Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,980,552 |
(A)6→5 |
intergenic (‑141/+26) |
otsB ← / ← araH |
trehalose‑6‑phosphate phophatase/ABC‑type arabinose transport system permease component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,980,547 | 0 | A | . | 98.3%
| 513.7
/ 0.6
| 116 | intergenic (‑136/+31) | otsB/araH | trehalose‑6‑phosphate phophatase/ABC‑type arabinose transport system permease component |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base . (45/69); total (46/70) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 140 total aligned reads displayed.
CGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAG > NC_000913/1980455‑1980634
|
cgcTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGa < 1:1358246/93‑1 (MQ=255)
ttACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGaaaaa < 1:363516/93‑1 (MQ=255)
ttACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGaaaaa < 1:2613894/93‑1 (MQ=255)
ttACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGaaaaa > 1:1493534/1‑93 (MQ=255)
tACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGaaaaac < 1:2299268/93‑2 (MQ=255)
tACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTGGGCTATGGTGGGaaaaac < 1:1887162/93‑2 (MQ=255)
aCAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGaaaaacg < 1:749802/93‑3 (MQ=255)
aCAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTGGGTATGGTGGGaaaaaag > 1:3961729/1‑92 (MQ=255)
cAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGaaaaacgc < 1:1047159/93‑4 (MQ=255)
aGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGaaaaacgct > 1:1374094/1‑89 (MQ=255)
gACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTa < 2:594901/93‑1 (MQ=255)
cATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTaaa > 1:693312/1‑93 (MQ=255)
ttGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAAt < 1:3219864/92‑1 (MQ=255)
aTGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAAt < 1:3728002/93‑1 (MQ=255)
aTGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAAt > 2:1474323/1‑93 (MQ=255)
tGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAAtt > 2:3025415/1‑93 (MQ=255)
tGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAAtt > 2:2262910/1‑93 (MQ=255)
gTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTGGCTATTGGGGGGAAAACGGCTAAAtg > 2:1795337/1‑92 (MQ=255)
aaGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAAttgtt < 2:2065809/93‑1 (MQ=255)
aaGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAAttgtt < 2:592149/93‑1 (MQ=255)
aGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAAttgttg < 1:3201429/93‑1 (MQ=255)
gTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGc < 2:233135/93‑1 (MQ=255)
gTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTGGCTATGG‑GGGGGAAAACGCTAAATTGTTGc > 1:3624756/1‑93 (MQ=255)
tataGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCa < 2:2336315/93‑1 (MQ=255)
tataGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCa < 1:4167567/93‑1 (MQ=255)
ataGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑GAAAACGCTAAATTGTTGCAg > 2:2482125/1‑93 (MQ=255)
ataGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAg > 1:3034880/1‑93 (MQ=255)
taGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGa < 2:4652063/93‑1 (MQ=255)
gACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑GAAAACGCTAAATTGTTGCAGaaa > 2:180645/1‑93 (MQ=255)
gACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGaaa > 2:1106315/1‑93 (MQ=255)
aCAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGaaaa > 2:2095778/1‑93 (MQ=255)
aCAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGaaaa < 1:1169599/93‑1 (MQ=255)
cAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGaaaaa < 2:2162048/93‑1 (MQ=255)
cAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGaaaaa < 1:3412970/93‑1 (MQ=255)
aGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGaaaaaa < 1:3211987/93‑1 (MQ=255)
gtgtGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGaaaaaaa > 2:447031/1‑92 (MQ=255)
gtgtGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAg < 2:75926/93‑1 (MQ=255)
gtgtGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAg > 1:4226428/1‑93 (MQ=255)
gtgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCa < 1:2979621/93‑1 (MQ=255)
tgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCAt > 1:2781526/1‑93 (MQ=255)
tgACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCAt < 1:492017/93‑1 (MQ=255)
gACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATc < 1:291371/93‑1 (MQ=255)
gACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATc < 2:3919517/93‑1 (MQ=255)
gACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATc < 2:3313344/93‑1 (MQ=255)
gggggTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGa < 2:4229171/93‑1 (MQ=255)
ggggTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGAc < 1:2657590/93‑1 (MQ=255)
gggTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACa < 1:1860865/93‑1 (MQ=255)
ggTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAACATCAGACAg > 2:1578305/1‑93 (MQ=255)
gTCGCCATTTGCAACGAAGAACAGCTAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGt < 2:3354077/93‑1 (MQ=255)
cGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGc > 2:3623617/1‑93 (MQ=255)
gCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCg > 1:1416967/1‑93 (MQ=255)
ccATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGt > 1:2267053/1‑93 (MQ=255)
cATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGtt < 1:4475864/93‑1 (MQ=255)
cATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGtt < 1:1834709/93‑1 (MQ=255)
cATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGtt > 2:612522/1‑93 (MQ=255)
aTTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑GAAAACGCTAAATTGTTGCAGAAAAAAACAACAGACAGTGCGttt > 2:3245330/1‑93 (MQ=255)
aTTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGttt > 2:475529/1‑93 (MQ=255)
aTTTGCAACGAAGAACAGCCAACAGTTATGGCGGGTGGCTATGGTGGG‑GAAAACGCCAAACTGTTGCAGAAAAAAGCATCAGAAAAGGCGttt > 2:1045678/1‑93 (MQ=255)
tttGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTc < 2:349344/93‑1 (MQ=255)
tttGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTc > 2:429329/1‑93 (MQ=255)
gCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCt > 1:1862284/1‑93 (MQ=255)
cAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCtt < 2:3098659/93‑1 (MQ=255)
aaCGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAA‑GCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttt > 1:3930251/1‑93 (MQ=255)
aaCGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttt < 2:3007977/93‑1 (MQ=255)
aCGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCtttt > 2:201325/1‑93 (MQ=255)
aCGAAGAACAGCCAACCGGTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttt < 1:4105866/93‑1 (MQ=255)
cGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttttt < 2:456682/93‑1 (MQ=255)
cGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttttt < 1:2865891/93‑1 (MQ=255)
cGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttttt > 2:2753146/1‑93 (MQ=255)
cGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCttttt < 1:3631147/93‑1 (MQ=255)
gaagaaCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTg > 2:4471836/1‑93 (MQ=255)
aagaaCAGCCAACCGTTATGGCGGTTGGGTATGGTGGG‑AAAAACGCTGAGTTGTTGCAGCAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGc > 1:736155/1‑93 (MQ=255)
agaaCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCt < 2:254904/93‑1 (MQ=255)
aaCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTg < 2:3481250/93‑1 (MQ=255)
aaCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTg < 1:3496605/93‑1 (MQ=255)
aCAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGt < 1:2382642/93‑1 (MQ=255)
gCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAAc > 1:38118/1‑93 (MQ=255)
gCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAAc < 1:4623929/93‑1 (MQ=255)
ccAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACg < 2:3018934/93‑1 (MQ=255)
ccAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACg < 2:3592212/93‑1 (MQ=255)
cAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACgg < 2:2813544/93‑1 (MQ=255)
cAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACgg > 2:3559184/1‑93 (MQ=255)
aaCCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGt > 2:1607764/1‑93 (MQ=255)
aaCCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGt > 2:752566/1‑93 (MQ=255)
aCCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTc < 1:1477518/93‑1 (MQ=255)
aCCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTc > 1:2384176/1‑93 (MQ=255)
gTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGTTTGTAACGGTCGaa < 2:2863225/93‑1 (MQ=255)
ttATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAg < 2:3606302/93‑1 (MQ=255)
tGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATc < 2:3679721/93‑1 (MQ=255)
tGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATc < 2:3037070/93‑1 (MQ=255)
ggCGCTTGTCTATGGTGGG‑AAAAGCGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCa < 1:438636/93‑1 (MQ=255)
gCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCAc > 2:2744411/1‑93 (MQ=255)
ggTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCg < 2:265387/93‑1 (MQ=255)
gTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGc < 1:2159576/93‑1 (MQ=255)
gTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGc < 2:3284357/93‑1 (MQ=255)
ggCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGc > 1:128844/1‑93 (MQ=255)
tATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCcag > 1:2374204/1‑93 (MQ=255)
aTGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCcagc < 1:4445999/93‑1 (MQ=255)
tggtggG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCcagca < 2:190186/93‑1 (MQ=255)
ggtggG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCcagcag < 2:3367591/93‑1 (MQ=255)
|
CGCTTTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAG > NC_000913/1980455‑1980634
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCC > NC_000913/1980459‑1980643
|
TTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAC < SRR4302535.2632639/94‑1 (MQ=60)
TTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAC < SRR4302535.366021/94‑1 (MQ=60)
TACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTGGGTATGGTGGGAAAAAAG > SRR4302535.3988784/1‑94 (MQ=60)
ACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGC < SRR4302535.755087/94‑1 (MQ=60)
CAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCT < SRR4302535.1054584/94‑1 (MQ=60)
CAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCT < SRR4302535.917147/94‑1 (MQ=60)
CAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCT > SRR4302535.1383913/1‑94 (MQ=60)
ACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAA > SRR4302535.698173/1‑94 (MQ=60)
TTGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATT < SRR4302535.3242176/94‑1 (MQ=60)
ATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATT < SRR4302535.3753824/94‑1 (MQ=60)
ATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCCTTATGGCGGGTGGCTATTGTGGGAAAAAACctatatt > SRR4302535.1702922/1‑87 (MQ=60)
TGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTG < SRR4302535.2578965/94‑1 (MQ=60)
AGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGC < SRR4302535.3223595/94‑1 (MQ=60)
AGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGGTGGCTATGG‑GGGGGAAAACGCTAAATTGTTGC > SRR4302535.3649880/1‑94 (MQ=60)
GTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGGTGCA > SRR4302535.2793846/1‑94 (MQ=60)
TATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAG > SRR4302535.3056127/1‑94 (MQ=60)
TATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAG < SRR4302535.4196102/94‑1 (MQ=60)
ACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAA < SRR4302535.1177950/94‑1 (MQ=60)
CAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAA < SRR4302535.3436719/94‑1 (MQ=60)
AGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAG < SRR4302535.3234232/94‑1 (MQ=60)
AGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAG > SRR4302535.4255348/1‑94 (MQ=60)
GTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCAT > SRR4302535.2801329/1‑94 (MQ=60)
GTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCAT < SRR4302535.3000527/94‑1 (MQ=60)
TGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATC < SRR4302535.495465/94‑1 (MQ=60)
GACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCA < SRR4302535.293410/94‑1 (MQ=60)
ACGGGTGTCGCCATTTGCAACGAAGAACAGCCAGCCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAG < SRR4302535.3871248/94‑1 (MQ=60)
CGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGCTGGCTATGGTGGG‑GAAAACGCTAAAATGTTGCAGAAAAAAGCATCAGA > SRR4302535.3695199/1‑94 (MQ=60)
GGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACA < SRR4302535.2676631/94‑1 (MQ=60)
GGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAG < SRR4302535.1874284/94‑1 (MQ=60)
GTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTG > SRR4302535.1345125/1‑94 (MQ=60)
CGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCG > SRR4302535.1427083/1‑94 (MQ=60)
GCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGT > SRR4302535.2283211/1‑94 (MQ=60)
CATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTT < SRR4302535.4506582/94‑1 (MQ=60)
CATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTT < SRR4302535.561870/94‑1 (MQ=60)
CATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTT < SRR4302535.1847948/94‑1 (MQ=60)
TTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCG < SRR4302535.3567408/94‑1 (MQ=60)
TGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCT > SRR4302535.1875716/1‑94 (MQ=60)
GCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTT > SRR4302535.2355312/1‑94 (MQ=60)
CAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAA‑GCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTT > SRR4302535.3957090/1‑94 (MQ=60)
ACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTT < SRR4302535.3282691/94‑1 (MQ=60)
ACGAAGAACAGCCAACCGGTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTT < SRR4302535.4133979/94‑1 (MQ=60)
CGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTG < SRR4302535.2886191/94‑1 (MQ=60)
CGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTG < SRR4302535.3656320/94‑1 (MQ=60)
GAAGAACAGCCAACCGTTATGGCGGTTGGGTATGGTGGG‑AAAAACGCTGAGTTGTTGCAGCAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGC > SRR4302535.741332/1‑94 (MQ=60)
AAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCT < SRR4302535.321421/94‑1 (MQ=60)
AACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGT < SRR4302535.3520906/94‑1 (MQ=60)
ACAGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTA < SRR4302535.2399752/94‑1 (MQ=60)
AGCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAAC > SRR4302535.38413/1‑94 (MQ=60)
GCCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACG < SRR4302535.4655330/94‑1 (MQ=60)
CCAACCGTTATGGCGGTTGGCTATGGTGGG‑GAAAACGCTTAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGG > SRR4302535.1875403/1‑94 (MQ=60)
CCAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGG > SRR4302535.4595958/1‑94 (MQ=60)
CAACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGT > SRR4302535.1404684/1‑94 (MQ=60)
AACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTC > SRR4302535.2401297/1‑94 (MQ=60)
ACCGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCG < SRR4302535.1488094/94‑1 (MQ=60)
CGTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAA > SRR4302535.1831033/1‑94 (MQ=60)
GTTATGGCGGTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAG < SRR4302535.2210626/94‑1 (MQ=60)
GGCGCTTGTCTATGGTGGG‑AAAAGCGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCAC < SRR4302535.441703/94‑1 (MQ=60)
GTTGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCT < SRR4302535.2175087/94‑1 (MQ=60)
TGGCTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGC > SRR4302535.129752/1‑94 (MQ=60)
CTATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAG > SRR4302535.2391259/1‑94 (MQ=60)
ATGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCA < SRR4302535.4476491/94‑1 (MQ=60)
TGGTGGG‑AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAG < SRR4302535.4149415/94‑1 (MQ=60)
GGGAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATT > SRR4302535.4596674/1‑94 (MQ=60)
GGGAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATT < SRR4302535.3452307/94‑1 (MQ=60)
GGGAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATT > SRR4302535.807243/1‑94 (MQ=60)
AAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAG < SRR4302535.3096072/94‑1 (MQ=60)
AAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGC < SRR4302535.27340/94‑1 (MQ=60)
AAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCC < SRR4302535.367565/94‑1 (MQ=60)
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TTACAGACATGTAAGTATAGACAGTGTGACGGGGGTCGCCATTTGCAACGAAGAACAGCCAACCGTTATGGCGGTTGGCTATGGTGGGAAAAAACGCTAAATTGTTGCAGAAAAAAGCATCAGACAGTGCGTTTCGCTTTTTGCTTGTAACGGTCGAAGATCACCGCTGCCAGCAGGATTAAGCC > NC_000913/1980459‑1980643
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
