Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,950,024 |
T→C |
G202G (GGT→GGC) |
yecE → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,950,024 | 0 | T | C | 100.0%
| 323.8
/ NA
| 102 | G202G (GGT→GGC) | yecE | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (54/48); total (54/48) |
Only 100 of 103 total aligned reads displayed.
GAAGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGTAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCTTTT > NC_000913/1949935‑1950113
|
gAAGCTATTCGCGACGCTCAACGAAAAATACCTAATGTTCCGGTACATGCTGTACTGACGGCTACAAATCCGCTGATCGGTTTTATCGGCAGt < 2:2409226/93‑1 (MQ=255)
gAAGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGt < 1:2844656/93‑1 (MQ=255)
aGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGtga < 1:4664015/93‑1 (MQ=255)
gCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGtgat > 1:4158521/1‑93 (MQ=255)
aTTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTgatgat > 1:4594845/1‑93 (MQ=255)
ttCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGata < 1:391743/93‑1 (MQ=255)
tCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGatat < 1:2522015/93‑1 (MQ=255)
gcgACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGa < 2:160426/93‑1 (MQ=255)
ggACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACGGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGAc < 2:1521809/92‑1 (MQ=255)
gACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACg > 1:4244543/1‑93 (MQ=255)
gACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACg > 2:2989092/1‑93 (MQ=255)
gACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACg > 1:3826570/1‑93 (MQ=255)
aCGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGc < 2:312679/93‑1 (MQ=255)
aCGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGc < 1:1699/93‑1 (MQ=255)
cTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCaaa > 2:2638374/1‑93 (MQ=255)
cTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCaaa < 2:4180970/93‑1 (MQ=255)
tCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCaaaa > 1:48644/1‑93 (MQ=255)
tCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCaaaa < 2:4150034/93‑1 (MQ=255)
tCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCaaaa < 1:1143468/93‑1 (MQ=255)
tCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCaaaa > 1:2879481/1‑93 (MQ=255)
cagcGAAAAAAACCTAAAGTGCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAAc < 1:2745166/90‑1 (MQ=255)
cAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAAc < 1:3210406/93‑1 (MQ=255)
cAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAAc < 1:906494/93‑1 (MQ=255)
aaCGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAAcc > 1:3400215/1‑93 (MQ=255)
gAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCggg > 1:2438918/1‑93 (MQ=255)
gAAAAAAACATCAAGTCCCGGTACATGCTGTACTGACGGAGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCggg < 1:2055939/93‑1 (MQ=255)
aaaaaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAat > 2:4382936/1‑93 (MQ=255)
aaaaaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAat > 1:3285325/1‑93 (MQ=255)
aaaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAatta < 2:556218/93‑1 (MQ=255)
aaaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAatta < 1:3743793/93‑1 (MQ=255)
aaaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAatta > 1:1608185/1‑93 (MQ=255)
aaaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAatta < 2:4674673/93‑1 (MQ=255)
aaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAattat < 2:2638714/93‑1 (MQ=255)
aaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAattat < 2:4284200/93‑1 (MQ=255)
aaCCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACACAAAACCGGGAattat > 2:1741561/1‑93 (MQ=255)
ccTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTAttt < 2:3483396/93‑1 (MQ=255)
ccTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTAttt < 1:3703941/93‑1 (MQ=255)
ccTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTAttt < 2:3104446/93‑1 (MQ=255)
ccTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTAttt > 1:4654256/1‑93 (MQ=255)
cTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTc < 1:2547910/93‑1 (MQ=255)
cTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTc > 1:4522974/1‑93 (MQ=255)
tAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCa > 1:325329/1‑93 (MQ=255)
tAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCa > 1:2852861/1‑93 (MQ=255)
ccGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTgg > 1:3551812/1‑93 (MQ=255)
ggTACATGCTGTACTGACGGTGCCAAATCCGCTGATCCGTTTTATCGGCAGAGGTGATATGACGCAAAACCGGGAATTATTTCACGGCTGGtt > 2:1929072/1‑93 (MQ=255)
ggTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGtt > 2:163583/1‑93 (MQ=255)
cATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACaa < 1:3724019/93‑1 (MQ=255)
cATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACaa > 1:2644131/1‑93 (MQ=255)
aTGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACaaa > 2:43218/1‑93 (MQ=255)
aTGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACaaa > 1:2857170/1‑93 (MQ=255)
tGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACaaaa > 1:4047056/1‑93 (MQ=255)
tGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGGTACaaaa > 2:2185379/1‑93 (MQ=255)
gCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACaaaaa > 2:4384042/1‑93 (MQ=255)
cTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAAt < 2:5107/93‑1 (MQ=255)
tGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAAtt < 1:2324634/93‑1 (MQ=255)
tGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAAtt > 2:3584990/1‑93 (MQ=255)
tACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAg < 2:314695/93‑1 (MQ=255)
tACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAg > 2:3900512/1‑93 (MQ=255)
aCTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAGTTATTTCAGGTCTGGGTACAAAAATTAga > 1:1829438/1‑92 (MQ=255)
aCTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAgc < 1:2881764/93‑1 (MQ=255)
aCTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAgc < 2:4535957/93‑1 (MQ=255)
cTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAgcg > 2:3351821/1‑93 (MQ=255)
tGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAgcgc > 1:753596/1‑93 (MQ=255)
tGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAgcgc > 1:1621442/1‑93 (MQ=255)
gACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCa > 1:3467445/1‑93 (MQ=255)
gACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGAGCa > 2:614788/1‑93 (MQ=255)
gACGGCGAAAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCa < 2:3722811/93‑1 (MQ=255)
cGGCGACACATCCGCTGATCCGTTTTATCGGCAGTGTTGATATGACCCAAAACCGGGCATTAGTTCAGGTCTGTTTACCACAAGTAacgccgc > 2:2927783/1‑90 (MQ=255)
cGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGt > 1:4254527/1‑93 (MQ=255)
ggCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTg > 2:1408959/1‑93 (MQ=255)
ggCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTg > 1:910411/1‑93 (MQ=255)
ggCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTg < 1:4327586/93‑1 (MQ=255)
ggCAACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGAAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTg < 2:4490596/93‑1 (MQ=255)
gCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTgg > 1:3176774/1‑93 (MQ=255)
gCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTgg < 1:4663496/93‑1 (MQ=255)
gACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCa < 1:3448428/93‑1 (MQ=255)
gACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCa > 1:4138668/1‑93 (MQ=255)
aCAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCAt > 2:703200/1‑93 (MQ=255)
aaaTCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCa < 2:782414/93‑1 (MQ=255)
aaaTCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCa > 1:3139722/1‑93 (MQ=255)
aTCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGa < 2:4436919/93‑1 (MQ=255)
tCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGAc > 1:1031814/1‑93 (MQ=255)
tCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGAc > 1:3243584/1‑93 (MQ=255)
tCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGAc < 1:4416969/93‑1 (MQ=255)
gCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCAc < 1:3492544/93‑1 (MQ=255)
tGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTa < 1:3836758/93‑1 (MQ=255)
gATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTAc > 2:2721356/1‑93 (MQ=255)
gATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTAc < 1:3019163/93‑1 (MQ=255)
gATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTAc < 1:1543942/93‑1 (MQ=255)
aTCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACg > 1:1451971/1‑93 (MQ=255)
tCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGc > 2:572521/1‑93 (MQ=255)
cGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCt > 2:3213987/1‑93 (MQ=255)
gTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCtt > 1:3276021/1‑93 (MQ=255)
gTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCtt > 2:2553427/1‑93 (MQ=255)
gTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCtt < 1:1901989/93‑1 (MQ=255)
ttttATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTa < 1:4555249/93‑1 (MQ=255)
tttATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTAt < 1:3925519/93‑1 (MQ=255)
tATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCt < 1:328773/93‑1 (MQ=255)
tCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCttt < 2:314795/93‑1 (MQ=255)
cGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCtttt > 1:769691/1‑93 (MQ=255)
|
GAAGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGTAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCTTTT > NC_000913/1949935‑1950113
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGTGAAGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGTAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCTTTT > NC_000913/1949931‑1950113
|
CAGTGAAGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGG > SRR4302535.3933895/1‑94 (MQ=60)
GTGAAGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAG < SRR4302535.1635509/94‑1 (MQ=60)
GAAGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTG < SRR4302535.2864823/94‑1 (MQ=60)
AGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGAT > SRR4302535.4186986/1‑94 (MQ=60)
AGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGAT < SRR4302535.4695550/94‑1 (MQ=60)
TATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGAT > SRR4302535.4626111/1‑94 (MQ=60)
TTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATAT < SRR4302535.394472/94‑1 (MQ=60)
TCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATG < SRR4302535.2540190/94‑1 (MQ=60)
CGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACG > SRR4302535.4273596/1‑94 (MQ=60)
CGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACG > SRR4302535.3852969/1‑94 (MQ=60)
ACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCA < SRR4302535.1718/94‑1 (MQ=60)
CTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAA > SRR4302535.49012/1‑94 (MQ=60)
CTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAA > SRR4302535.2899867/1‑94 (MQ=60)
TCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAAC < SRR4302535.1151621/94‑1 (MQ=60)
CAGCGAAAAAAACCTAAAGTGCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACC < SRR4302535.2764733/94‑1 (MQ=60)
CAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACC > SRR4302535.3423878/1‑94 (MQ=60)
CAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACC < SRR4302535.912927/94‑1 (MQ=60)
CAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACC < SRR4302535.3232644/94‑1 (MQ=60)
CGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGG > SRR4302535.2456488/1‑94 (MQ=60)
GAAAAAAACATCAAGTCCCGGTACATGCTGTACTGACGGAGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGA < SRR4302535.2070749/94‑1 (MQ=60)
AAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAAT > SRR4302535.3308162/1‑94 (MQ=60)
AAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAAT < SRR4302535.3547375/94‑1 (MQ=60)
AAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTA > SRR4302535.1619783/1‑94 (MQ=60)
AAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTAT < SRR4302535.3769695/94‑1 (MQ=60)
ACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTT > SRR4302535.4685763/1‑94 (MQ=60)
CCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTC > SRR4302535.4553964/1‑94 (MQ=60)
CCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTC < SRR4302535.3729592/94‑1 (MQ=60)
CTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCA > SRR4302535.2873071/1‑94 (MQ=60)
CTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCA < SRR4302535.2566244/94‑1 (MQ=60)
CTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCA > SRR4302535.327581/1‑94 (MQ=60)
TCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGG > SRR4302535.3576460/1‑94 (MQ=60)
ACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAA > SRR4302535.2663068/1‑94 (MQ=60)
CATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAA > SRR4302535.2877412/1‑94 (MQ=60)
CATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAA < SRR4302535.3749817/94‑1 (MQ=60)
ATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAA > SRR4302535.4074758/1‑94 (MQ=60)
TGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTA < SRR4302535.2341267/94‑1 (MQ=60)
TACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAGTTATTTCAGGTCTGGGTACAAAAATTAGA > SRR4302535.1842645/1‑94 (MQ=60)
ACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCG < SRR4302535.2902160/94‑1 (MQ=60)
CTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGC > SRR4302535.758901/1‑94 (MQ=60)
CTGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGC > SRR4302535.1633143/1‑94 (MQ=60)
TGACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCA > SRR4302535.3491540/1‑94 (MQ=60)
ACGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGT > SRR4302535.4283674/1‑94 (MQ=60)
CGGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTG > SRR4302535.916882/1‑94 (MQ=60)
GGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGG > SRR4302535.3198752/1‑94 (MQ=60)
GGCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGG < SRR4302535.4357180/94‑1 (MQ=60)
GCGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGC < SRR4302535.4695030/94‑1 (MQ=60)
CGACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCA > SRR4302535.4167012/1‑94 (MQ=60)
GACAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCAT < SRR4302535.3472402/94‑1 (MQ=60)
CAAATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCA > SRR4302535.3161568/1‑94 (MQ=60)
ATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGAC > SRR4302535.1039143/1‑94 (MQ=60)
ATCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGAC > SRR4302535.3266115/1‑94 (MQ=60)
TCCGCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACC < SRR4302535.4447207/94‑1 (MQ=60)
GCTGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACT < SRR4302535.3516817/94‑1 (MQ=60)
TGATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTAC < SRR4302535.3863211/94‑1 (MQ=60)
GATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACG < SRR4302535.3040310/94‑1 (MQ=60)
GATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACG < SRR4302535.1555067/94‑1 (MQ=60)
GATCCGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACG > SRR4302535.1462359/1‑94 (MQ=60)
CGTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTT > SRR4302535.3298777/1‑94 (MQ=60)
GTTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTA < SRR4302535.1915679/94‑1 (MQ=60)
TTTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTAT < SRR4302535.4586363/94‑1 (MQ=60)
TTTATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATC < SRR4302535.3952342/94‑1 (MQ=60)
TATCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCTT < SRR4302535.331054/94‑1 (MQ=60)
TCGGCAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCTTTT > SRR4302535.775107/1‑94 (MQ=60)
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CAGTGAAGCTATTCGCGACGCTCAACGAAAAAAACCTAAAGTTCCGGTACATGCTGTACTGACGGCGACAAATCCGCTGATCCGTTTTATCGGTAGTGATGATATGACGCAAAACCGGGAATTATTTCAGGTCTGGTTACAAAAATTAGCGCAGTGGCATCAGACCACTACGCCTTATCTTTT > NC_000913/1949931‑1950113
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
