                                                       <  1:7072673/93‑1 (MQ=255)
   gCGATATCATTCCATTACGCTATTCTTTTTCGGCCTGGAGCATTCCATGTTGCGCATTATCGTTACATTAACCTGTGGTTTGCAGGGGGGGAt                                                                                      >  2:7001924/1‑93 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCg                                                                                    >  1:6999028/1‑93 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCg                                                                                    >  2:5329423/1‑93 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCg                                                                                    >  2:3151915/1‑93 (MQ=255)
     gATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCg                                                                                    >  2:3881891/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   >  2:3040483/1‑93 (MQ=255)
      atatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGt                                                                                   >  1:5173357/1‑93 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGTTCGtt                                                                                  >  1:5124562/1‑93 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGtt                                                                                  >  1:1591639/1‑93 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGtt                                                                                  >  1:3911886/1‑93 (MQ=255)
       tatCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGGTTGCAGGCGGGGATCGtt                                                                                  >  1:6467542/1‑93 (MQ=255)
         tCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTga                                                                                >  1:5434103/1‑93 (MQ=255)
         tCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTga                                                                                >  1:2814846/1‑93 (MQ=255)
          cATTCCATTACGCTAGTCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgag                                                                               <  2:603654/93‑1 (MQ=255)
           aTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgagt                                                                              >  1:2380956/1‑92 (MQ=255)
           aTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgagt                                                                              >  1:4488548/1‑92 (MQ=255)
           aTTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTgaga                                                                              >  2:6760228/1‑93 (MQ=255)
             tCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAtt                                                                            >  1:3676976/1‑93 (MQ=255)
                aTTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGcc                                                                         >  1:7399051/1‑93 (MQ=255)
                 ttACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGccc                                                                        >  2:3948979/1‑92 (MQ=255)
                 ttACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCct                                                                        >  2:3433207/1‑93 (MQ=255)
                  tACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctc                                                                       <  1:5399862/93‑1 (MQ=255)
                   aCGCTAGGCTTTTTCGGCCTGGAGCATGCCATGGTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCctct                                                                      >  1:4877110/1‑93 (MQ=255)
                     gCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGTCCGTTGAGATTGCCTTTGt                                                                    >  2:824022/1‑93 (MQ=255)
                     gCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGt                                                                    >  1:3627776/1‑93 (MQ=255)
                     gCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGt                                                                    <  2:5551901/93‑1 (MQ=255)
                      cTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGtt                                                                   <  2:2217304/93‑1 (MQ=255)
                       tAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTg                                                                  >  2:2447894/1‑93 (MQ=255)
                       tAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTg                                                                  >  1:6212881/1‑93 (MQ=255)
                           cTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGt                                                              <  1:1108570/93‑1 (MQ=255)
                            tttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTc                                                             >  1:4300998/1‑93 (MQ=255)
                            tttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTc                                                             >  1:4592309/1‑93 (MQ=255)
                             ttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCa                                                            <  2:5933964/93‑1 (MQ=255)
                             ttttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCa                                                            >  2:7615568/1‑93 (MQ=255)
                              tttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAt                                                           >  2:2883507/1‑93 (MQ=255)
                              tttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAt                                                           <  1:1683049/93‑1 (MQ=255)
                               ttCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAtt                                                          <  2:5010059/93‑1 (MQ=255)
                                 cGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGa                                                        <  1:4421720/93‑1 (MQ=255)
                                   gCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACg                                                      <  2:1316461/93‑1 (MQ=255)
                                     cTGGAGCATGCCATGTTGCGCATTATCGATACGGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGa                                                    >  1:3105846/1‑93 (MQ=255)
                                      tGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaa                                                   >  2:743069/1‑93 (MQ=255)
                                         ggCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGaaaaa                                                <  1:5122190/92‑1 (MQ=255)
                                          gCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAt                                               >  2:4052257/1‑93 (MQ=255)
                                          gCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAt                                               <  2:1544099/93‑1 (MQ=255)
                                            aTGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCg                                             >  1:259031/1‑93 (MQ=255)
                                            aTGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCg                                             >  2:54823/1‑93 (MQ=255)
                                             tGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGt                                            <  1:5005487/93‑1 (MQ=255)
                                             tGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGt                                            >  2:6565387/1‑93 (MQ=255)
                                              gCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTc                                           <  2:4724666/93‑1 (MQ=255)
                                              gCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTc                                           <  2:436011/93‑1 (MQ=255)
                                              gCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTc                                           >  2:1572050/1‑93 (MQ=255)
                                              gCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCCTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTc                                           <  1:4362727/93‑1 (MQ=255)
                                                 aTGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAc                                        <  2:4207132/93‑1 (MQ=255)
                                                  tGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcc                                       >  1:2716736/1‑93 (MQ=255)
                                                  tGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcc                                       >  1:2057737/1‑93 (MQ=255)
                                                   gTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAccc                                      <  2:269465/93‑1 (MQ=255)
                                                    ttGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcccc                                     <  1:3011295/93‑1 (MQ=255)
                                                    ttGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcccc                                     >  2:1143485/1‑93 (MQ=255)
                                                    ttGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcccc                                     >  1:6746895/1‑93 (MQ=255)
                                                    ttGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAcccc                                     >  1:5838156/1‑93 (MQ=255)
                                                      gcgcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCAt                                   >  1:2998752/1‑93 (MQ=255)
                                                      gcgcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCAt                                   >  1:3362663/1‑93 (MQ=255)
                                                        gcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGCTTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGa                                 >  1:5582670/1‑93 (MQ=255)
                                                        gcATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGa                                 <  1:6117606/93‑1 (MQ=255)
                                                          aTTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGc                               >  1:7182106/1‑93 (MQ=255)
                                                           ttATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGcc                              >  1:7328/1‑93 (MQ=255)
                                                           ttATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGcc                              >  2:3637355/1‑93 (MQ=255)
                                                           ttATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGcc                              >  1:4735282/1‑93 (MQ=255)
                                                           ttATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGcc                              >  1:5665685/1‑93 (MQ=255)
                                                             aTCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAc                            <  2:1985910/93‑1 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                           <  2:6912745/93‑1 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                           <  1:2746572/93‑1 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                           >  2:4930291/1‑93 (MQ=255)
                                                              tCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCAcc                           >  2:3673709/1‑93 (MQ=255)
                                                               cGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCt                          <  1:7553484/93‑1 (MQ=255)
                                                                gATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTg                         >  2:1233037/1‑93 (MQ=255)
                                                                gATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTg                         >  1:7790638/1‑93 (MQ=255)
                                                                   aCAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCGTTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTg                      >  1:4538635/1‑93 (MQ=255)
                                                                   aCAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTg                      <  1:146149/93‑1 (MQ=255)
                                                                     aGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgcg                    >  1:5878266/1‑93 (MQ=255)
                                                                     aGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgcg                    <  1:4173589/93‑1 (MQ=255)
                                                                      gAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTgcgc                   >  1:2863374/1‑93 (MQ=255)
                                                                        aaCCTGCGGTTTGCAGGGTGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGccc                 <  1:5908470/93‑1 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAt             <  2:7207278/93‑1 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAt             <  2:6389400/93‑1 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAt             >  2:2515371/1‑93 (MQ=255)
                                                                            tGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGAt             >  2:6878464/1‑93 (MQ=255)
                                                                             gCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATc            >  2:5734681/1‑93 (MQ=255)
                                                                             gCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATc            <  2:377817/93‑1 (MQ=255)
                                                                                gTTTGCAGGGGGGGAGCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCACCCCCATGAGCCACCTGGTGCGCCCCGATCGTc         <  2:7133456/93‑1 (MQ=255)
                                                                                 tttGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTcc        >  1:2524357/1‑93 (MQ=255)
                                                                                  ttGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCt       <  2:2620615/93‑1 (MQ=255)
                                                                                      agggggggATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTa   <  1:6488145/93‑1 (MQ=255)
                                                                                      agggggggATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTa   <  2:7899269/93‑1 (MQ=255)
                                                                                       gggggggaTCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAg  >  1:7855641/1‑93 (MQ=255)
                                                                                          |                                                                                         
AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG  >  NC_000913/1924095‑1924274

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCC  >  NC_000913/1924094‑1924277
                                                                                           |                                                                                            
CAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGG                                                                                            <  SRR4302543.286721/94‑1 (MQ=60)
 AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                           >  SRR4302543.6736993/1‑94 (MQ=60)
 AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                           <  SRR4302543.6745504/94‑1 (MQ=60)
 AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                           >  SRR4302543.3267021/1‑94 (MQ=60)
 AAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGG                                                                                           <  SRR4302543.2562465/94‑1 (MQ=60)
   GGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGAT                                                                                         <  SRR4302543.7141342/94‑1 (MQ=60)
   GGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGAT                                                                                         <  SRR4302543.7141343/94‑1 (MQ=60)
     CGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCG                                                                                       >  SRR4302543.7863906/1‑94 (MQ=60)
     CGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCG                                                                                       >  SRR4302543.7065241/1‑94 (MQ=60)
      GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                      >  SRR4302543.4177079/1‑94 (MQ=60)
      GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                      >  SRR4302543.4365815/1‑94 (MQ=60)
      GATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                      >  SRR4302543.5220074/1‑94 (MQ=60)
      GATATCATTCCATTACGCTAGGCTTTTTAGGCCTGGAGCATGCCATGTTGCGCATTATCCATACAGAAACCTGCGGTTTGCAGGGGGGGATCGT                                                                                      >  SRR4302543.2550117/1‑94 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGTTCGTT                                                                                     >  SRR4302543.5170893/1‑94 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGTTCGTT                                                                                     >  SRR4302543.2746463/1‑94 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                     >  SRR4302543.3946417/1‑94 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                     >  SRR4302543.1605846/1‑94 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                     >  SRR4302543.5170891/1‑94 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTT                                                                                     <  SRR4302543.5959130/94‑1 (MQ=60)
       ATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGGTTGCAGGCGGGGATCGTT                                                                                     >  SRR4302543.6528475/1‑94 (MQ=60)
         ATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGA                                                                                   >  SRR4302543.5483465/1‑94 (MQ=60)
         ATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGA                                                                                   >  SRR4302543.2840626/1‑94 (MQ=60)
           CATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGT                                                                                 >  SRR4302543.2402516/1‑94 (MQ=60)
           CATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGT                                                                                 >  SRR4302543.4529319/1‑94 (MQ=60)
           CATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGA                                                                                 >  SRR4302543.7361833/1‑94 (MQ=60)
            ATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGAT                                                                                >  SRR4302543.4981097/1‑94 (MQ=60)
             TTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATT                                                                               <  SRR4302543.5980978/94‑1 (MQ=60)
             TTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATT                                                                               <  SRR4302543.4996213/94‑1 (MQ=60)
             TTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATT                                                                               >  SRR4302543.3709269/1‑94 (MQ=60)
             TTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATT                                                                               <  SRR4302543.4522174/94‑1 (MQ=60)
              TCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTG                                                                              <  SRR4302543.4732857/94‑1 (MQ=60)
               CCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGC                                                                             >  SRR4302543.534605/1‑94 (MQ=60)
                CATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCC                                                                            >  SRR4302543.7470093/1‑94 (MQ=60)
                 ATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCT                                                                           <  SRR4302543.2978183/94‑1 (MQ=60)
                 ATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCT                                                                           >  SRR4302543.5735433/1‑94 (MQ=60)
                  TTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAGACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTC                                                                          <  SRR4302543.5896023/94‑1 (MQ=60)
                   TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                         >  SRR4302543.6749976/1‑94 (MQ=60)
                   TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                         <  SRR4302543.7161550/94‑1 (MQ=60)
                   TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                         <  SRR4302543.5448962/94‑1 (MQ=60)
                   TACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGGTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCT                                                                         >  SRR4302543.4921562/1‑94 (MQ=60)
                     CGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGT                                                                       <  SRR4302543.2747967/94‑1 (MQ=60)
                     CGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGT                                                                       >  SRR4302543.3659724/1‑94 (MQ=60)
                      GCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTT                                                                      >  SRR4302543.4334994/1‑94 (MQ=60)
                       CTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTG                                                                     >  SRR4302543.6271541/1‑94 (MQ=60)
                       CTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTG                                                                     >  SRR4302543.1695088/1‑94 (MQ=60)
                         AGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAT                                                                   <  SRR4302543.2691592/94‑1 (MQ=60)
                         AGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAT                                                                   <  SRR4302543.7456307/94‑1 (MQ=60)
                         AGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGAT                                                                   >  SRR4302543.4780664/1‑94 (MQ=60)
                          GGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATG                                                                  >  SRR4302543.5450323/1‑94 (MQ=60)
                           GCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGT                                                                 <  SRR4302543.7350983/94‑1 (MQ=60)
                            CTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTC                                                                >  SRR4302543.4340074/1‑94 (MQ=60)
                            CTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTC                                                                >  SRR4302543.4634019/1‑94 (MQ=60)
                            CTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTC                                                                <  SRR4302543.1118575/94‑1 (MQ=60)
                             TTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCA                                                               >  SRR4302543.2454765/1‑94 (MQ=60)
                              TTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCAT                                                              >  SRR4302543.187975/1‑94 (MQ=60)
                               TTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATT                                                             <  SRR4302543.1698153/94‑1 (MQ=60)
                                TTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTG                                                            <  SRR4302543.277883/94‑1 (MQ=60)
                                 TCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGA                                                           >  SRR4302543.4414500/1‑94 (MQ=60)
                                  CGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGAC                                                          <  SRR4302543.4461795/94‑1 (MQ=60)
                                   GGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACG                                                         <  SRR4302543.1284787/94‑1 (MQ=60)
                                    GCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGG                                                        <  SRR4302543.3672186/94‑1 (MQ=60)
                                     CCTGGAGCATGCCATGTTGCGCATTATCGATACGGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGA                                                       >  SRR4302543.3133786/1‑94 (MQ=60)
                                          GGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAT                                                  <  SRR4302543.5168500/94‑1 (MQ=60)
                                          AGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAT                                                  <  SRR4302543.7506415/94‑1 (MQ=60)
                                          AGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAT                                                  >  SRR4302543.1542948/1‑94 (MQ=60)
                                          AGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAAT                                                  <  SRR4302543.560652/94‑1 (MQ=60)
                                           GCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATC                                                 <  SRR4302543.3579270/94‑1 (MQ=60)
                                           GCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATC                                                 <  SRR4302543.3392289/94‑1 (MQ=60)
                                            CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                >  SRR4302543.261295/1‑94 (MQ=60)
                                            CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                >  SRR4302543.3258773/1‑94 (MQ=60)
                                            CATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTCGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCG                                                <  SRR4302543.5958554/94‑1 (MQ=60)
                                             ATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGT                                               >  SRR4302543.6545213/1‑94 (MQ=60)
                                              TGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTC                                              <  SRR4302543.5051047/94‑1 (MQ=60)
                                               GCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCCTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCA                                             <  SRR4302543.4402252/94‑1 (MQ=60)
                                                 CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAC                                           >  SRR4302543.3828800/1‑94 (MQ=60)
                                                 CATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAAC                                           >  SRR4302543.6523036/1‑94 (MQ=60)
                                                  ATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACC                                          >  SRR4302543.2741421/1‑94 (MQ=60)
                                                  ATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACC                                          >  SRR4302543.6243432/1‑94 (MQ=60)
                                                  ATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACC                                          >  SRR4302543.2076151/1‑94 (MQ=60)
                                                    GTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCC                                        >  SRR4302543.6810607/1‑94 (MQ=60)
                                                    GTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCC                                        >  SRR4302543.5891259/1‑94 (MQ=60)
                                                     TTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCA                                       <  SRR4302543.3038563/94‑1 (MQ=60)
                                                     TTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCA                                       <  SRR4302543.3038561/94‑1 (MQ=60)
                                                      TGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCAT                                      >  SRR4302543.3025945/1‑94 (MQ=60)
                                                      TGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCAT                                      >  SRR4302543.3392901/1‑94 (MQ=60)
                                                       GCGCAGTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATG                                     <  SRR4302543.4603232/94‑1 (MQ=60)
                                                        CGCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGCTTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGA                                    >  SRR4302543.5633506/1‑94 (MQ=60)
                                                         GCATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAG                                   <  SRR4302543.6175555/94‑1 (MQ=60)
                                                          CATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGC                                  >  SRR4302543.7251804/1‑94 (MQ=60)
                                                           ATTATTGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCC                                 >  SRR4302543.5717371/1‑94 (MQ=60)
                                                           ATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCC                                 >  SRR4302543.7931335/1‑94 (MQ=60)
                                                           ATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCC                                 >  SRR4302543.7391/1‑94 (MQ=60)
                                                           ATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCC                                 >  SRR4302543.4778556/1‑94 (MQ=60)
                                                           ATTATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCC                                 >  SRR4302543.5717372/1‑94 (MQ=60)
                                                              ATCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACC                              <  SRR4302543.2563912/94‑1 (MQ=60)
                                                               TCGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCT                             <  SRR4302543.2771544/94‑1 (MQ=60)
                                                                CGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTG                            >  SRR4302543.7864067/1‑94 (MQ=60)
                                                                CGATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTG                            <  SRR4302543.7625418/94‑1 (MQ=60)
                                                                  ATACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGT                          >  SRR4302543.2851048/1‑94 (MQ=60)
                                                                   TACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCGTTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTG                         >  SRR4302543.4579958/1‑94 (MQ=60)
                                                                    ACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGgcaaaccccaccaccccccccctc                        >  SRR4302543.6887174/1‑70 (MQ=60)
                                                                    ACAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGC                        <  SRR4302543.147419/94‑1 (MQ=60)
                                                                     CAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCG                       >  SRR4302543.5173913/1‑94 (MQ=60)
                                                                     CAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCG                       >  SRR4302543.5931817/1‑94 (MQ=60)
                                                                     CAGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCG                       >  SRR4302543.4553136/1‑94 (MQ=60)
                                                                      AGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGC                      >  SRR4302543.2889478/1‑94 (MQ=60)
                                                                      AGAAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGC                      <  SRR4302543.4211387/94‑1 (MQ=60)
                                                                        AAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCC                    <  SRR4302543.5122880/94‑1 (MQ=60)
                                                                        AAACCTGCGGTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCC                    <  SRR4302543.3118762/94‑1 (MQ=60)
                                                                         AACCTGCGGTTTGCAGGGTGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCC                   <  SRR4302543.5962406/94‑1 (MQ=60)
                                                                                 GTTTGCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCC           >  SRR4302543.2547310/1‑94 (MQ=60)
                                                                                     GCAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATT       <  SRR4302543.2184643/94‑1 (MQ=60)
                                                                                      CAGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTA      >  SRR4302543.6827181/1‑94 (MQ=60)
                                                                                       AGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG     <  SRR4302543.6549269/94‑1 (MQ=60)
                                                                                       AGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG     <  SRR4302543.7868530/94‑1 (MQ=60)
                                                                                       AGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG     >  SRR4302543.7929648/1‑94 (MQ=60)
                                                                                       AGGGGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAACCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAG     <  SRR4302543.3916166/94‑1 (MQ=60)
                                                                                          GGGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCC  >  SRR4302543.2334132/1‑94 (MQ=60)
                                                                                           |                                                                                            
CAAGGCGATATCATTCCATTACGCTAGGCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATTGCCTCTGTTGATGTCATTGACGGAAAAATCGTCAACCCCATGAGCCACCTGGTGCGCCCCGATCGTCCTATTAGTCC  >  NC_000913/1924094‑1924277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑