Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,942,377 |
A→G |
M335T (ATG→ACG) |
ruvB ← |
Holliday junction helicase subunit A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,942,377 | 0 | A | G | 92.6%
| 320.0
/ 13.2
| 122 | M335T (ATG→ACG) | ruvB | Holliday junction helicase subunit A |
| Reads supporting (aligned to +/- strand): ref base A (5/4); new base G (57/56); total (62/60) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.90e-01 |
Only 100 of 129 total aligned reads displayed.
CTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAAT > NC_000913/1942289‑1942465
|
ctGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTc < 2:1471574/93‑1 (MQ=255)
ctGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTc < 2:2654983/93‑1 (MQ=255)
ctGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTc < 2:749793/93‑1 (MQ=255)
ggTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTg < 2:2587191/93‑1 (MQ=255)
ggTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTg < 2:3317312/93‑1 (MQ=255)
gTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTgg > 2:2056614/1‑93 (MQ=255)
gTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTgg > 1:3714522/1‑93 (MQ=255)
tAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTggc > 2:4421093/1‑93 (MQ=255)
gTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTggcgg > 1:488865/1‑93 (MQ=255)
gTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTggcgg > 1:4356276/1‑93 (MQ=255)
tCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTggcggc > 2:2003844/1‑93 (MQ=255)
cTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGt > 2:4034615/1‑93 (MQ=255)
cTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGt < 1:4127976/93‑1 (MQ=255)
ggTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTa < 2:4439783/93‑1 (MQ=255)
gTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTAt > 2:3106601/1‑93 (MQ=255)
tAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATg > 1:2661118/1‑93 (MQ=255)
gaaGACCCGAAAAGCGGCGCATCCGGCATAATGCCAATGCCGGATGCGGCGCGAGCGACCAATCCGACTTTAGGCGTTTCTGGGGGGGTTTTg > 2:1236987/2‑93 (MQ=255)
aaGACGCGAACAGCGTCGCATCAGGCATATTTCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGc > 1:3076292/1‑93 (MQ=255)
aaGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGc < 1:1001338/93‑1 (MQ=255)
aaGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGc > 1:3073918/1‑93 (MQ=255)
gACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCa > 1:4354223/1‑93 (MQ=255)
cgcgAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCaaa < 1:3309489/93‑1 (MQ=255)
gcgAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAg < 2:306017/93‑1 (MQ=255)
gcgAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAg > 1:4134515/1‑93 (MQ=255)
gAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTg > 1:1534590/1‑93 (MQ=255)
gAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGACGGCGTTATGCCAAAGTg > 1:210492/1‑93 (MQ=255)
gaCAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGa < 2:3789384/92‑1 (MQ=255)
aaCAGCGTGGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGa > 2:3752760/1‑93 (MQ=255)
aaCAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGa < 1:2398864/93‑1 (MQ=255)
aCAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGAt < 2:1613846/93‑1 (MQ=255)
cAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGAtt > 2:4385336/1‑93 (MQ=255)
aGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTc < 2:358327/93‑1 (MQ=255)
gCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTcc > 2:2537056/1‑93 (MQ=255)
gCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTcc > 2:2594626/1‑93 (MQ=255)
gCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTcc > 2:1086455/1‑93 (MQ=255)
cGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCa < 1:3374985/93‑1 (MQ=255)
gTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCTGCGTTATGCCAAAGTGATTCCAc > 1:2294010/1‑93 (MQ=255)
gTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCAc < 1:3935274/93‑1 (MQ=255)
cATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGccc > 1:3320404/1‑93 (MQ=255)
cATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGccc < 1:3519257/93‑1 (MQ=255)
cATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGccc > 2:2207344/1‑93 (MQ=255)
cATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGccc > 2:4430221/1‑93 (MQ=255)
tCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCcgc > 1:4103006/1‑93 (MQ=255)
tCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCcgc > 1:1917221/1‑93 (MQ=255)
ggCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGcgtc < 1:163146/93‑1 (MQ=255)
ggCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGcgtc < 2:2790128/93‑1 (MQ=255)
cATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCGACGCCCGcgtcgt > 2:1608149/1‑93 (MQ=255)
cATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGcgtcgt > 1:1014889/1‑93 (MQ=255)
tatTGCCATTGCGGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACTCCCGCGtcgtcg < 2:4419865/93‑1 (MQ=255)
tatTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGtcgtcg > 1:3856670/1‑93 (MQ=255)
atTGCAAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGc > 1:1915948/1‑93 (MQ=255)
ttGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGcc > 2:1837536/1‑93 (MQ=255)
tGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCa < 2:2854828/93‑1 (MQ=255)
ccAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATa > 1:1160617/1‑93 (MQ=255)
cAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATAc > 2:2724826/1‑93 (MQ=255)
cAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATAc > 1:3472353/1‑93 (MQ=255)
gTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGc > 1:2836180/1‑93 (MQ=255)
gTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGc < 1:3004824/93‑1 (MQ=255)
tGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGcc > 1:3438835/1‑93 (MQ=255)
tGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGcc < 1:3292758/93‑1 (MQ=255)
gCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGccc < 1:2729053/93‑1 (MQ=255)
ccGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCa < 2:110162/93‑1 (MQ=255)
cGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCAc < 2:3318534/93‑1 (MQ=255)
ggATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCAcg > 1:1058137/1‑93 (MQ=255)
ggATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCAcg > 1:4652934/1‑93 (MQ=255)
gATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCAcgc > 1:1552336/1‑93 (MQ=255)
gATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCAcgc > 2:388506/1‑93 (MQ=255)
gcggcgCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGgt < 2:2486406/93‑1 (MQ=255)
gcggcgCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGgt < 2:4667879/93‑1 (MQ=255)
cgcgAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTAc > 1:258461/1‑93 (MQ=255)
cgagcgaCCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCTCACGCGGTGTACGc < 2:2863679/93‑1 (MQ=255)
gagcgaCCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTAGCCATACGCCCACGCGGTGTACGCt > 2:2234883/1‑93 (MQ=255)
gaCCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCaa > 2:2142063/1‑93 (MQ=255)
gaCCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCaa < 1:1183520/93‑1 (MQ=255)
aCCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCaaa > 1:800144/1‑93 (MQ=255)
aCCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCaaa < 2:4031505/93‑1 (MQ=255)
aCCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCaaa > 1:4631292/1‑93 (MQ=255)
cAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCaaaaa < 2:3358906/93‑1 (MQ=255)
cAATCCGACTTACGGCGTTTCTGGCGGCGTTACGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCaaaaa < 2:3663869/93‑1 (MQ=255)
aaTCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAg < 1:262016/93‑1 (MQ=255)
aaTCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAg > 1:2228061/1‑93 (MQ=255)
aTCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGc < 2:1850510/93‑1 (MQ=255)
aTCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGc > 2:2452418/1‑93 (MQ=255)
aTCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGc > 2:1491917/1‑93 (MQ=255)
tCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGcc > 2:3008205/1‑93 (MQ=255)
ccGACTTACGGCGTTTCTGGCGGCGTTATGGCAAAGTGATTTCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCt < 1:4315566/93‑1 (MQ=255)
ccGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCt < 1:139932/93‑1 (MQ=255)
gACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTg > 1:1443518/1‑93 (MQ=255)
gACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTg < 2:4247221/93‑1 (MQ=255)
aCTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGc < 1:1659317/93‑1 (MQ=255)
aCTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGc < 2:739042/93‑1 (MQ=255)
cTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCt > 1:1917158/1‑93 (MQ=255)
cTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCt > 2:4401734/1‑93 (MQ=255)
cTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAACAGCCTTGCt > 1:2299904/1‑93 (MQ=255)
tACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGa < 1:4112342/93‑1 (MQ=255)
tACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGa < 1:2745849/93‑1 (MQ=255)
tACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGa < 2:1995167/93‑1 (MQ=255)
aCGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGaa < 2:1999782/93‑1 (MQ=255)
cGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAAt < 2:1947382/93‑1 (MQ=255)
cGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAAt < 2:303657/93‑1 (MQ=255)
|
CTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAAT > NC_000913/1942289‑1942465
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAATCAAAT > NC_000913/1942284‑1942470
|
TATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCG < SRR4302535.3659212/94‑1 (MQ=60)
ATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGT > SRR4302535.4195287/1‑94 (MQ=60)
TGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTG > SRR4302535.3100321/1‑94 (MQ=60)
GGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGG > SRR4302535.3740256/1‑94 (MQ=60)
AGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGG > SRR4302535.492291/1‑94 (MQ=60)
AGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGG > SRR4302535.4386097/1‑94 (MQ=60)
CTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTT < SRR4302535.4156224/94‑1 (MQ=60)
GTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATG > SRR4302535.2680179/1‑94 (MQ=60)
TAAGACGCGAACAGCGTCGCATCAGGCATATTTCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGC > SRR4302535.3097753/1‑94 (MQ=60)
TAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGC > SRR4302535.3095372/1‑94 (MQ=60)
AAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCC < SRR4302535.1008453/94‑1 (MQ=60)
AGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCA > SRR4302535.4384023/1‑94 (MQ=60)
CGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAG < SRR4302535.3332515/94‑1 (MQ=60)
CGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAG > SRR4302535.4162826/1‑94 (MQ=60)
CGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTG > SRR4302535.1545645/1‑94 (MQ=60)
CGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTG < SRR4302535.2367581/94‑1 (MQ=60)
CGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGACGGCGTTATGCCAAAGTG > SRR4302535.211938/1‑94 (MQ=60)
AACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGAT < SRR4302535.2416113/94‑1 (MQ=60)
ACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATT < SRR4302535.4210693/94‑1 (MQ=60)
AGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCC < SRR4302535.3414508/94‑1 (MQ=60)
CGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCTGCGTTATGCCAAAGTGATTCCAC > SRR4302535.2310417/1‑94 (MQ=60)
CGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCAC < SRR4302535.3398458/94‑1 (MQ=60)
GTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACG < SRR4302535.3962125/94‑1 (MQ=60)
GCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCC > SRR4302535.3343507/1‑94 (MQ=60)
CATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCG < SRR4302535.3719796/94‑1 (MQ=60)
CATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCG < SRR4302535.3543704/94‑1 (MQ=60)
ATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGC > SRR4302535.1931034/1‑94 (MQ=60)
ATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGC > SRR4302535.4131097/1‑94 (MQ=60)
GGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCG < SRR4302535.164285/94‑1 (MQ=60)
GGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCG < SRR4302535.4651771/94‑1 (MQ=60)
GCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGT > SRR4302535.1022104/1‑94 (MQ=60)
ATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCG > SRR4302535.3883222/1‑94 (MQ=60)
TATTGCAAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGC > SRR4302535.1929755/1‑94 (MQ=60)
ATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCC > SRR4302535.4101035/1‑94 (MQ=60)
GCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATA > SRR4302535.1168916/1‑94 (MQ=60)
CCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATAC > SRR4302535.3496481/1‑94 (MQ=60)
AGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGC > SRR4302535.2856307/1‑94 (MQ=60)
GTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCC < SRR4302535.3025884/94‑1 (MQ=60)
GTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCC > SRR4302535.3462753/1‑94 (MQ=60)
TGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCC < SRR4302535.3315651/94‑1 (MQ=60)
GCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCA < SRR4302535.2748538/94‑1 (MQ=60)
CGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACG > SRR4302535.4684438/1‑94 (MQ=60)
CGGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACG > SRR4302535.1065664/1‑94 (MQ=60)
GGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGC > SRR4302535.1563519/1‑94 (MQ=60)
GGATGCGGCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGC > SRR4302535.1534093/1‑94 (MQ=60)
GGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTA < SRR4302535.2678966/94‑1 (MQ=60)
GCGCGAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTAC > SRR4302535.260247/1‑94 (MQ=60)
GAGCGACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTG < SRR4302535.1191583/94‑1 (MQ=60)
GCGGCGAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCCCGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCA < SRR4302535.1867724/94‑1 (MQ=60)
GACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAA > SRR4302535.805763/1‑94 (MQ=60)
GACCAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAA < SRR4302535.1191974/94‑1 (MQ=60)
GACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAA > SRR4302535.4662715/1‑94 (MQ=60)
CAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAG < SRR4302535.2856660/94‑1 (MQ=60)
CAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAG > SRR4302535.2243911/1‑94 (MQ=60)
CAATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAG > SRR4302535.1961277/1‑94 (MQ=60)
AATCCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGC < SRR4302535.263834/94‑1 (MQ=60)
CCGACTTACGGCGTTTCTGGCGGCGTTATGGCAAAGTGATTTCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTT < SRR4302535.4345086/94‑1 (MQ=60)
CCGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTT < SRR4302535.140912/94‑1 (MQ=60)
CGACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTG > SRR4302535.1453840/1‑94 (MQ=60)
GACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGC > SRR4302535.1871881/1‑94 (MQ=60)
ACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCT > SRR4302535.1930971/1‑94 (MQ=60)
ACTTACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCT < SRR4302535.1671312/94‑1 (MQ=60)
ACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAACAGCCTTGCT > SRR4302535.2316361/1‑94 (MQ=60)
TACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAA < SRR4302535.4140489/94‑1 (MQ=60)
TACGGCGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAA < SRR4302535.2765419/94‑1 (MQ=60)
CGTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCAGGCGGTGTACGCTGCAAAAAGCCTTGCTGAATCAAA > SRR4302535.4358999/1‑94 (MQ=60)
GTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAATCAAAT > SRR4302535.3633039/1‑94 (MQ=60)
GTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAATCAAAT < SRR4302535.1575434/94‑1 (MQ=60)
GTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAATCAAAT < SRR4302535.2144129/94‑1 (MQ=60)
GTTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAATCAAAT > SRR4302535.1112933/1‑94 (MQ=60)
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TATCTCTGGTAGTCCTGGTAAGACGCGAACAGCGTCGCATCAGGCATATTGCCAGTGCCGGATGCGGCGCGAGCGACCAATCCGACTTACGGCATTTCTGGCGGCGTTATGCCAAAGTGATTCCACGCCCGCGTCGTCGCCATACGCCCACGCGGTGTACGCTGCAAAAAGCCTTGCTGAATCAAAT > NC_000913/1942284‑1942470
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
