Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,938,811 |
T→C |
G262G (GGA→GGG) |
yebA ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,938,811 | 0 | T | C | 100.0%
| 359.4
/ NA
| 114 | G262G (GGA→GGG) | yebA | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (55/59); total (55/59) |
Only 100 of 118 total aligned reads displayed.
TGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAC > NC_000913/1938721‑1938899
|
tggtgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAAccc < 1:2907068/93‑1 (MQ=255)
gggtgCAGCGCGACCGGTCACCGGATTAGTACGACGCGGGTCAAAAGTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAAccc < 1:2341723/92‑1 (MQ=255)
ggtgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCt > 2:866552/1‑93 (MQ=255)
ggtgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCt > 1:270528/1‑93 (MQ=255)
gtgCACCGCGACCGGTCACCGGATCAGTACGACGCGGGTGAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCtt < 2:3915660/93‑1 (MQ=255)
tgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCttt < 2:2085876/93‑1 (MQ=255)
tgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCttt < 1:4253320/93‑1 (MQ=255)
tgCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCttt < 1:3936829/93‑1 (MQ=255)
gCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTc < 1:4448008/93‑1 (MQ=255)
cAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCg < 2:2992445/93‑1 (MQ=255)
gcgACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAg < 2:3212815/93‑1 (MQ=255)
cgACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGa > 2:898322/1‑93 (MQ=255)
gACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGAc > 1:1535635/1‑93 (MQ=255)
aCCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGAcc > 2:2537048/1‑93 (MQ=255)
ccGGTCACAGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCa < 1:567778/93‑1 (MQ=255)
ggTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGt > 2:2320394/1‑93 (MQ=255)
ggTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGt < 1:386128/93‑1 (MQ=255)
cgTCCCCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGt < 1:3402077/92‑1 (MQ=255)
gTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTa < 1:1669590/93‑1 (MQ=255)
gTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTa < 2:2715989/93‑1 (MQ=255)
tCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAc > 1:2609290/1‑93 (MQ=255)
tCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAc > 2:1808916/1‑93 (MQ=255)
cGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGtt > 1:2563653/1‑93 (MQ=255)
cGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGtt > 2:1031563/1‑93 (MQ=255)
ggATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTa < 2:2061244/93‑1 (MQ=255)
gATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTAc < 1:2860891/93‑1 (MQ=255)
gATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTAc > 2:3485993/1‑93 (MQ=255)
ttAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGCACAGTACCGTTGCGa > 1:359307/1‑93 (MQ=255)
ttAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGa < 2:849926/93‑1 (MQ=255)
ttAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGa > 2:1362431/1‑93 (MQ=255)
cgacgCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAg > 2:3821873/1‑93 (MQ=255)
acgCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGaa < 2:3198517/93‑1 (MQ=255)
acgCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGaa < 2:1569278/93‑1 (MQ=255)
gcgGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAAtt < 1:3570077/93‑1 (MQ=255)
cgGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAAttt < 2:4347824/93‑1 (MQ=255)
ggTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGc > 2:2490599/1‑93 (MQ=255)
ttAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCa > 2:474356/1‑93 (MQ=255)
ttAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCa > 1:4200116/1‑93 (MQ=255)
taaaTTAGACGAGACACGGACCTGTTTCGCCATCGGGCATCGCAAGACCCCTTTCTCCAGACCAGTACCGTTACGATCGTAGTATTTGCCATc < 2:4646532/92‑1 (MQ=255)
aaaaTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATc < 2:350189/93‑1 (MQ=255)
aaaaTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATc < 2:3146671/93‑1 (MQ=255)
aaaTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCt < 2:1983973/93‑1 (MQ=255)
aaTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCtt > 1:676760/1‑93 (MQ=255)
aTTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTc > 1:898096/1‑93 (MQ=255)
ttAGACGAGATACGGACCTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCa < 1:1253911/93‑1 (MQ=255)
ttAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCa < 2:319336/93‑1 (MQ=255)
ttAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCa > 1:145724/1‑93 (MQ=255)
ttAGACGAGAGACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCa < 1:1731414/93‑1 (MQ=255)
tAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCATGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAg > 1:3227048/1‑93 (MQ=255)
tAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAg > 1:4492057/1‑93 (MQ=255)
aGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAgc < 2:2014001/93‑1 (MQ=255)
aGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAgc < 2:1184285/93‑1 (MQ=255)
gACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAgcg > 2:1591592/1‑93 (MQ=255)
gagaTACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGGTACGATCGTAGAATTTGCCATCTTCAGAGCgg > 2:2614899/1‑93 (MQ=255)
gaTACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGAt > 1:2818379/1‑93 (MQ=255)
aTACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATa < 1:3015949/93‑1 (MQ=255)
tACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAg > 1:1459024/1‑93 (MQ=255)
aCGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGc < 1:1209200/93‑1 (MQ=255)
cGGAGCTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCg < 2:4068944/93‑1 (MQ=255)
ggAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGt < 2:2352543/93‑1 (MQ=255)
ggAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGt > 2:985953/1‑93 (MQ=255)
ggAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGt < 2:3141396/93‑1 (MQ=255)
aCTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGAGCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaat > 1:3431809/1‑93 (MQ=255)
cTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaata > 2:78847/1‑93 (MQ=255)
tGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaataa < 1:3967347/93‑1 (MQ=255)
tGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCAATCTTCAGCGCGGATAGCGtaataa > 1:589840/1‑93 (MQ=255)
tGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTAAGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGtaataa > 1:764657/1‑93 (MQ=255)
gTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTaataat < 2:57304/93‑1 (MQ=255)
gTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTaataat < 2:3388476/93‑1 (MQ=255)
gTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTaataat < 1:4521959/93‑1 (MQ=255)
tCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCtt < 1:1845899/93‑1 (MQ=255)
tCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCtt < 2:2389490/93‑1 (MQ=255)
cGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCttt < 2:3303122/93‑1 (MQ=255)
gCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTa > 1:4415021/1‑93 (MQ=255)
ccGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTAc > 1:1954114/1‑93 (MQ=255)
ccGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTAAGCGCGGATAGCGTAATAATCTTTAc > 1:974755/1‑93 (MQ=255)
cGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTAcc < 1:1218908/93‑1 (MQ=255)
gTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCt < 1:3427999/93‑1 (MQ=255)
tCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCtt > 2:338570/1‑93 (MQ=255)
tCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCtt < 1:4384057/93‑1 (MQ=255)
tCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCtt > 1:3610158/1‑93 (MQ=255)
cGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTc < 2:2767941/93‑1 (MQ=255)
cGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTc < 2:190216/93‑1 (MQ=255)
cGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTc < 2:1734416/93‑1 (MQ=255)
ggAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTg < 2:1451921/93‑1 (MQ=255)
gAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGa > 1:681047/1‑93 (MQ=255)
gAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGa < 2:1102670/93‑1 (MQ=255)
aTCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAAc < 2:4331583/93‑1 (MQ=255)
tCGCAAGAACCCTTTCGCCAGACCAGTAACGTTACGATCGTAGACTTTGCCATCTTCAGCGCGGATAACGTAATAATCTTTACCTTCTGAACg > 1:2723479/1‑93 (MQ=255)
cGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGc < 2:3765091/93‑1 (MQ=255)
cGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGc < 2:2433785/93‑1 (MQ=255)
gCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCa > 2:2075459/1‑93 (MQ=255)
gCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCa > 1:13942/1‑93 (MQ=255)
gCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCa > 2:3968541/1‑93 (MQ=255)
aaGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCaaa < 1:2925784/93‑1 (MQ=255)
aaGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCaaa > 1:3203092/1‑93 (MQ=255)
aaGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCaaa > 2:2340087/1‑93 (MQ=255)
aaGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCaaa > 1:781183/1‑93 (MQ=255)
aGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAGCGCAAAc > 2:2744719/1‑93 (MQ=255)
aGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAc > 2:665893/1‑93 (MQ=255)
|
TGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAC > NC_000913/1938721‑1938899
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACG > NC_000913/1938719‑1938904
|
TGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACC < SRR4302535.284052/94‑1 (MQ=60)
GTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCC < SRR4302535.213707/94‑1 (MQ=60)
TGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCT < SRR4302535.2927614/94‑1 (MQ=60)
TGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCT > SRR4302535.272409/1‑94 (MQ=60)
GGGTGCAGCGCGACCGGTCACCGGATTAGTACGACGCGGGTCAAAAGTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCT < SRR4302535.2358477/94‑1 (MQ=60)
TGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTC < SRR4302535.3963683/94‑1 (MQ=60)
TGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTC < SRR4302535.4282465/94‑1 (MQ=60)
GCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCG < SRR4302535.4478508/94‑1 (MQ=60)
CGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGAC > SRR4302535.1546700/1‑94 (MQ=60)
CCGGTCACAGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAG < SRR4302535.571761/94‑1 (MQ=60)
CGGTCGCCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGT < SRR4302535.363222/94‑1 (MQ=60)
CGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGT < SRR4302535.3017949/94‑1 (MQ=60)
cgtccCCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTA < SRR4302535.3425754/89‑1 (MQ=60)
GGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTA < SRR4302535.388812/94‑1 (MQ=60)
GTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAC < SRR4302535.1681670/94‑1 (MQ=60)
GTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTAC > SRR4302535.2628013/1‑94 (MQ=60)
ACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGT > SRR4302535.2487140/1‑94 (MQ=60)
CCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTT > SRR4302535.2582106/1‑94 (MQ=60)
CGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTA > SRR4302535.3288143/1‑94 (MQ=60)
GATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACG < SRR4302535.2881158/94‑1 (MQ=60)
ATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGCACAGTACCGTTGCGA > SRR4302535.361796/1‑94 (MQ=60)
TAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATC < SRR4302535.1489958/94‑1 (MQ=60)
GCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTT < SRR4302535.3594833/94‑1 (MQ=60)
GTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCA > SRR4302535.4228858/1‑94 (MQ=60)
AAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTT > SRR4302535.2864601/1‑94 (MQ=60)
AAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTT > SRR4302535.681491/1‑94 (MQ=60)
AATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTC > SRR4302535.904461/1‑94 (MQ=60)
ATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCA > SRR4302535.146740/1‑94 (MQ=60)
TTAGACGAGATACGGACCTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAG < SRR4302535.1262880/94‑1 (MQ=60)
TTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCATGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAG > SRR4302535.3249415/1‑94 (MQ=60)
TTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAG > SRR4302535.4522892/1‑94 (MQ=60)
TTAGACGAGAGACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAG < SRR4302535.1743930/94‑1 (MQ=60)
AGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGAT > SRR4302535.2838398/1‑94 (MQ=60)
ATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAG < SRR4302535.3037082/94‑1 (MQ=60)
ATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAG > SRR4302535.1469479/1‑94 (MQ=60)
ACGGAACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCG < SRR4302535.1217888/94‑1 (MQ=60)
AACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGAGCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAAT > SRR4302535.3455659/1‑94 (MQ=60)
ACTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATA < SRR4302535.4347779/94‑1 (MQ=60)
CTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCAATCTTCAGCGCGGATAGCGTAATAA > SRR4302535.593972/1‑94 (MQ=60)
CTGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTAAGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAA > SRR4302535.770044/1‑94 (MQ=60)
TGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAAT < SRR4302535.4620411/94‑1 (MQ=60)
TGTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAAT < SRR4302535.3994447/94‑1 (MQ=60)
TGTTTCACCGGCGGGAATCGCAAGACCCGTGTCGCCAGGCCAGTACCGTTTCGATCGTAGAATTTTCCATCTTCAGCGCGGATAGCGTAATAAT < SRR4302535.3461921/94‑1 (MQ=53)
GTTTCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATC < SRR4302535.4552947/94‑1 (MQ=60)
TCGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTT < SRR4302535.1859200/94‑1 (MQ=60)
CGCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTA > SRR4302535.4445237/1‑94 (MQ=60)
GCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTAC > SRR4302535.1968178/1‑94 (MQ=60)
GCCGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTAAGCGCGGATAGCGTAATAATCTTTAC > SRR4302535.981675/1‑94 (MQ=60)
CGTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCT < SRR4302535.1227650/94‑1 (MQ=60)
GTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTT < SRR4302535.3451828/94‑1 (MQ=60)
GTCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTT > SRR4302535.3635195/1‑94 (MQ=60)
TCGGGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTC < SRR4302535.4414050/94‑1 (MQ=60)
GGAATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGA > SRR4302535.685814/1‑94 (MQ=60)
AATCGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAAC < SRR4302535.839779/94‑1 (MQ=60)
ATCGCAAGAACCCTTTCGCCAGACCAGTAACGTTACGATCGTAGACTTTGCCATCTTCAGCGCGGATAACGTAATAATCTTTACCTTCTGAACG > SRR4302535.2742933/1‑94 (MQ=60)
CGCAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCA > SRR4302535.14043/1‑94 (MQ=60)
CAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAA > SRR4302535.3225271/1‑94 (MQ=60)
CAAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAA > SRR4302535.786667/1‑94 (MQ=60)
AAGAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAAC < SRR4302535.2946410/94‑1 (MQ=60)
GAACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGT > SRR4302535.3175131/1‑94 (MQ=60)
ACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTAC > SRR4302535.3411012/1‑94 (MQ=60)
ACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTAC < SRR4302535.3935151/94‑1 (MQ=60)
ACCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTAC < SRR4302535.1191399/94‑1 (MQ=60)
CCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACG > SRR4302535.2645909/1‑94 (MQ=60)
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TGTGGTGCAACGCGACCGGTCACCGGATTAGTACGACGCGGGTTAAAATTAGACGAGATACGGAACTGTTTCGCCGTCGGGAATCGCAAGAATCCTTTCGCCAGACCAGTACCGTTACGATCGTAGAATTTGCCATCTTCAGCGCGGATAGCGTAATAATCTTTACCTTCTGAACGCAAACGTACG > NC_000913/1938719‑1938904
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
