Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,934,482 |
T→C |
intergenic (‑144/‑194) |
zwf ← / → yebK |
glucose‑6‑phosphate dehydrogenase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,934,482 | 0 | T | C | 100.0%
| 399.1
/ NA
| 126 | intergenic (‑144/‑194) | zwf/yebK | glucose‑6‑phosphate dehydrogenase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (55/71); total (55/71) |
Only 100 of 135 total aligned reads displayed.
TTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGTGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTAT > NC_000913/1934392‑1934571
|
ttttCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAgcgc > 2:1607661/1‑93 (MQ=255)
tttCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGcgcg < 1:2643631/93‑1 (MQ=255)
tttCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGcgcg > 2:4522482/1‑93 (MQ=255)
tCTTCCGGTGCACTGTACTGCTTGTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGc < 2:2090611/93‑1 (MQ=255)
tCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGc < 2:1072039/93‑1 (MQ=255)
ttACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCaa > 1:978655/1‑93 (MQ=255)
ttACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCaa > 1:1542753/1‑93 (MQ=255)
aCGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCaaaa < 2:1430692/93‑1 (MQ=255)
cGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAAc < 1:334516/93‑1 (MQ=255)
gatGCACGGTACTGCTTTCACGATCTTGCCAAAACTGAAAACGCTTATCCACCCGTCCGATCACGGAAAAAGCGCGCAAAGCGAGGAAAAACt < 2:3555488/91‑1 (MQ=255)
tGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGa > 1:199329/1‑93 (MQ=255)
tGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGa < 1:150924/93‑1 (MQ=255)
gCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGAt < 2:1895872/93‑1 (MQ=255)
gCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGAt > 2:3286769/1‑93 (MQ=255)
cACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATa < 1:3436877/93‑1 (MQ=255)
aCTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATaa > 1:3788445/1‑93 (MQ=255)
aCTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATaa > 1:2189475/1‑93 (MQ=255)
cTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATaaa < 1:4524049/93‑1 (MQ=255)
tGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATaaaa > 1:1940159/1‑93 (MQ=255)
gTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATaaaaa < 2:2635081/93‑1 (MQ=255)
aCTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATaaaaaaa > 1:635706/1‑93 (MQ=255)
aCTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATaaaaaaa > 1:1219996/1‑93 (MQ=255)
cTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAat > 2:1232632/1‑93 (MQ=255)
cTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAat < 1:4152523/93‑1 (MQ=255)
cTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAat < 1:2732685/93‑1 (MQ=255)
cTGCTTGTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAat < 1:4228787/93‑1 (MQ=255)
tcTTTTACGAGCTTGCGAAAACTGTAACCGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAatca < 1:2770223/92‑1 (MQ=255)
gCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAACatca > 1:3002238/1‑93 (MQ=255)
gCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAatca < 2:3781338/93‑1 (MQ=255)
ttttACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAatcatc > 1:2176757/1‑93 (MQ=255)
ttttACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAatcatc > 1:3435910/1‑93 (MQ=255)
ttttACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACAGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAatcatc > 1:2182668/1‑93 (MQ=255)
tACGAGCTTGCGAAATCTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGtt < 1:3438513/93‑1 (MQ=255)
tACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGtt < 2:1156333/93‑1 (MQ=255)
aCGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGttt < 2:4399668/93‑1 (MQ=255)
cGAGCTTGCGAAAACTGTAAACGCTTATCCCCCCGTGCGATTACGGGAAAGGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGtttt < 2:1301392/93‑1 (MQ=255)
cGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGtttt > 1:4415520/1‑93 (MQ=255)
gAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTc > 2:1558831/1‑93 (MQ=255)
aGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTcc > 2:4532819/1‑93 (MQ=255)
aGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAACCGCGGCAAAACTGATAAAAAAATCATCGTTTTcc < 2:3538395/93‑1 (MQ=255)
gCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCa > 1:3383616/1‑93 (MQ=255)
gCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCa < 2:4274626/93‑1 (MQ=255)
gCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGAGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATTGTTTTCCa > 2:3993219/1‑93 (MQ=255)
cTTGCGAAGACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCAt > 2:3317513/1‑93 (MQ=255)
cTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCAt < 1:2548298/93‑1 (MQ=255)
cTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCAt > 2:4378928/1‑93 (MQ=255)
ttGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCAtt < 2:1769114/93‑1 (MQ=255)
ttGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCAtt < 2:4091437/93‑1 (MQ=255)
ttGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCAtt < 1:1057897/93‑1 (MQ=255)
tGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTg < 2:1714461/93‑1 (MQ=255)
gAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCGAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGt > 2:77902/1‑93 (MQ=255)
aaCTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCCAAACTGATAAAAAAATCATCGTTTTCCATTGGGTaaa > 1:3243630/1‑93 (MQ=255)
aaCTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTaaa > 1:1643043/1‑93 (MQ=255)
aaCTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATAGTTTTCCATTGGGTaaa > 2:949688/1‑93 (MQ=255)
aCTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTaaaa < 1:2963230/93‑1 (MQ=255)
aCTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTaaaa > 1:2459483/1‑93 (MQ=255)
cTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTaaaaa > 2:3107629/1‑93 (MQ=255)
cTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTaaaaa < 1:4454154/93‑1 (MQ=255)
cTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTaaaaa < 2:1382310/93‑1 (MQ=255)
tGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAAt > 2:4534667/1‑93 (MQ=255)
gTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATc > 1:1649260/1‑93 (MQ=255)
tAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTaaaaaatc > 2:2295731/1‑90 (MQ=255)
tAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCt > 1:2353264/1‑93 (MQ=255)
aaaCGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTg > 2:3899605/1‑93 (MQ=255)
aaCGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGa > 1:4471024/1‑93 (MQ=255)
aCGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGac > 1:3858440/1‑93 (MQ=255)
aCGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGac > 1:1789306/1‑93 (MQ=255)
cGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGaca < 2:2051427/93‑1 (MQ=255)
gCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGacac > 1:4217062/1‑93 (MQ=255)
gCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGacac < 2:3985929/93‑1 (MQ=255)
gCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGacac < 2:3284612/93‑1 (MQ=255)
cTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACt < 1:554911/93‑1 (MQ=255)
tATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGa < 2:1718441/93‑1 (MQ=255)
ccACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCa < 1:76289/93‑1 (MQ=255)
ccACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCa < 1:245035/93‑1 (MQ=255)
cACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCAt > 2:4170707/1‑93 (MQ=255)
cGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTa < 2:4125299/93‑1 (MQ=255)
tGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATg > 1:3731711/1‑93 (MQ=255)
gATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGaaa < 2:1121281/93‑1 (MQ=255)
aTTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGaaaa < 1:3501801/93‑1 (MQ=255)
tACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCAGACACTGATCATGTTATGaaaaaa < 1:1646133/93‑1 (MQ=255)
aCGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGaaaaaaa < 2:1522604/93‑1 (MQ=255)
cGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGaaaaaaaa < 1:2020872/93‑1 (MQ=255)
gggAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAAt < 1:176533/93‑1 (MQ=255)
gggAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGAAACTGATCATGTTATGAAAAAAAAt > 1:1547524/1‑93 (MQ=255)
gAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATaa < 2:3697845/93‑1 (MQ=255)
aaaGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATaaca > 2:4462880/1‑93 (MQ=255)
aaaGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATaaca < 2:3341063/93‑1 (MQ=255)
aaGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATaacaa < 1:3359777/93‑1 (MQ=255)
cgcgcAAAGCTCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACtt < 1:1340934/93‑1 (MQ=255)
gcgcAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACttt < 1:1708800/93‑1 (MQ=255)
gcgcAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACttt > 1:3139943/1‑93 (MQ=255)
gcAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACttttt > 1:4269993/1‑93 (MQ=255)
gcAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACttttt > 1:2653795/1‑93 (MQ=255)
gcAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACttttt > 2:2495936/1‑93 (MQ=255)
aaaGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTa < 1:2463627/93‑1 (MQ=255)
aaaGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTa < 1:3274371/93‑1 (MQ=255)
aaGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTAt < 1:4290962/93‑1 (MQ=255)
aaGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTAt > 2:3673048/1‑93 (MQ=255)
aaGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTAt > 1:3561837/1‑93 (MQ=255)
|
TTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGTGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTAT > NC_000913/1934392‑1934571
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGTGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTATC > NC_000913/1934389‑1934572
|
TAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGC < SRR4302535.1481784/94‑1 (MQ=60)
AATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCG > SRR4302535.4195386/1‑94 (MQ=60)
TGTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCG < SRR4302535.4468781/94‑1 (MQ=60)
TTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGG < SRR4302535.2662565/94‑1 (MQ=60)
CTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAA > SRR4302535.985613/1‑94 (MQ=60)
CTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAA > SRR4302535.2472086/1‑94 (MQ=60)
CTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAA > SRR4302535.1553872/1‑94 (MQ=60)
CGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACT < SRR4302535.336831/94‑1 (MQ=60)
GTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGA > SRR4302535.200694/1‑94 (MQ=60)
TGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGAT < SRR4302535.151981/94‑1 (MQ=60)
GCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATA < SRR4302535.3481853/94‑1 (MQ=60)
CACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAA < SRR4302535.3460782/94‑1 (MQ=60)
CACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAA > SRR4302535.3814575/1‑94 (MQ=60)
CACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAA > SRR4302535.2205066/1‑94 (MQ=60)
ACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAA < SRR4302535.2634035/94‑1 (MQ=60)
CTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAA < SRR4302535.4555044/94‑1 (MQ=60)
CTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAA > SRR4302535.1954136/1‑94 (MQ=60)
GTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAA > SRR4302535.3459737/1‑94 (MQ=60)
TACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAA > SRR4302535.1228743/1‑94 (MQ=60)
TACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAA > SRR4302535.640141/1‑94 (MQ=60)
CTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATC < SRR4302535.4180956/94‑1 (MQ=60)
CTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATC < SRR4302535.2752190/94‑1 (MQ=60)
CTGCTTGTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATC < SRR4302535.4257726/94‑1 (MQ=60)
TGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAACATCA > SRR4302535.3023284/1‑94 (MQ=60)
TCTTTTACGAGCTTGCGAAAACTGTAACCGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCAT < SRR4302535.2789951/94‑1 (MQ=60)
GCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCAT > SRR4302535.1879726/1‑94 (MQ=60)
CTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATC > SRR4302535.2192313/1‑94 (MQ=60)
CTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATC > SRR4302535.4152211/1‑94 (MQ=60)
CTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATC > SRR4302535.3459790/1‑94 (MQ=60)
CTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACAGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATC > SRR4302535.2198231/1‑94 (MQ=60)
TACGAGCTTGCGAAATCTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTT < SRR4302535.3462430/94‑1 (MQ=60)
TACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTT < SRR4302535.4293867/94‑1 (MQ=60)
ACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTT > SRR4302535.4445740/1‑94 (MQ=60)
AGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCA > SRR4302535.3407137/1‑94 (MQ=60)
CTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATT < SRR4302535.2566635/94‑1 (MQ=60)
TTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTG < SRR4302535.1065422/94‑1 (MQ=60)
TTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTG < SRR4302535.2767256/94‑1 (MQ=60)
AAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCCAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAA > SRR4302535.3266161/1‑94 (MQ=60)
AAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAA > SRR4302535.1654921/1‑94 (MQ=60)
AACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAA > SRR4302535.2477218/1‑94 (MQ=60)
AACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAA < SRR4302535.335102/94‑1 (MQ=60)
ACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAA < SRR4302535.2984030/94‑1 (MQ=60)
ACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAA > SRR4302535.1643694/1‑94 (MQ=60)
CTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAAT < SRR4302535.4484700/94‑1 (MQ=60)
TGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATC > SRR4302535.1661189/1‑94 (MQ=60)
GTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCT > SRR4302535.84268/1‑94 (MQ=60)
GTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCT > SRR4302535.2370138/1‑94 (MQ=60)
AAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGA > SRR4302535.4501705/1‑94 (MQ=60)
AACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGAC > SRR4302535.1802248/1‑94 (MQ=60)
AACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGAC > SRR4302535.3884997/1‑94 (MQ=60)
CGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACAC > SRR4302535.4245918/1‑94 (MQ=60)
CTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTG < SRR4302535.558800/94‑1 (MQ=60)
CCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCAT < SRR4302535.76843/94‑1 (MQ=60)
CCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCAT < SRR4302535.1670702/94‑1 (MQ=60)
CCACCCGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCAT < SRR4302535.246714/94‑1 (MQ=60)
CGTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTAT > SRR4302535.541877/1‑94 (MQ=60)
GTGCGATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATG > SRR4302535.3757550/1‑94 (MQ=60)
GATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAA > SRR4302535.2069846/1‑94 (MQ=60)
ATTACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAA < SRR4302535.3526145/94‑1 (MQ=60)
TTACGGGAAAAGCGCGCAAAGCGCGGCAAACCTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAA < SRR4302535.3151128/94‑1 (MQ=60)
TACGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCAGACACTGATCATGTTATGAAAAAAA < SRR4302535.1658027/94‑1 (MQ=60)
CGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAAT < SRR4302535.2035440/94‑1 (MQ=60)
CGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAAT < SRR4302535.2337439/94‑1 (MQ=60)
CGGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGAAACTGATCATGTTATGAAAAAAAAT > SRR4302535.1558670/1‑94 (MQ=60)
GGGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATA < SRR4302535.177760/94‑1 (MQ=60)
GGAAAAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAA > SRR4302535.3695675/1‑94 (MQ=60)
AAGCGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAAC < SRR4302535.3383162/94‑1 (MQ=60)
CGCGCAAAGCTCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTT < SRR4302535.1350499/94‑1 (MQ=60)
CGCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTT > SRR4302535.3161792/1‑94 (MQ=60)
GCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTT < SRR4302535.1721154/94‑1 (MQ=60)
GCGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTT < SRR4302535.1472088/94‑1 (MQ=60)
CGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTT > SRR4302535.4299227/1‑94 (MQ=60)
CGCAAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTT > SRR4302535.2672808/1‑94 (MQ=60)
AAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTAT > SRR4302535.3586534/1‑94 (MQ=60)
AAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTAT < SRR4302535.3297115/94‑1 (MQ=60)
AAAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTAT < SRR4302535.2481391/94‑1 (MQ=60)
AAGCGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTATC < SRR4302535.4320327/94‑1 (MQ=60)
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TAATTTTCTTACGGTGCACTGTACTGCTTTTACGAGCTTGCGAAAACTGTAAACGCTTATCCACCCGTGCGATTACGGGAAAAGCGCGCAAAGTGCGGCAAAACTGATAAAAAAATCATCGTTTTCCATTGGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAATAACAACTTTTTTATC > NC_000913/1934389‑1934572
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
