Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,931,339 |
C→T |
A430A (GCG→GCA) |
edd ← |
6‑phosphogluconate dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,931,339 | 0 | C | T | 100.0%
| 422.0
/ NA
| 116 | A430A (GCG→GCA) | edd | 6‑phosphogluconate dehydratase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (56/60); total (56/60) |
Only 100 of 117 total aligned reads displayed.
GGCCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGT > NC_000913/1931249‑1931426
|
ggCCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGc < 2:3147278/93‑1 (MQ=255)
ggCCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGc > 2:2333658/1‑93 (MQ=255)
ggCCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGCTCTCAACCGGCACGGCAGAGGTTTTCATAACTGc > 2:774094/1‑93 (MQ=255)
gCCGGCATAACGTCATGCTGGCTTTAAAAACCAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCa < 2:3212285/93‑1 (MQ=255)
ccGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCAc > 1:1946490/1‑93 (MQ=255)
gCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGc < 2:270195/93‑1 (MQ=255)
gCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGc > 2:1497364/1‑93 (MQ=255)
aTAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGccc < 1:322865/93‑1 (MQ=255)
aaCGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAg < 2:2069591/93‑1 (MQ=255)
aCGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCACCCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAgg < 1:471844/93‑1 (MQ=255)
gTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGtt > 1:469774/1‑93 (MQ=255)
gTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGtt > 1:4290808/1‑93 (MQ=255)
gTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGtt > 2:3519203/1‑93 (MQ=255)
cATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTAc > 2:867451/1‑93 (MQ=255)
cATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTAc > 1:2094132/1‑93 (MQ=255)
aTGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTAcc > 1:569998/1‑93 (MQ=255)
aTGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTAcc > 1:187385/1‑93 (MQ=255)
aTGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTAcc > 2:1554562/1‑93 (MQ=255)
aTGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTAcc < 1:136516/93‑1 (MQ=255)
tGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGCTTTCATAACTGCACGGCCCAGGTTACCg > 2:3323905/1‑93 (MQ=255)
gCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGc < 1:3042844/93‑1 (MQ=255)
cTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCt < 1:282541/93‑1 (MQ=255)
cTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCt > 1:3586028/1‑93 (MQ=255)
gCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCttta > 2:2544919/1‑91 (MQ=255)
gCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTaa < 2:3659776/93‑1 (MQ=255)
gCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTaa > 1:915642/1‑93 (MQ=255)
gCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTaa > 2:3266471/1‑93 (MQ=255)
cTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAac > 1:103900/1‑93 (MQ=255)
cTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAac < 1:4496961/93‑1 (MQ=255)
ttCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAacac < 1:2847040/93‑1 (MQ=255)
tCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACt < 1:3465427/93‑1 (MQ=255)
aaaaaCAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACttt > 1:2090836/1‑93 (MQ=255)
aaaaCAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACtttt > 2:480138/1‑93 (MQ=255)
aaaaCAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGATACCGCTTAACACtttt > 1:377990/1‑93 (MQ=255)
aaaCAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTg < 1:1703434/93‑1 (MQ=255)
aaaCAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTg < 1:1239506/93‑1 (MQ=255)
aacaacCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGt > 2:3450732/1‑93 (MQ=255)
caacCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTct < 2:1825899/93‑2 (MQ=255)
caacCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTcc > 1:1346763/1‑93 (MQ=255)
acCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCcca < 1:1261389/93‑1 (MQ=255)
ccGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCccac > 1:4206816/1‑93 (MQ=255)
tGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCatg > 2:2693409/1‑93 (MQ=255)
gcgcTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCatgat < 2:2972152/93‑1 (MQ=255)
cgcTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCatgatg < 1:4572985/93‑1 (MQ=255)
gcTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCAtgatga > 1:2774396/1‑93 (MQ=255)
ttCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATgaga > 1:4501451/1‑93 (MQ=255)
aaTCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGaa > 1:383269/1‑93 (MQ=255)
aTCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGaaa < 2:40717/93‑1 (MQ=255)
tCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAg > 1:3486455/1‑93 (MQ=255)
tCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAg > 2:3716421/1‑93 (MQ=255)
cACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAgg < 2:203957/93‑1 (MQ=255)
aCCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgt < 2:3158215/93‑1 (MQ=255)
aCCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgt > 1:3184744/1‑93 (MQ=255)
ccTGGTTCTCCACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgtt < 2:83275/93‑1 (MQ=255)
cTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgttg < 2:1105487/93‑1 (MQ=255)
cTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgttg > 2:70871/1‑93 (MQ=255)
tGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgttgt > 2:3439455/1‑93 (MQ=255)
tGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgttgt > 2:661520/1‑93 (MQ=255)
tGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgttgt < 2:221385/93‑1 (MQ=255)
tGGTGCTCATCCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGgttgt < 2:1513042/93‑1 (MQ=255)
gTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTc > 1:1085394/1‑93 (MQ=255)
gTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTc > 2:3971715/1‑93 (MQ=255)
gTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTc < 1:2933038/93‑1 (MQ=255)
ttCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGCGAGAAAGGTTGTTCg > 1:4118128/1‑93 (MQ=255)
ctcAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCGCCATGATGAGAGAAAGGTTGTTCgaa < 2:4592695/93‑1 (MQ=255)
ctcAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCgaa < 1:4686955/93‑1 (MQ=255)
ctcAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCgaa < 1:4669019/93‑1 (MQ=255)
aaCCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCgaagga > 2:4156684/1‑93 (MQ=255)
aCCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCgaaggaa < 1:181314/93‑1 (MQ=255)
ccGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCgaaggaag < 2:1838816/93‑1 (MQ=255)
cggcacggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGc < 2:1586964/93‑1 (MQ=255)
cggcacggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGc < 2:72065/93‑1 (MQ=255)
cggcacggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGc < 2:579628/93‑1 (MQ=255)
cggcacggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGc > 2:3468385/1‑93 (MQ=255)
ggcacggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCg > 2:1981700/1‑93 (MQ=255)
cacggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGAt < 1:2165351/93‑1 (MQ=255)
cacggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGAt < 1:626689/93‑1 (MQ=255)
acggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATc > 1:1690130/1‑93 (MQ=255)
acggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATc < 1:766808/93‑1 (MQ=255)
cggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATca < 1:2748603/93‑1 (MQ=255)
ggcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGCTGTTCGAAGGAAGCGATcac > 2:19931/1‑93 (MQ=255)
gcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATcaca < 1:2975214/93‑1 (MQ=255)
gcaGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATcaca > 1:2885875/1‑93 (MQ=255)
caGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACAt > 2:62447/1‑93 (MQ=255)
agagGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACAtt < 2:249271/93‑1 (MQ=255)
agagGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACAtt > 1:1771989/1‑93 (MQ=255)
gagGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTg > 1:3546642/1‑93 (MQ=255)
agGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGc < 1:2242993/93‑1 (MQ=255)
ggTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCt < 2:4353267/93‑1 (MQ=255)
ggTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCt < 2:85666/93‑1 (MQ=255)
gTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTg > 2:4277871/1‑93 (MQ=255)
tttCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTc < 1:494836/93‑1 (MQ=255)
tttCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTc > 1:1744749/1‑93 (MQ=255)
ttCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCg < 1:944111/93‑1 (MQ=255)
tCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGa < 1:2718583/93‑1 (MQ=255)
tCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGa < 1:483149/93‑1 (MQ=255)
tCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAACGATCACATTGCTGTCGa < 1:230211/93‑1 (MQ=255)
aTAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAgg > 2:3445862/1‑92 (MQ=255)
aTAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGt > 1:688040/1‑93 (MQ=255)
aTAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGt < 1:279658/93‑1 (MQ=255)
|
GGCCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGT > NC_000913/1931249‑1931426
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATT > NC_000913/1931250‑1931430
|
GCCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCAC > SRR4302535.1960500/1‑94 (MQ=60)
CCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACG < SRR4302535.2492847/94‑1 (MQ=60)
ATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCA < SRR4302535.325097/94‑1 (MQ=60)
ACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCACCCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGT < SRR4302535.475148/94‑1 (MQ=60)
CGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTT > SRR4302535.4320155/1‑94 (MQ=60)
CGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTT > SRR4302535.473059/1‑94 (MQ=60)
TCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTAC > SRR4302535.2109230/1‑94 (MQ=60)
CATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACC > SRR4302535.188680/1‑94 (MQ=60)
CATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACC > SRR4302535.574000/1‑94 (MQ=60)
ATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCG < SRR4302535.137469/94‑1 (MQ=60)
GCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCT < SRR4302535.3064165/94‑1 (MQ=60)
GCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCT > SRR4302535.3610903/1‑94 (MQ=60)
CTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTT < SRR4302535.284511/94‑1 (MQ=60)
CTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTT < SRR4302535.4685527/94‑1 (MQ=60)
TGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTA < SRR4302535.935587/94‑1 (MQ=60)
GGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAA > SRR4302535.922143/1‑94 (MQ=60)
GCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAAC > SRR4302535.104636/1‑94 (MQ=60)
CTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACA < SRR4302535.4527835/94‑1 (MQ=60)
TTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACT < SRR4302535.2867221/94‑1 (MQ=60)
TCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTT < SRR4302535.3489511/94‑1 (MQ=60)
CAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTT > SRR4302535.2105904/1‑94 (MQ=60)
AAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGATACCGCTTAACACTTTT > SRR4302535.380610/1‑94 (MQ=60)
AAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGT < SRR4302535.195138/94‑1 (MQ=60)
AAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGT < SRR4302535.1715749/94‑1 (MQ=60)
AAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGT < SRR4302535.1248354/94‑1 (MQ=60)
ACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCC > SRR4302535.1356378/1‑94 (MQ=60)
GCCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCAC > SRR4302535.4235606/1‑94 (MQ=60)
ACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCAC < SRR4302535.1270414/94‑1 (MQ=60)
GGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGAT > SRR4302535.2897998/1‑94 (MQ=60)
CGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGA < SRR4302535.4604159/94‑1 (MQ=60)
CGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGA > SRR4302535.2794149/1‑94 (MQ=60)
CTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGA > SRR4302535.4532364/1‑94 (MQ=60)
CAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAA > SRR4302535.385923/1‑94 (MQ=60)
ATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAG > SRR4302535.3510660/1‑94 (MQ=60)
TCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGG > SRR4302535.4143607/1‑94 (MQ=60)
CACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGT > SRR4302535.3206759/1‑94 (MQ=60)
GGTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTC > SRR4302535.1093108/1‑94 (MQ=60)
GTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGCGAGAAAGGTTGTTCG > SRR4302535.4146313/1‑94 (MQ=60)
GTTCTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCG < SRR4302535.2953684/94‑1 (MQ=60)
CTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAG < SRR4302535.4718757/94‑1 (MQ=60)
CTCAACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAG < SRR4302535.4700562/94‑1 (MQ=60)
ACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAG < SRR4302535.557824/94‑1 (MQ=60)
ACCGGCACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAG < SRR4302535.182572/94‑1 (MQ=60)
CACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATC > SRR4302535.1702362/1‑94 (MQ=60)
CACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATC < SRR4302535.631050/94‑1 (MQ=60)
CACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATC < SRR4302535.2180877/94‑1 (MQ=60)
ACGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCA < SRR4302535.772207/94‑1 (MQ=60)
CGGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCAC < SRR4302535.2768197/94‑1 (MQ=60)
GGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACA > SRR4302535.3384728/1‑94 (MQ=60)
GGCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACA > SRR4302535.2906293/1‑94 (MQ=60)
GCAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACAT < SRR4302535.2996093/94‑1 (MQ=60)
CAGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATT > SRR4302535.1784829/1‑94 (MQ=60)
AGAGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTG > SRR4302535.3571266/1‑94 (MQ=60)
AGGTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCT < SRR4302535.2258946/94‑1 (MQ=60)
GTTTTCATAACTGCACGGCCCAGGTTACCGCTTAACGCTTTTGTCCCACCATGATGAGAGAAAGGCTGTTCGAAGGAAGCGATCACATTGCTGT > SRR4302535.1426810/1‑94 (MQ=60)
TTTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTC > SRR4302535.1757374/1‑94 (MQ=60)
TTTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCG < SRR4302535.498308/94‑1 (MQ=60)
TTCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGA < SRR4302535.950794/94‑1 (MQ=60)
TCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAG < SRR4302535.2737999/94‑1 (MQ=60)
TCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAG < SRR4302535.486537/94‑1 (MQ=60)
TCATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAACGATCACATTGCTGTCGAG < SRR4302535.231799/94‑1 (MQ=60)
CATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGT > SRR4302535.692859/1‑94 (MQ=60)
ATAACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTG < SRR4302535.281609/94‑1 (MQ=60)
ACTGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATT < SRR4302535.4547581/94‑1 (MQ=60)
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GCCGGCATAACGTCATGCTGGCTTTCAAAAACAACCGCTGGCGCTTCAATCACCTGGTTCTCAACCGGCACGGCAGAGGTTTTCATAACCGCACGGCCCAGGTTACCGCTTAACACTTTTGTCCCACCATGATGAGAGAAAGGTTGTTCGAAGGAAGCGATCACATTGCTGTCGAGTGATT > NC_000913/1931250‑1931430
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
