Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,992,261 |
T→C |
S157G (AGT→GGT) |
b1913 ← |
excinuclease ABC subunit C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,992,261 | 0 | T | C | 100.0%
| 430.2
/ NA
| 136 | S157G (AGT→GGT) | b1913 | excinuclease ABC subunit C |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (71/65); total (71/65) |
Only 100 of 137 total aligned reads displayed.
CTTCTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACTATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATT > NC_000913/1992171‑1992350
|
cttcttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAt > 2:551939/1‑93 (MQ=255)
cttcttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAt < 2:1741791/93‑1 (MQ=255)
cttcttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAt < 2:3373286/93‑1 (MQ=255)
ttcttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAtt > 2:1456106/1‑93 (MQ=255)
ttcttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAtt < 2:2855837/93‑1 (MQ=255)
tcttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAttt < 1:3539278/93‑1 (MQ=255)
tcttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAttt > 2:4285115/1‑93 (MQ=255)
tcttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAttt > 1:2125610/1‑93 (MQ=255)
cttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAtttt < 2:1885511/93‑1 (MQ=255)
cttcACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAtttt < 1:2387739/93‑1 (MQ=255)
tcactcacCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCg > 2:1630352/1‑93 (MQ=255)
actcacCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCa > 2:3590564/1‑93 (MQ=255)
actcacCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCa > 2:2549561/1‑93 (MQ=255)
actcacCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCa > 2:1204970/1‑93 (MQ=255)
cacCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTg > 2:4106606/1‑93 (MQ=255)
acCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTgg < 2:149259/93‑1 (MQ=255)
acCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTgg > 1:13514/1‑93 (MQ=255)
acCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTgg > 2:2678850/1‑93 (MQ=255)
acCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTgg < 2:2978645/93‑1 (MQ=255)
acCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTgg > 2:1405066/1‑93 (MQ=255)
ccAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGc > 2:234257/1‑93 (MQ=255)
aGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGa > 1:2811589/1‑93 (MQ=255)
gTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGaa > 1:3525032/1‑93 (MQ=255)
gTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGaa < 2:3314301/93‑1 (MQ=255)
gTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGaa > 2:1226799/1‑93 (MQ=255)
tCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAAt < 1:1532975/93‑1 (MQ=255)
tCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAAt > 2:3112909/1‑93 (MQ=255)
ccTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATg > 1:4674642/1‑93 (MQ=255)
cTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATgg < 2:1203563/93‑1 (MQ=255)
cTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATgg < 2:3157078/93‑1 (MQ=255)
ttCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATggg < 2:3563120/93‑1 (MQ=255)
ttCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATggg > 2:1814618/1‑93 (MQ=255)
ttCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATggg < 1:1336284/93‑1 (MQ=255)
tCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATgggg > 2:45228/1‑93 (MQ=255)
cAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGa < 1:2473825/93‑1 (MQ=255)
aCGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGaaa < 1:3124207/93‑1 (MQ=255)
gCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAAt > 2:1995672/1‑93 (MQ=255)
cACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATc < 2:3764398/93‑1 (MQ=255)
aCGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCt < 2:1353290/93‑1 (MQ=255)
ggTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCttt < 2:4037786/93‑1 (MQ=255)
gTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCtttt < 2:3684121/93‑1 (MQ=255)
tCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTg > 2:752748/1‑93 (MQ=255)
tCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTg > 2:471589/1‑93 (MQ=255)
cccAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGc < 1:927625/93‑1 (MQ=255)
cccAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGc < 2:3787757/93‑1 (MQ=255)
cccAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTCCGCACTGGCGAATGGGGAAAATCTTTTGc < 1:2878665/93‑1 (MQ=255)
ccAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCa < 1:812696/93‑1 (MQ=255)
ccAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCa < 2:2376849/93‑1 (MQ=255)
ccAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCa < 1:216608/93‑1 (MQ=255)
cAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAg < 1:781797/93‑1 (MQ=255)
cAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAg > 1:2845532/1‑93 (MQ=255)
aGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGt > 1:3493143/1‑93 (MQ=255)
aGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGt > 1:3141991/1‑93 (MQ=255)
gACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTa < 1:116243/93‑1 (MQ=255)
aCAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAg < 1:1153255/93‑1 (MQ=255)
cAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAgc > 1:2344863/1‑93 (MQ=255)
gcgcCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAgcgc > 1:803506/1‑93 (MQ=255)
gcgcCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAgcgc > 2:1528596/1‑93 (MQ=255)
gcgcCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAgcgc < 1:3397536/93‑1 (MQ=255)
cccTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGTGAAAATCTTTTGCAGTAGCGCCAg > 2:902776/1‑93 (MQ=255)
cccTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAg > 2:4528935/1‑93 (MQ=255)
cccTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAg < 2:2385993/93‑1 (MQ=255)
cccTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAg > 2:2486872/1‑93 (MQ=255)
ccTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAgt > 1:415028/1‑93 (MQ=255)
ccTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAgt < 2:1913599/93‑1 (MQ=255)
cTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAgtg > 2:1760194/1‑93 (MQ=255)
cTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAgtg > 2:2829391/1‑93 (MQ=255)
tGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCa < 1:3482809/93‑1 (MQ=255)
tGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCa > 2:4153707/1‑93 (MQ=255)
ggTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCAc < 2:324557/93‑1 (MQ=255)
ggTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCAc < 2:3078218/93‑1 (MQ=255)
ggTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCAc > 2:3785583/1‑93 (MQ=255)
tATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGt > 2:1128999/1‑93 (MQ=255)
aTTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTa < 1:4587133/93‑1 (MQ=255)
gACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCAt > 1:4353952/1‑93 (MQ=255)
acacGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATa > 1:4047585/1‑93 (MQ=255)
acacGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATa < 1:4354640/93‑1 (MQ=255)
acacGGACGCGAGCGATTGAGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATa < 2:1662122/93‑1 (MQ=255)
cacGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAg < 2:13198/93‑1 (MQ=255)
cacGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAg < 1:2058999/93‑1 (MQ=255)
agtgACGCTAGAGATTGCGATAAACACCATTTTCGCACTGGCTAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGc < 1:1414888/90‑1 (MQ=255)
ggACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCa < 2:507966/93‑1 (MQ=255)
cgcgAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTc < 2:2296905/93‑1 (MQ=255)
cgcgAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTc > 1:4220138/1‑93 (MQ=255)
gcgagcgaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCg < 2:2722862/93‑1 (MQ=255)
gagcgaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCggg > 2:359631/1‑93 (MQ=255)
gagcgaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCggg < 1:3810632/93‑1 (MQ=255)
gagcgaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCggg > 1:2930828/1‑93 (MQ=255)
agcgaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGa < 1:1298828/93‑1 (MQ=255)
agagaTTGCGATAAACACCATTTTCGCACTGGAGACTGGGGAAAAACTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCGTTCCGGa > 2:310935/4‑93 (MQ=255)
gcgaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGaa > 1:2743440/1‑93 (MQ=255)
gaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACg > 1:627259/1‑93 (MQ=255)
gaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACg < 1:781762/93‑1 (MQ=255)
gaTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACg > 1:1240404/1‑93 (MQ=255)
aTTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACgg < 1:2321022/93‑1 (MQ=255)
gATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGa > 2:2848971/1‑93 (MQ=255)
aTAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGaa > 1:1912703/1‑93 (MQ=255)
tAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGaaa > 1:3091047/1‑93 (MQ=255)
tAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGaaa > 1:2480411/1‑93 (MQ=255)
tAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGaaa < 2:1170231/93‑1 (MQ=255)
|
CTTCTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACTATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATT > NC_000913/1992171‑1992350
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATTCTTCTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACTATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCACC > NC_000913/1992168‑1992354
|
ATTCTTCTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACC > SRR4302535.3835218/1‑94 (MQ=60)
TCTTCTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCAT < SRR4302535.4582691/94‑1 (MQ=60)
TTCTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTT > SRR4302535.2140931/1‑94 (MQ=60)
TCTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTT < SRR4302535.3563849/94‑1 (MQ=60)
CTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTC < SRR4302535.2404906/94‑1 (MQ=60)
TTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCG > SRR4302535.3548580/1‑94 (MQ=60)
TCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTG < SRR4302535.801800/94‑1 (MQ=60)
CACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGG > SRR4302535.13614/1‑94 (MQ=60)
CAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGA > SRR4302535.2831574/1‑94 (MQ=60)
AGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAA > SRR4302535.3549511/1‑94 (MQ=60)
TCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATG > SRR4302535.4706202/1‑94 (MQ=60)
TCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATG < SRR4302535.1544019/94‑1 (MQ=60)
CCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGG > SRR4302535.1383422/1‑94 (MQ=60)
TTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGG < SRR4302535.1345818/94‑1 (MQ=60)
CAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAA < SRR4302535.3681054/94‑1 (MQ=60)
CAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAA < SRR4302535.2491668/94‑1 (MQ=60)
ACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAA < SRR4302535.3145967/94‑1 (MQ=60)
CACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCT > SRR4302535.2841219/1‑94 (MQ=60)
CCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCA < SRR4302535.934191/94‑1 (MQ=60)
CCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTCCGCACTGGCGAATGGGGAAAATCTTTTGCA < SRR4302535.2899049/94‑1 (MQ=60)
CCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAG < SRR4302535.218099/94‑1 (MQ=60)
CCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAG > SRR4302535.2367497/1‑94 (MQ=60)
CCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAG < SRR4302535.4184097/94‑1 (MQ=60)
CCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAG < SRR4302535.818393/94‑1 (MQ=60)
CCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAG > SRR4302535.2865705/1‑94 (MQ=60)
CAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGT < SRR4302535.787284/94‑1 (MQ=60)
CAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGT > SRR4302535.3517420/1‑94 (MQ=60)
CAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGT > SRR4302535.3163852/1‑94 (MQ=60)
GACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAG < SRR4302535.117061/94‑1 (MQ=60)
ACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGC < SRR4302535.3078977/94‑1 (MQ=60)
ACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGC < SRR4302535.1161499/94‑1 (MQ=60)
ACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGC > SRR4302535.2361665/1‑94 (MQ=60)
AGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGC > SRR4302535.809149/1‑94 (MQ=60)
GCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCC < SRR4302535.3421177/94‑1 (MQ=60)
GCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCC < SRR4302535.1965056/94‑1 (MQ=60)
GCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAG > SRR4302535.2161201/1‑94 (MQ=60)
CCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGT > SRR4302535.417940/1‑94 (MQ=60)
TGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCAC < SRR4302535.3506994/94‑1 (MQ=60)
TATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGTCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTA < SRR4302535.2525999/94‑1 (MQ=60)
ATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTAC < SRR4302535.4618369/94‑1 (MQ=60)
ATTGCAGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTAC > SRR4302535.4469677/1‑94 (MQ=60)
AGACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCAT > SRR4302535.4383751/1‑94 (MQ=60)
GACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATA > SRR4302535.4075291/1‑94 (MQ=60)
ACACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAG < SRR4302535.4384447/94‑1 (MQ=60)
CACGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGC < SRR4302535.2073833/94‑1 (MQ=60)
agtgacgctagaGATTGCGATAAACACCATTTTCGCACTGGCTAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCC < SRR4302535.1424989/82‑1 (MQ=60)
CGGACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCA < SRR4302535.1002376/94‑1 (MQ=60)
ACGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTC > SRR4302535.4249015/1‑94 (MQ=60)
CGCGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCG < SRR4302535.3282801/94‑1 (MQ=60)
CGAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGG > SRR4302535.2951468/1‑94 (MQ=60)
GAGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGA < SRR4302535.3836925/94‑1 (MQ=60)
AGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAA > SRR4302535.2762993/1‑94 (MQ=60)
AGCGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAA < SRR4302535.1308089/94‑1 (MQ=60)
CGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACG > SRR4302535.1249260/1‑94 (MQ=60)
CGATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACG > SRR4302535.631627/1‑94 (MQ=60)
GATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGG > SRR4302535.1252199/1‑94 (MQ=60)
GATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGG < SRR4302535.787249/94‑1 (MQ=60)
ATTGCGATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGG < SRR4302535.2337634/94‑1 (MQ=60)
GATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAA > SRR4302535.1926487/1‑94 (MQ=60)
ATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAA > SRR4302535.2498296/1‑94 (MQ=60)
ATAAACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAA > SRR4302535.3112574/1‑94 (MQ=60)
ACACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATT > SRR4302535.47322/1‑94 (MQ=60)
CACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTC > SRR4302535.2831577/1‑94 (MQ=60)
CACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTC > SRR4302535.4055442/1‑94 (MQ=60)
ACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCA > SRR4302535.592738/1‑94 (MQ=60)
ACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCA > SRR4302535.1874488/1‑94 (MQ=60)
ACCATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCA > SRR4302535.339865/1‑94 (MQ=60)
CATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCACC < SRR4302535.3114695/94‑1 (MQ=60)
CATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCACC > SRR4302535.810031/1‑94 (MQ=60)
CATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCACC > SRR4302535.810032/1‑94 (MQ=60)
CATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCACC > SRR4302535.2913480/1‑94 (MQ=60)
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ATTCTTCTTCACTCACCAGTCCTTCAACGCACGGTCCCAGACAGCGCCCTATCTGGTATTGCAGACACGGACGCGAGCGATTGCGATAAACACTATTTTCGCACTGGCGAATGGGGAAAATCTTTTGCAGTAGCGCCAGTGTTTCACGTACGGCATAGCCATTCGGGAACGGGCCGAAATATTCACC > NC_000913/1992168‑1992354
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
