Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,995,916 |
T→C |
Y196C (TAC→TGC) |
yecS ← |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,995,916 | 0 | T | C | 99.1%
| 365.4
/ ‑4.6
| 116 | Y196C (TAC→TGC) | yecS | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (73/42); total (74/42) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.80e-01 |
Only 100 of 121 total aligned reads displayed.
AATGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGTAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGG > NC_000913/1995826‑1996005
|
aaTGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCcagcag > 1:513176/1‑93 (MQ=255)
aTGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGa > 2:3733237/1‑93 (MQ=255)
ggCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATg < 2:1152257/93‑1 (MQ=255)
cACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAg > 2:123947/1‑93 (MQ=255)
cACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAg < 2:3080549/93‑1 (MQ=255)
aCTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGc > 2:3903263/1‑93 (MQ=255)
aCTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGc > 1:1125315/1‑93 (MQ=255)
tCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGa > 2:4380365/1‑93 (MQ=255)
tCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGa < 2:720838/93‑1 (MQ=255)
cATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGaa < 2:1859735/93‑1 (MQ=255)
cATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGaa < 2:1594449/93‑1 (MQ=255)
aTTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGaac > 1:295124/1‑92 (MQ=255)
ttttGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAgc > 1:1450026/1‑93 (MQ=255)
ttttGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAgc > 2:4585814/1‑93 (MQ=255)
ttttGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAgc < 2:3118863/93‑1 (MQ=255)
ttttGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAgc > 2:2939517/1‑93 (MQ=255)
ttttGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAgc < 2:1025774/93‑1 (MQ=255)
tttGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAgcc < 1:634977/93‑1 (MQ=255)
ggTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAgccgcc > 1:405479/1‑93 (MQ=255)
ggTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAgccgcc > 2:3954681/1‑93 (MQ=255)
ttCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAg < 2:281371/93‑1 (MQ=255)
ttCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGACATGATCCAGCAGATGAGCGAAGCCGCCAg > 2:4339122/1‑93 (MQ=255)
tctctctcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGa < 2:2594634/93‑1 (MQ=255)
tctctctcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGa < 1:456341/93‑1 (MQ=255)
ctctctcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGAt > 2:2764016/1‑93 (MQ=255)
tctctcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATa > 1:114310/1‑93 (MQ=255)
tctcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACa > 1:2500674/1‑93 (MQ=255)
ctcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACAt > 1:4598568/1‑93 (MQ=255)
tcCTGGCTAGTAAGTTGATTCTCAAAATGGTTCTGCAACGGCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATg < 1:3853132/93‑1 (MQ=255)
tcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATg < 1:2033667/93‑1 (MQ=255)
tcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATg > 1:3689958/1‑93 (MQ=255)
tcCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATg > 1:3314296/1‑93 (MQ=255)
cTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATggc > 2:1033803/1‑92 (MQ=255)
cTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGt > 1:4484107/1‑93 (MQ=255)
tGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTg > 1:3460257/1‑93 (MQ=255)
tGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTg > 2:1816889/1‑93 (MQ=255)
tGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTg > 2:1746082/1‑93 (MQ=255)
cGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAac < 2:455878/93‑1 (MQ=255)
gATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAaca < 1:4359158/93‑1 (MQ=255)
gATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAaca > 1:1669373/1‑93 (MQ=255)
gATTAAGGTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAaca > 2:3804248/1‑93 (MQ=255)
tAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCt < 1:1868246/93‑1 (MQ=255)
tAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCt < 1:894197/93‑1 (MQ=255)
aaGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTc > 2:1985092/1‑93 (MQ=255)
aaGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTc > 1:3071509/1‑93 (MQ=255)
aaGTTGATTCTCAAAATGGATCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAAAACCTc > 2:1160741/1‑93 (MQ=255)
aGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACcccc > 1:1284438/1‑93 (MQ=255)
aGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTcc > 2:1572743/1‑93 (MQ=255)
gTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCa > 1:279761/1‑93 (MQ=255)
gTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCa > 1:1922609/1‑93 (MQ=255)
gTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCa > 1:2243278/1‑93 (MQ=255)
gTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCa > 2:2175660/1‑93 (MQ=255)
ttGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAg > 2:4062086/1‑93 (MQ=255)
aTTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCga > 1:2708236/1‑92 (MQ=255)
aTTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGt > 2:4182119/1‑93 (MQ=255)
ctcAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTAcg > 2:63032/1‑93 (MQ=255)
tcAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTAcgc > 1:1711033/1‑93 (MQ=255)
aaaaTGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGa > 2:218771/1‑93 (MQ=255)
aaaTGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAg > 1:2606542/1‑93 (MQ=255)
aaaTGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAg < 2:3132684/93‑1 (MQ=255)
aaaTGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAg > 2:243286/1‑93 (MQ=255)
aaaTGGTTCTGCAACGTCGATAAAACAGTCGCCATGATCCAGCAGATGAGCGACGACGCCAGATACATGGGGAAGACCTCCAGCGTATGCGAg > 2:461693/1‑93 (MQ=255)
aaaTGCTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAg < 1:2623628/93‑1 (MQ=255)
aaTGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAgg > 1:4178777/1‑93 (MQ=255)
aaTGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAgg > 2:1057427/1‑93 (MQ=255)
aTGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGt > 2:2200234/1‑93 (MQ=255)
tGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTa > 1:4243055/1‑93 (MQ=255)
gTTCTGCAACGTCTATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAAt < 2:1470935/93‑1 (MQ=255)
ttCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATc < 2:274800/93‑1 (MQ=255)
cTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCaa > 2:159379/1‑93 (MQ=255)
tGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAAc < 1:4345690/93‑1 (MQ=255)
gCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACt < 1:2035428/93‑1 (MQ=255)
gCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACt < 1:1536722/93‑1 (MQ=255)
aaCGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTgc < 2:3246989/93‑1 (MQ=255)
aCGTCGATAACAGAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTgcg > 2:3758794/1‑93 (MQ=255)
aCGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTgcg > 1:2331542/1‑93 (MQ=255)
cGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTgcgc < 2:1492639/93‑1 (MQ=255)
gTCGATAACACAGTCGCCATGATCCAGTAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGcc > 1:3406345/1‑93 (MQ=255)
cGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGCGAACACCTCCAGCGTACGCGAGGCAATCAACTGCGCCTg > 2:4144756/1‑93 (MQ=255)
gATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGa > 2:1948284/1‑93 (MQ=255)
gATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGa < 2:2939949/93‑1 (MQ=255)
gATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGa > 2:2747432/1‑93 (MQ=255)
aTAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTGCGCGAGGTAATCAACTGCGCCTGAc > 1:1860744/1‑93 (MQ=255)
aTAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGAc > 1:4094790/1‑93 (MQ=255)
tAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACg > 2:560124/1‑93 (MQ=255)
acacAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGa > 2:2940786/1‑93 (MQ=255)
aGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAg > 2:2236434/1‑93 (MQ=255)
gCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTcc < 1:1301861/93‑1 (MQ=255)
gCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTcc < 2:3658756/93‑1 (MQ=255)
gCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTcc < 1:1174248/93‑1 (MQ=255)
ccATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACCCCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCg < 1:3673578/93‑1 (MQ=255)
cATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCgg > 2:3463019/1‑93 (MQ=255)
aTGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGc > 2:2742154/1‑93 (MQ=255)
tGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGcc > 2:728276/1‑92 (MQ=255)
gATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCAc < 1:1487397/93‑1 (MQ=255)
gATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCAc > 2:1717339/1‑93 (MQ=255)
aTCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCAcc < 2:2343112/93‑1 (MQ=255)
cagcagATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTgg > 1:963193/1‑93 (MQ=255)
cagcagATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTgg < 1:605086/93‑1 (MQ=255)
cagcagATGAGCGAAGCCGCCAGATACATGGGGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTgg > 1:377786/1‑93 (MQ=255)
|
AATGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGTAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGG > NC_000913/1995826‑1996005
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAATGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGTAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGGATTG > NC_000913/1995825‑1996009
|
CAATGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAG > SRR4302535.516762/1‑94 (MQ=60)
CAATGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAG < SRR4302535.3357340/94‑1 (MQ=60)
AATGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGA > SRR4302535.1824011/1‑94 (MQ=60)
CACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGC > SRR4302535.1133349/1‑94 (MQ=60)
CATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAG > SRR4302535.3727622/1‑94 (MQ=60)
CATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAC > SRR4302535.297184/1‑94 (MQ=60)
ATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGC > SRR4302535.1460397/1‑94 (MQ=60)
TTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCG < SRR4302535.639400/94‑1 (MQ=60)
TGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCC > SRR4302535.408319/1‑94 (MQ=60)
TCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGAT < SRR4302535.459533/94‑1 (MQ=60)
CTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATA > SRR4302535.115113/1‑94 (MQ=60)
CTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACA > SRR4302535.2518707/1‑94 (MQ=60)
TCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACAT > SRR4302535.4629850/1‑94 (MQ=60)
CTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATG > SRR4302535.3337354/1‑94 (MQ=60)
CTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATG > SRR4302535.3715497/1‑94 (MQ=60)
TCCTGGCTAGTAAGTTGATTCTCAAAATGGTTCTGCAACGGCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGG < SRR4302535.3879638/94‑1 (MQ=60)
TCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGG < SRR4302535.2048320/94‑1 (MQ=60)
CCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGT > SRR4302535.4514890/1‑94 (MQ=60)
CTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTG < SRR4302535.2181616/94‑1 (MQ=60)
CTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTG > SRR4302535.3484314/1‑94 (MQ=60)
CGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACA > SRR4302535.1681451/1‑94 (MQ=60)
GATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACAC < SRR4302535.4388997/94‑1 (MQ=60)
ataaagttaatcttaaaaagggtcctgcaccgtgaaaacccaagccgCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCT < SRR4302535.2507283/47‑1 (MQ=60)
TAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTC > SRR4302535.3092955/1‑94 (MQ=60)
TAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTC < SRR4302535.900537/94‑1 (MQ=60)
TAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTC < SRR4302535.1881712/94‑1 (MQ=60)
AAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCC < SRR4302535.4226466/94‑1 (MQ=60)
AAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCCCC > SRR4302535.1293592/1‑94 (MQ=60)
AGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCA > SRR4302535.2259232/1‑94 (MQ=60)
AGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCA > SRR4302535.281712/1‑94 (MQ=60)
AGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCA > SRR4302535.1936469/1‑94 (MQ=60)
GTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAG > SRR4302535.812785/1‑94 (MQ=60)
GATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGA > SRR4302535.2727588/1‑94 (MQ=60)
CTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGC > SRR4302535.1723400/1‑94 (MQ=60)
AAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAG > SRR4302535.2625247/1‑94 (MQ=60)
AAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGG < SRR4302535.2642431/94‑1 (MQ=60)
AAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGG > SRR4302535.135001/1‑94 (MQ=60)
AAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGG > SRR4302535.4207380/1‑94 (MQ=60)
AAATGCTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGG < SRR4302535.2642430/94‑1 (MQ=60)
ATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTA > SRR4302535.4272095/1‑94 (MQ=60)
TTCTGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCA > SRR4302535.4599194/1‑94 (MQ=60)
TGCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACT < SRR4302535.4375425/94‑1 (MQ=60)
GCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTG < SRR4302535.1547795/94‑1 (MQ=60)
GCAACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTG < SRR4302535.2050091/94‑1 (MQ=60)
AACGTCGATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCG > SRR4302535.2348220/1‑94 (MQ=60)
CGTCGATAACACAGTCGCCATGATCCAGTAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCC > SRR4302535.3430053/1‑94 (MQ=60)
GATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTGCGCGAGGTAATCAACTGCGCCTGAC > SRR4302535.1874160/1‑94 (MQ=60)
GATAACACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGAC > SRR4302535.4122810/1‑94 (MQ=60)
CACAGTCGCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAAC < SRR4302535.3102451/94‑1 (MQ=60)
acataCGCCATGATCCATCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACA < SRR4302535.2332106/89‑1 (MQ=60)
GCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCG < SRR4302535.1311160/94‑1 (MQ=60)
GCCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCG < SRR4302535.1182630/94‑1 (MQ=60)
CCATGATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACCCCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGG < SRR4302535.3699015/94‑1 (MQ=60)
GATCCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACC < SRR4302535.1498050/94‑1 (MQ=60)
CCAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGG > SRR4302535.970032/1‑94 (MQ=60)
CCAGCAGATGAGCGAAGCCGCCAGATACATGGGGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGG > SRR4302535.380405/1‑94 (MQ=60)
CAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGGA > SRR4302535.1914217/1‑94 (MQ=60)
CAGCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGGA < SRR4302535.609318/94‑1 (MQ=60)
GCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGGATT < SRR4302535.4268544/94‑1 (MQ=60)
GCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGGATT > SRR4302535.1053023/1‑94 (MQ=60)
GCAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGGATT < SRR4302535.1991727/94‑1 (MQ=60)
CAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGGATTG > SRR4302535.782527/1‑94 (MQ=60)
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CAATGGCACTCATTTTGGTTCTCTCTCCTGGCGATTAAGTTGATTCTCAAAATGGTTCTGCAACGTCGATAACACAGTCGCCATGATCCAGTAGATGAGCGAAGCCGCCAGATACATGGTGAACACCTCCAGCGTACGCGAGGTAATCAACTGCGCCTGACGGAACAGCTCCGGCACCTGGATTG > NC_000913/1995825‑1996009
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
