Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,974,162 |
(A)6→5 |
coding (118/927 nt) |
motB ← |
MotB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,974,157 | 0 | A | . | 96.4%
| 478.4
/ 9.5
| 110 | coding (123/927 nt) | motB | MotB |
| Reads supporting (aligned to +/- strand): ref base A (2/2); new base . (58/48); total (60/50) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
Only 100 of 123 total aligned reads displayed.
CCCGTAACCGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTT > NC_000913/1974065‑1974246
|
cccGTAACCGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGATGGAGATGGAGATCAGCCACATCACCAGa > 2:2700378/1‑93 (MQ=255)
ccGTAACCGCAGTCGCCAGCGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGaa > 2:4563252/1‑93 (MQ=255)
acccGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGaaaaag < 2:1189714/91‑2 (MQ=255)
aaCCGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGaaaaag < 2:3618474/93‑2 (MQ=255)
aaCCGCAGTCCCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGaaaaag > 2:1433210/1‑92 (MQ=255)
aCCGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGaaaaagg > 2:1060483/1‑91 (MQ=255)
cGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGaaaaaggcc > 1:731178/1‑89 (MQ=255)
cGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGaaaaaggcc < 2:2673285/93‑5 (MQ=255)
gCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCca > 2:1128073/1‑93 (MQ=255)
gCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCca > 1:2584451/1‑93 (MQ=255)
gTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCcatca < 1:1450758/93‑1 (MQ=255)
gTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCcatca > 2:930324/1‑93 (MQ=255)
cGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCatcatc < 1:1874560/93‑1 (MQ=255)
cGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCatcatc < 2:4388071/93‑1 (MQ=255)
cGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCatcatc > 2:1172735/1‑93 (MQ=255)
gCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCg > 1:1379744/1‑93 (MQ=255)
ccAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGc > 2:4004569/1‑93 (MQ=255)
ccAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGc > 2:1804018/1‑93 (MQ=255)
cAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCa > 2:1220582/1‑93 (MQ=255)
aGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAg < 1:2853123/93‑1 (MQ=255)
aGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAg > 2:1313811/1‑93 (MQ=255)
tGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTc > 1:3738391/1‑93 (MQ=255)
ggAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCa > 1:4070015/1‑93 (MQ=255)
gAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCAt < 2:3134154/93‑1 (MQ=255)
gAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCAt > 1:239700/1‑93 (MQ=255)
aGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATa > 1:1663345/1‑93 (MQ=255)
gTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATaa > 2:592304/1‑93 (MQ=255)
gTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATaa > 2:2001390/1‑93 (MQ=255)
gTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATaa < 1:523164/93‑1 (MQ=255)
tCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGGTCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATaaa < 1:2516825/93‑1 (MQ=255)
tCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATaaa > 1:1740132/1‑93 (MQ=255)
gccGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATaaa < 2:3404913/92‑1 (MQ=255)
cGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGt < 2:1344360/93‑1 (MQ=255)
gAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCg > 2:3314868/1‑93 (MQ=255)
cTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATaa > 2:2588887/1‑93 (MQ=255)
cTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATaa < 2:3447485/93‑1 (MQ=255)
cTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATaa > 2:3092652/1‑93 (MQ=255)
tCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAg > 1:4357218/1‑93 (MQ=255)
gCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCaa > 2:73051/1‑93 (MQ=255)
gCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCaa < 1:3737076/93‑1 (MQ=255)
cAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAAt < 1:1022223/93‑1 (MQ=255)
cAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAAt < 2:4182493/93‑1 (MQ=255)
cAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAAt < 2:3629663/93‑1 (MQ=255)
tCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCtt > 2:3384353/1‑93 (MQ=255)
tCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCtt < 1:2672186/93‑1 (MQ=255)
cTGACTCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTc < 2:1369760/93‑1 (MQ=255)
cTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTc < 1:4513223/93‑1 (MQ=255)
tGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTcc > 1:223071/1‑93 (MQ=255)
gAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCa < 1:647202/93‑1 (MQ=255)
gAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCa < 2:1457522/93‑1 (MQ=255)
aaTCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCAc > 1:2336502/1‑93 (MQ=255)
aaTCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCAc > 2:539622/1‑93 (MQ=255)
aaTCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCAc < 2:3746232/93‑1 (MQ=255)
aaTCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCAc < 2:759429/93‑1 (MQ=255)
tCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGa > 1:4229196/1‑93 (MQ=255)
cAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGAt < 2:679444/93‑1 (MQ=255)
aGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGAt < 2:4050306/93‑1 (MQ=255)
gCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATcc > 2:1427111/1‑93 (MQ=255)
gCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATcc > 1:4470364/1‑93 (MQ=255)
ctctTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCa < 2:4340197/93‑1 (MQ=255)
tctTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCAt > 2:1028437/1‑93 (MQ=255)
tctTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCAt > 1:149161/1‑93 (MQ=255)
ctTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCAtg < 2:56303/93‑1 (MQ=255)
ctTTAGGGCTGAAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCAtg < 1:4424909/93‑1 (MQ=255)
ttttGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCAtgt > 1:3628264/1‑93 (MQ=255)
ttttGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCAtgt < 1:20786/93‑1 (MQ=255)
tttGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCAtgtg > 1:2054406/1‑93 (MQ=255)
ttGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGtgc < 1:4191061/93‑1 (MQ=255)
tGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGtgct < 1:1592734/93‑1 (MQ=255)
gCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGcc < 1:3119347/93‑1 (MQ=255)
gCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGcc < 1:4066175/93‑1 (MQ=255)
gatggagatCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtgg > 1:2801397/1‑93 (MQ=255)
tggagatCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggct < 1:4030082/93‑1 (MQ=255)
tggagatCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggct > 2:3347496/1‑93 (MQ=255)
ggagatCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggctt > 2:2950589/1‑93 (MQ=255)
gaatCAACCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggctttt < 1:1270016/91‑1 (MQ=255)
agatCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggctttt < 2:222147/93‑1 (MQ=255)
agatCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggctttt < 2:1905890/93‑1 (MQ=255)
agagCAGCCACATCACC‑GGAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggctttt < 1:3603691/93‑1 (MQ=255)
gatCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttg < 2:2511939/93‑1 (MQ=255)
gatCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttg < 2:4654568/93‑1 (MQ=255)
atCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttgg > 2:255034/1‑93 (MQ=255)
atCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttgg > 2:1047904/1‑93 (MQ=255)
aGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttggctt > 2:549282/1‑93 (MQ=255)
gCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttggcttt < 2:1649765/93‑1 (MQ=255)
gCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttggcttt > 2:1626286/1‑93 (MQ=255)
gCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttggcttt > 1:841962/1‑93 (MQ=255)
gCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGtggcttttggcttt < 1:682438/93‑1 (MQ=255)
ccACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTg > 1:4218920/1‑93 (MQ=255)
ccACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTg > 1:2018734/1‑93 (MQ=255)
acaTCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGcg > 2:4153881/1‑93 (MQ=255)
acaTCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGcg > 2:207541/1‑93 (MQ=255)
caTCACCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGcg < 1:3640465/93‑1 (MQ=255)
aTCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGcgtc > 2:4438841/1‑93 (MQ=255)
tCACCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGcgtc > 2:2158068/1‑93 (MQ=255)
tCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGcgtcg > 2:1728405/1‑93 (MQ=255)
tCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGcgtcg > 1:4103029/1‑93 (MQ=255)
cACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGcgtcgt < 1:2986185/93‑1 (MQ=255)
aCCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGtt < 2:3914869/93‑1 (MQ=255)
cAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGttt > 1:513423/1‑93 (MQ=255)
|
CCCGTAACCGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTT > NC_000913/1974065‑1974246
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTGACGACAAT > NC_000913/1974072‑1974255
|
CCGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCC > SRR4302535.736312/1‑94 (MQ=60)
CGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCA > SRR4302535.2603016/1‑94 (MQ=60)
GTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCAT < SRR4302535.1461135/94‑1 (MQ=60)
CGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCG > SRR4302535.1389584/1‑94 (MQ=60)
CGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCG < SRR4302535.1888065/94‑1 (MQ=60)
AGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGT < SRR4302535.2873337/94‑1 (MQ=60)
GTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTC > SRR4302535.3764265/1‑94 (MQ=60)
TGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCA > SRR4302535.4097868/1‑94 (MQ=60)
TGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCA < SRR4302535.2397257/94‑1 (MQ=60)
GGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCAT > SRR4302535.241345/1‑94 (MQ=60)
GAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATA > SRR4302535.1675362/1‑94 (MQ=60)
GTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAA > SRR4302535.1752707/1‑94 (MQ=60)
GTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAA < SRR4302535.526823/94‑1 (MQ=60)
TCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGGTCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAG < SRR4302535.2534964/94‑1 (MQ=60)
GGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCG < SRR4302535.4047305/94‑1 (MQ=60)
AGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCA > SRR4302535.584712/1‑94 (MQ=60)
CTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAG > SRR4302535.4387048/1‑94 (MQ=60)
CCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCA > SRR4302535.4395813/1‑94 (MQ=60)
GCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAAT < SRR4302535.3762940/94‑1 (MQ=60)
CAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATC < SRR4302535.1029487/94‑1 (MQ=60)
TCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTC < SRR4302535.2691304/94‑1 (MQ=60)
CTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCC > SRR4302535.224607/1‑94 (MQ=60)
CTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCC < SRR4302535.4544170/94‑1 (MQ=60)
GAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCAC < SRR4302535.651713/94‑1 (MQ=60)
GAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCAC > SRR4302535.2353222/1‑94 (MQ=60)
ATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGA > SRR4302535.4258141/1‑94 (MQ=60)
AGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCC > SRR4302535.4501036/1‑94 (MQ=60)
CTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCAT > SRR4302535.150199/1‑94 (MQ=60)
CTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGT > SRR4302535.2026194/1‑94 (MQ=60)
CTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGT > SRR4302535.3653410/1‑94 (MQ=60)
CTTTAGGGCTGAAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGT < SRR4302535.4455216/94‑1 (MQ=60)
TTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTG < SRR4302535.3398572/94‑1 (MQ=60)
TTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTG > SRR4302535.2069205/1‑94 (MQ=60)
TTTTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTG < SRR4302535.20940/94‑1 (MQ=60)
TTGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCT < SRR4302535.4219744/94‑1 (MQ=60)
TGGGCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTG < SRR4302535.1604229/94‑1 (MQ=60)
GCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCC < SRR4302535.3141064/94‑1 (MQ=60)
GCTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCC < SRR4302535.4094000/94‑1 (MQ=60)
CTGGAGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCC < SRR4302535.1601981/94‑1 (MQ=60)
GAGATGGAGATCAGCCACAGCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTG < SRR4302535.2713569/94‑1 (MQ=60)
AGATGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGG > SRR4302535.2821322/1‑94 (MQ=60)
TGGAGATCAGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTT < SRR4302535.4057656/94‑1 (MQ=60)
gaatcaaCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTG < SRR4302535.1279093/87‑1 (MQ=60)
AGAGCAGCCACATCACC‑GGAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTG < SRR4302535.3628695/94‑1 (MQ=60)
AGCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTT > SRR4302535.847872/1‑94 (MQ=60)
GCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTG > SRR4302535.4247788/1‑94 (MQ=60)
GCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTG > SRR4302535.2033283/1‑94 (MQ=60)
GCCACATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTG < SRR4302535.687216/94‑1 (MQ=60)
CATCACCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGT < SRR4302535.3665684/94‑1 (MQ=60)
ATCACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCG > SRR4302535.4131120/1‑94 (MQ=60)
CACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTT < SRR4302535.3007129/94‑1 (MQ=60)
ACCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTT > SRR4302535.3723258/1‑94 (MQ=60)
CCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTT > SRR4302535.517011/1‑94 (MQ=60)
CCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTG > SRR4302535.2442187/1‑94 (MQ=60)
CCAG‑AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTG < SRR4302535.1962799/94‑1 (MQ=60)
agAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTGAC > SRR4302535.2748471/3‑94 (MQ=60)
agAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTGAC < SRR4302535.1157794/92‑1 (MQ=60)
AAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTGACGA < SRR4302535.3532405/94‑1 (MQ=60)
AAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTGACGAC > SRR4302535.2655168/1‑94 (MQ=60)
AGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTGACGACAAT < SRR4302535.70710/94‑1 (MQ=60)
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CCGCAGTCGCCAGTGGAGTCCGGAAGTACTCCGCAATCTGAATCAGCTCTTTTGGGCTGGAGATGGAGATCAGCCACATCACCAGAAAAAAGGCCATCATCGCAGTCATAAAGTCGGCATAAGCAATCTTCCACGATCCATGTGCTGCCCCGTGGCTTTTGGCTTTGCGTCGTTTGACGACAAT > NC_000913/1974072‑1974255
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
