Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTT  >  NC_000913/1931251‑1931432
                                                                                        |                                                                                             
CCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACG                                                                                          <  SRR4302543.489116/94‑1 (MQ=60)
 CGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGG                                                                                         >  SRR4302543.4858063/1‑94 (MQ=60)
   GCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCC                                                                                       <  SRR4302543.5666858/94‑1 (MQ=60)
    CATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCC                                                                                      >  SRR4302543.5747352/1‑94 (MQ=60)
    CATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCC                                                                                      >  SRR4302543.3732625/1‑94 (MQ=60)
    CATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCC                                                                                      <  SRR4302543.1807327/94‑1 (MQ=60)
    CATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCC                                                                                      >  SRR4302543.4119487/1‑94 (MQ=60)
      TAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAG                                                                                    <  SRR4302543.1157144/94‑1 (MQ=60)
      TAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAG                                                                                    <  SRR4302543.3159375/94‑1 (MQ=60)
      TAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAG                                                                                    <  SRR4302543.1713820/94‑1 (MQ=60)
       AACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGG                                                                                   >  SRR4302543.1106045/1‑94 (MQ=60)
       AACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGG                                                                                   <  SRR4302543.6369254/94‑1 (MQ=60)
        ACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGT                                                                                  >  SRR4302543.4207752/1‑94 (MQ=60)
         CGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTT                                                                                 >  SRR4302543.2293768/1‑94 (MQ=60)
          GTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTA                                                                                <  SRR4302543.3312191/94‑1 (MQ=60)
           TCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTAC                                                                               <  SRR4302543.6901850/94‑1 (MQ=60)
            CATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACC                                                                              >  SRR4302543.5015545/1‑94 (MQ=60)
            CATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTAag                                                                              >  SRR4302543.3546931/1‑92 (MQ=60)
             ATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCG                                                                             >  SRR4302543.1560946/1‑94 (MQ=60)
             ATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCG                                                                             >  SRR4302543.4773203/1‑94 (MQ=60)
               GCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCT                                                                           <  SRR4302543.1049701/94‑1 (MQ=60)
                CTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTT                                                                          >  SRR4302543.2640666/1‑94 (MQ=60)
                CTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTT                                                                          >  SRR4302543.5144929/1‑94 (MQ=60)
                   GCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAAC                                                                       <  SRR4302543.4959982/94‑1 (MQ=60)
                   GCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAAC                                                                       <  SRR4302543.4246600/94‑1 (MQ=60)
                     TTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACAC                                                                     <  SRR4302543.3147145/94‑1 (MQ=60)
                       TCAAAAACAACCGCTGGCGCGTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTT                                                                   <  SRR4302543.1358896/94‑1 (MQ=60)
                         AAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTT                                                                 <  SRR4302543.7748814/94‑1 (MQ=60)
                         AAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTT                                                                 <  SRR4302543.7312388/94‑1 (MQ=60)
                         AAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTT                                                                 <  SRR4302543.3602518/94‑1 (MQ=60)
                         AAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTT                                                                 <  SRR4302543.8004237/94‑1 (MQ=60)
                          AAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTG                                                                >  SRR4302543.6901266/1‑94 (MQ=60)
                            AACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTC                                                              <  SRR4302543.3962483/94‑1 (MQ=60)
                            AACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTC                                                              >  SRR4302543.887058/1‑94 (MQ=60)
                               AACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCA                                                           <  SRR4302543.7127861/94‑1 (MQ=60)
                                ACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCAC                                                          <  SRR4302543.8002128/94‑1 (MQ=60)
                                  CGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCA                                                        >  SRR4302543.7479541/1‑94 (MQ=60)
                                   GCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCAT                                                       <  SRR4302543.2136441/94‑1 (MQ=60)
                                   GCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCAT                                                       <  SRR4302543.6048812/94‑1 (MQ=60)
                                      GGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGAT                                                    >  SRR4302543.3297303/1‑94 (MQ=60)
                                        CGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGA                                                  <  SRR4302543.2193382/94‑1 (MQ=60)
                                         GCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAG                                                 <  SRR4302543.747828/94‑1 (MQ=60)
                                          CTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGA                                                >  SRR4302543.620414/1‑94 (MQ=60)
                                          CTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGA                                                >  SRR4302543.5163616/1‑94 (MQ=60)
                                          CTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGA                                                <  SRR4302543.3036921/94‑1 (MQ=60)
                                           TTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAG                                               >  SRR4302543.2321194/1‑94 (MQ=60)
                                           TTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAG                                               >  SRR4302543.6302832/1‑94 (MQ=60)
                                            TCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGA                                              <  SRR4302543.1242642/94‑1 (MQ=60)
                                             CAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAA                                             <  SRR4302543.5892796/94‑1 (MQ=60)
                                             CAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAA                                             <  SRR4302543.206878/94‑1 (MQ=60)
                                              AATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAA                                            <  SRR4302543.4977875/94‑1 (MQ=60)
                                               ATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAG                                           <  SRR4302543.5040989/94‑1 (MQ=60)
                                               ATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAG                                           <  SRR4302543.7791737/94‑1 (MQ=60)
                                                TCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGG                                          <  SRR4302543.2762163/94‑1 (MQ=60)
                                                TCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGG                                          <  SRR4302543.283046/94‑1 (MQ=60)
                                                 CACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGT                                         <  SRR4302543.4924087/94‑1 (MQ=60)
                                                 CACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGT                                         <  SRR4302543.1934629/94‑1 (MQ=60)
                                                 CACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGT                                         >  SRR4302543.1787481/1‑94 (MQ=60)
                                                  ACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTT                                        <  SRR4302543.5515096/94‑1 (MQ=60)
                                                  ACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTT                                        <  SRR4302543.7569122/94‑1 (MQ=60)
                                                   CCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTG                                       <  SRR4302543.2632460/94‑1 (MQ=60)
                                                    CTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGT                                      <  SRR4302543.5690564/94‑1 (MQ=60)
                                                    CTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGT                                      >  SRR4302543.301174/1‑94 (MQ=60)
                                                    CTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGT                                      <  SRR4302543.4527250/94‑1 (MQ=60)
                                                     TGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTT                                     <  SRR4302543.4381221/94‑1 (MQ=60)
                                                      ggtccccacccggccgGGCAGAGTTTTTCATAACGGCACGGCCC‑GGTTTCCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCG                                   <  SRR4302543.3639433/78‑1 (MQ=60)
                                                      GGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTC                                    <  SRR4302543.828331/94‑1 (MQ=60)
                                                       GTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCG                                   <  SRR4302543.5768792/94‑1 (MQ=60)
                                                        TTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGA                                  <  SRR4302543.7477205/94‑1 (MQ=60)
                                                        TTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGA                                  <  SRR4302543.2586344/94‑1 (MQ=60)
                                                        TTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGA                                  >  SRR4302543.1265640/1‑94 (MQ=60)
                                                         TCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAA                                 <  SRR4302543.2102687/94‑1 (MQ=60)
                                                         TCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAA                                 <  SRR4302543.604426/94‑1 (MQ=60)
                                                          CTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAG                                >  SRR4302543.4967948/1‑94 (MQ=60)
                                                            CAACCGGCACGGCAGAGGTTTTCATAACCGCCCGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGA                              <  SRR4302543.1694040/94‑1 (MQ=60)
                                                            CAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGA                              >  SRR4302543.2988761/1‑94 (MQ=60)
                                                             AACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAA                             <  SRR4302543.560116/94‑1 (MQ=60)
                                                              ACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACGCTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAG                            <  SRR4302543.6904774/94‑1 (MQ=60)
                                                              ACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAG                            <  SRR4302543.7894795/94‑1 (MQ=60)
                                                              ACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGACAAAGGTTGTTCGAAGGAAG                            >  SRR4302543.6249621/1‑94 (MQ=60)
                                                               CCGGCACGGCATAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGC                           <  SRR4302543.4661964/94‑1 (MQ=60)
                                                               CCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGC                           <  SRR4302543.4661962/94‑1 (MQ=60)
                                                                CGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCG                          <  SRR4302543.5721155/94‑1 (MQ=60)
                                                                CGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCG                          <  SRR4302543.3510122/94‑1 (MQ=60)
                                                                    ACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCA                      <  SRR4302543.2392939/94‑1 (MQ=60)
                                                                    ACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCA                      >  SRR4302543.4403438/1‑94 (MQ=60)
                                                                      GGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACA                    >  SRR4302543.1861356/1‑94 (MQ=60)
                                                                       GCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACAT                   >  SRR4302543.4696733/1‑94 (MQ=60)
                                                                       GCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACAT                   >  SRR4302543.3587562/1‑94 (MQ=60)
                                                                       GCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACAT                   <  SRR4302543.4989887/94‑1 (MQ=60)
                                                                        CAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATT                  >  SRR4302543.6581128/1‑94 (MQ=60)
                                                                        CAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATT                  >  SRR4302543.6581129/1‑94 (MQ=60)
                                                                        CAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATT                  >  SRR4302543.982381/1‑94 (MQ=60)
                                                                        CAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATT                  >  SRR4302543.2898609/1‑94 (MQ=60)
                                                                        CAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATT                  <  SRR4302543.3173258/94‑1 (MQ=60)
                                                                         AGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTG                 >  SRR4302543.86693/1‑94 (MQ=60)
                                                                         AGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTG                 >  SRR4302543.6242422/1‑94 (MQ=60)
                                                                            GGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTG              <  SRR4302543.4820570/94‑1 (MQ=60)
                                                                            GGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTG              <  SRR4302543.1479542/94‑1 (MQ=60)
                                                                            GGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTG              >  SRR4302543.5705074/1‑94 (MQ=60)
                                                                              TTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTC            <  SRR4302543.3151208/94‑1 (MQ=60)
                                                                              TTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTC            <  SRR4302543.641421/94‑1 (MQ=60)
                                                                                 TCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAG         <  SRR4302543.7387800/94‑1 (MQ=60)
                                                                                 TCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAG         <  SRR4302543.7747674/94‑1 (MQ=60)
                                                                                   ATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTG       >  SRR4302543.3873775/1‑94 (MQ=60)
                                                                                   ATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTG       <  SRR4302543.7323501/94‑1 (MQ=60)
                                                                                   ATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTG       >  SRR4302543.2501213/1‑94 (MQ=60)
                                                                                   ATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTG       >  SRR4302543.2488065/1‑94 (MQ=60)
                                                                                   ATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTG       >  SRR4302543.2261806/1‑94 (MQ=60)
                                                                                        CGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTT  >  SRR4302543.7851082/1‑94 (MQ=60)
                                                                                        |                                                                                             
CCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATTTT  >  NC_000913/1931251‑1931432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑