Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,930,097 |
(A)7→6 |
intergenic (+14/+42) |
purT → / ← eda |
phosphoribosylglycinamide formyltransferase 2/2‑keto‑3‑deoxygluconate 6‑phosphate aldolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,930,091 | 0 | A | . | 100.0%
| 447.9
/ NA
| 99 | intergenic (+8/+48) | purT/eda | phosphoribosylglycinamide formyltransferase 2/2‑keto‑3‑deoxygluconate 6‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (52/47); total (52/47) |
Only 100 of 108 total aligned reads displayed.
GGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAG > NC_000913/1930002‑1930179
|
ggCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaa < 2:3425380/93‑1 (MQ=255)
gCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaa > 1:4543944/1‑93 (MQ=255)
cACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaa < 2:3932251/93‑1 (MQ=255)
aCTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaac < 1:1353600/93‑2 (MQ=255)
cTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAAGGTTACACCCGGCaaacaacc > 1:3298906/1‑91 (MQ=255)
tGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCaaaaaacgc > 2:4444223/1‑90 (MQ=255)
gCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTa < 1:2951498/93‑1 (MQ=255)
tACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACa > 1:1996270/1‑93 (MQ=255)
tGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACaaaa > 2:2908150/1‑93 (MQ=255)
tGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACaaaa < 2:1610035/93‑1 (MQ=255)
gCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACaaaaa > 1:4276537/1‑93 (MQ=255)
cAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAAt < 2:4314240/93‑1 (MQ=255)
agagagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATg > 2:1279953/1‑93 (MQ=255)
gagagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGc < 1:3427690/93‑1 (MQ=255)
gagagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGc > 2:291347/1‑93 (MQ=255)
gagagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGc > 2:685136/1‑93 (MQ=255)
agagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGcc > 2:1337230/1‑93 (MQ=255)
agagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGcc < 1:4241562/93‑1 (MQ=255)
gagTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGccc < 1:459522/93‑1 (MQ=255)
gtgtTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGa > 1:2578956/1‑93 (MQ=255)
gtgtTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGa > 2:3813169/1‑93 (MQ=255)
gtgtTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGa < 1:3171381/93‑1 (MQ=255)
gtggtgTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGa < 1:363235/93‑1 (MQ=255)
tgttgtTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAt > 1:2367254/1‑93 (MQ=255)
tgttgtTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAt > 2:2892300/1‑93 (MQ=255)
ttgttgACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATcc < 1:3953694/93‑1 (MQ=255)
tgttgACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCt < 2:2592295/93‑1 (MQ=255)
gttgACGCCATTAAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTc < 2:813980/93‑1 (MQ=255)
ttgACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCg > 2:3352131/1‑93 (MQ=255)
tgACGCCATTGAACGCGCGAAGCACGCCGCAGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACCCTACAAAAATGCCCGATCCTCGa < 2:1756841/93‑1 (MQ=255)
gACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGAt < 1:450015/93‑1 (MQ=255)
gACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGGAAAAGTACAGGGTTAAACCCGGC‑ACAAAACGCTACAAAAATGCCCGATCCTCGAt > 1:3680018/1‑93 (MQ=255)
cGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCg < 2:1770470/93‑1 (MQ=255)
gCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCgg < 2:3614265/93‑1 (MQ=255)
ccATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCggg > 1:1523436/1‑93 (MQ=255)
ccATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCggg > 2:303787/1‑93 (MQ=255)
cATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGc > 1:1560732/1‑93 (MQ=255)
aTTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCa > 1:1013599/1‑93 (MQ=255)
aTTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCa > 1:1414966/1‑93 (MQ=255)
aTTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCa > 2:3736906/1‑93 (MQ=255)
gAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCAttt > 2:3539885/1‑93 (MQ=255)
accgcgcgAGCCACGCCGGTGAAGAGGAAAAAGTACAGGGTTAACCCCGG‑AAAAAAACGCAAAAAAAATCCCCGCCCCTCGATGGGGCAtttt < 2:3977323/91‑1 (MQ=255)
aaCGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCAtttt < 2:1479849/93‑1 (MQ=255)
aaCGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCAtttt > 1:559383/1‑93 (MQ=255)
aCGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTg > 2:726689/1‑93 (MQ=255)
cacgcgAAGCACGCCGCGGGACAGGTAAAATTACAGGGTTAACACCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGa < 1:695461/91‑1 (MQ=255)
gcgcgAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGAc > 2:4272271/1‑93 (MQ=255)
cgcgAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACt < 1:2015022/93‑1 (MQ=255)
gcgAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACtt > 1:2374252/1‑93 (MQ=255)
cgAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACttt < 2:2060480/93‑1 (MQ=255)
cgAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACttt < 1:2060797/93‑1 (MQ=255)
cgAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACttt < 2:4248578/93‑1 (MQ=255)
gAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACtttt > 1:763460/1‑93 (MQ=255)
aaGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTa < 1:2896476/93‑1 (MQ=255)
aaGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTa > 2:532571/1‑93 (MQ=255)
aaGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTa > 1:3580007/1‑93 (MQ=255)
aGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTAc > 2:4458816/1‑93 (MQ=255)
aGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTAc < 2:1876050/93‑1 (MQ=255)
gCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACa < 1:3796313/93‑1 (MQ=255)
gCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACa < 1:3114256/93‑1 (MQ=255)
gCACCCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACa < 2:3735777/93‑1 (MQ=255)
cACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAg > 2:2156611/1‑93 (MQ=255)
aCGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAACCGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGc < 2:3706832/93‑1 (MQ=255)
aCGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGc > 1:489321/1‑93 (MQ=255)
aCGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCCCCATCGGGGATTTTTACTTTTTCAGc > 1:1717863/1‑93 (MQ=255)
cgccgcCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCt < 2:3824799/93‑1 (MQ=255)
ccgccgGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTa < 2:2815988/93‑1 (MQ=255)
ccgccgCAAAGATAAAAATACAGGGTT‑AACCCCGAAAAAAAGCGGTCCAAAAATGCCCCATCCTTGTCCGGCAATTTTGACTTTTACAGCTTa < 2:3992541/93‑1 (MQ=255)
cgccgGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAg > 1:325315/1‑93 (MQ=255)
gccgGACAGGTAAAAGTACAGGGTTAACCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAgc < 1:3282334/93‑1 (MQ=255)
gccgGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAgc > 1:3510333/1‑93 (MQ=255)
gccgGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAgc < 1:3767195/93‑1 (MQ=255)
cgGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAgcgc > 2:2708796/1‑93 (MQ=255)
gACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCt > 2:749813/1‑93 (MQ=255)
cAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTTGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTc < 2:2942067/93‑1 (MQ=255)
cAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTc < 1:391231/93‑1 (MQ=255)
aGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCt > 2:1587242/1‑93 (MQ=255)
aGGTAAAAGTACAGGGTAAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCt < 1:2581305/93‑1 (MQ=255)
ggTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTa < 2:1349775/93‑1 (MQ=255)
ggTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTa < 1:687265/93‑1 (MQ=255)
gTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTAc > 1:2002714/1‑93 (MQ=255)
gTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTAc < 1:696844/93‑1 (MQ=255)
tAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACa < 1:3820285/93‑1 (MQ=255)
aaaGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGc < 1:1952863/93‑1 (MQ=255)
aaaGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGAGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGc < 1:2415135/93‑1 (MQ=255)
aaGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCt < 2:1579051/93‑1 (MQ=255)
aGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCCATCCTCGATCGGGGATTTTTTCTTTTTTACCTTTGCGCCTTCTTCAGCtt > 2:3220601/1‑93 (MQ=255)
gTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTc < 1:3130861/93‑1 (MQ=255)
gTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTc > 2:4622087/1‑93 (MQ=255)
aCAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCAc < 1:4482702/93‑1 (MQ=255)
cAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACCGCTTATCGCCTTCTACCGCTTCatg > 2:2155861/1‑91 (MQ=255)
aGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCAcgc < 1:1565697/93‑1 (MQ=255)
gggTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCAcgcg > 2:2155741/1‑93 (MQ=255)
ggTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACgcgc > 1:3555709/1‑93 (MQ=255)
ttAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCa > 1:1276534/1‑93 (MQ=255)
aaaCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGc < 2:1410133/93‑1 (MQ=255)
aaCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCt > 2:1913806/1‑93 (MQ=255)
aaCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCt > 1:2910887/1‑93 (MQ=255)
aCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCtt > 2:586843/1‑93 (MQ=255)
cccGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTa > 2:1565845/1‑93 (MQ=255)
|
GGCACTGGCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAG > NC_000913/1930002‑1930179
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCG > NC_000913/1930009‑1930190
|
GCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTAC < SRR4302535.2972234/94‑1 (MQ=60)
CTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACA > SRR4302535.2010642/1‑94 (MQ=60)
TGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAA > SRR4302535.4305808/1‑94 (MQ=60)
CAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATG > SRR4302535.4258103/1‑94 (MQ=60)
AGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGC > SRR4302535.989374/1‑94 (MQ=60)
GAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCC < SRR4302535.3451517/94‑1 (MQ=60)
AGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCC < SRR4302535.4270592/94‑1 (MQ=60)
GAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCG < SRR4302535.462734/94‑1 (MQ=60)
AGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGA > SRR4302535.2597486/1‑94 (MQ=60)
GTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAT < SRR4302535.3193339/94‑1 (MQ=60)
GTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAT > SRR4302535.2384250/1‑94 (MQ=60)
GTGGTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGAT < SRR4302535.365738/94‑1 (MQ=60)
TTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCT < SRR4302535.3980684/94‑1 (MQ=60)
TGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGGAAAAGTACAGGGTTAAACCCGGC‑ACAAAACGCTACAAAAATGCCCGATCCTCGAT > SRR4302535.3705487/1‑94 (MQ=60)
GACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATC < SRR4302535.453167/94‑1 (MQ=60)
GCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGG > SRR4302535.1534410/1‑94 (MQ=60)
CCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGC > SRR4302535.1571978/1‑94 (MQ=60)
CCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGC > SRR4302535.2148617/1‑94 (MQ=60)
CATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCA > SRR4302535.1020806/1‑94 (MQ=60)
CATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCA > SRR4302535.1425067/1‑94 (MQ=60)
GAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTT > SRR4302535.563292/1‑94 (MQ=60)
CACGCGAAGCACGCCGCGGGACAGGTAAAATTACAGGGTTAACACCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGAC < SRR4302535.700340/94‑1 (MQ=60)
CGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTT > SRR4302535.2391307/1‑94 (MQ=60)
CGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTT < SRR4302535.2029537/94‑1 (MQ=60)
CGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTT < SRR4302535.2075648/94‑1 (MQ=60)
CGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTT > SRR4302535.768838/1‑94 (MQ=60)
CGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCCATCCTCGATCGGGCATTTTtcgtttt > SRR4302535.139762/1‑87 (MQ=60)
GAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTA > SRR4302535.3604819/1‑94 (MQ=60)
AAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTAC < SRR4302535.2916957/94‑1 (MQ=60)
GCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAG < SRR4302535.3822482/94‑1 (MQ=60)
GCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAG < SRR4302535.3135937/94‑1 (MQ=60)
CACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGC > SRR4302535.492757/1‑94 (MQ=60)
CACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCCCCATCGGGGATTTTTACTTTTTCAGC > SRR4302535.1730293/1‑94 (MQ=60)
CCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAG > SRR4302535.327566/1‑94 (MQ=60)
CGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGC > SRR4302535.3534725/1‑94 (MQ=60)
GCCGGACAGGTAAAAGTACAGGGTTAACCCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCG < SRR4302535.3305129/94‑1 (MQ=60)
GCCGGACAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCG < SRR4302535.3793207/94‑1 (MQ=60)
CAGGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCT < SRR4302535.393956/94‑1 (MQ=60)
AGGTAAAAGTACAGGGTAAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTA < SRR4302535.2599847/94‑1 (MQ=60)
GGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTAC < SRR4302535.692079/94‑1 (MQ=60)
GGTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTAC > SRR4302535.2017145/1‑94 (MQ=60)
GTAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACA < SRR4302535.701730/94‑1 (MQ=60)
TAAAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAG < SRR4302535.3846644/94‑1 (MQ=60)
AAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCT < SRR4302535.1966919/94‑1 (MQ=60)
AAAGTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGAGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCT < SRR4302535.2432521/94‑1 (MQ=60)
GTACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCA < SRR4302535.3152668/94‑1 (MQ=60)
ACAGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACG < SRR4302535.4513467/94‑1 (MQ=60)
AGGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCG < SRR4302535.1577000/94‑1 (MQ=60)
GGGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGC > SRR4302535.3580371/1‑94 (MQ=60)
GGTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATTCTCGATCGGGCATTTTGTCTTTTtcatcttaacggcttctacaacctccccccac > SRR4302535.3972539/1‑62 (MQ=60)
GTTAAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCA > SRR4302535.1285649/1‑94 (MQ=60)
AAACCCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCT > SRR4302535.2931448/1‑94 (MQ=60)
CCGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGT < SRR4302535.3282446/94‑1 (MQ=60)
CGGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTA > SRR4302535.1545567/1‑94 (MQ=60)
GGC‑AAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAA > SRR4302535.2721722/1‑94 (MQ=60)
gcAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAAT < SRR4302535.3642695/92‑1 (MQ=60)
CAAAAAACGCTAAAAAAATGCCCGATACTCGATCGGGCATTTTGACTTTTAAAGCTTAGCGCCATCTACAGCTTCACGCGCCAGCTTAGTACTG > SRR4302535.2249760/1‑94 (MQ=60)
AAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGG > SRR4302535.4649734/1‑94 (MQ=60)
AAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGG < SRR4302535.2905168/94‑1 (MQ=60)
ACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCG > SRR4302535.2277917/1‑94 (MQ=60)
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GCTACTGCAGAGAGTGTTGTTGACGCCATTGAACGCGCGAAGCACGCCGCCGGACAGGTAAAAGTACAGGGTTAAACCCGGCAAAAAAACGCTACAAAAATGCCCGATCCTCGATCGGGCATTTTGACTTTTACAGCTTAGCGCCTTCTACAGCTTCACGCGCCAGCTTAGTAATGCGGTCG > NC_000913/1930009‑1930190
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
