Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,998,039 |
A→G |
Y124H (TAC→CAC) |
fliY ← |
putative periplasmic binding transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,998,039 | 0 | A | G | 99.2%
| 380.2
/ NA
| 122 | Y124H (TAC→CAC) | fliY | putative periplasmic binding transport protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (64/57); total (64/58) |
| Fisher's exact test for biased strand distribution p-value = 4.75e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 125 total aligned reads displayed.
CCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGA > NC_000913/1997949‑1998126
|
cccccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCg > 1:3991489/1‑93 (MQ=255)
ccccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCgg > 1:296106/1‑93 (MQ=255)
ccccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCgg > 2:3356826/1‑93 (MQ=255)
cccTCTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCggg < 1:1727990/93‑1 (MQ=255)
cccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCggg > 2:2829047/1‑93 (MQ=255)
cccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCggg > 1:870728/1‑93 (MQ=255)
ccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCgggg < 1:4367975/93‑1 (MQ=255)
ccACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCgggg > 2:2487565/1‑93 (MQ=255)
aCTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGtt > 1:1527881/1‑93 (MQ=255)
aCTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGtt < 2:1098801/93‑1 (MQ=255)
cTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTTGTTACCTTTTTTCACCAGCGGCCGAATACCTGAAATGGTGCGCGGGGCTg > 2:1225133/1‑93 (MQ=255)
ttttttGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTga > 1:2501142/1‑93 (MQ=255)
ttttGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTgaga > 1:1571566/1‑93 (MQ=255)
ttGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGaaa < 2:970311/93‑1 (MQ=255)
ttGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGaaa > 2:965884/1‑93 (MQ=255)
gCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATc < 2:1883156/93‑1 (MQ=255)
gCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATc < 1:1207083/93‑1 (MQ=255)
tttCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTa > 2:3112864/1‑93 (MQ=255)
tttCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGGTGAGAAATCGTa > 1:2261651/1‑93 (MQ=255)
ttCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAt < 2:2658851/93‑1 (MQ=255)
aGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAtttt < 2:1850789/93‑1 (MQ=255)
aGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTAtttt < 1:1437213/93‑1 (MQ=255)
tcatcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTc > 1:2562213/1‑93 (MQ=255)
catcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCt > 2:4521152/1‑93 (MQ=255)
catcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCt < 1:3849358/93‑1 (MQ=255)
catcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCt > 2:4269485/1‑93 (MQ=255)
tcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTg > 2:3151699/1‑93 (MQ=255)
tcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTg > 2:2740650/1‑93 (MQ=255)
tcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTg > 2:2739028/1‑93 (MQ=255)
tcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTg > 2:738029/1‑93 (MQ=255)
tcGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTg > 1:3026705/1‑93 (MQ=255)
cGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTgc < 1:3165768/93‑1 (MQ=255)
gCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTgcgc > 1:1698456/1‑93 (MQ=255)
gCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTgcgc > 1:4204097/1‑93 (MQ=255)
tGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtc > 1:565557/1‑93 (MQ=255)
tGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtc > 1:2420038/1‑93 (MQ=255)
gTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtca < 2:4040562/93‑1 (MQ=255)
gTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtca > 2:1125860/1‑93 (MQ=255)
gTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtca < 2:2161830/93‑1 (MQ=255)
gTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtca < 2:4040561/93‑1 (MQ=255)
ttttAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtcat < 2:584254/93‑1 (MQ=255)
tttAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtcatc < 1:1577080/93‑1 (MQ=255)
ttAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAATTCGTATTTTTTCTTGCGCtcatca < 2:4518312/93‑1 (MQ=255)
ttAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCtcatca < 2:3296868/93‑1 (MQ=255)
tAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAg < 1:3049078/93‑1 (MQ=255)
aTGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaa < 1:822193/93‑1 (MQ=255)
aTGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaa > 1:383797/1‑93 (MQ=255)
tGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaaa > 1:210065/1‑93 (MQ=255)
tGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaaa > 1:2761554/1‑93 (MQ=255)
tGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaaa > 2:2580084/1‑93 (MQ=255)
tGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGCGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaaa < 1:2507254/93‑1 (MQ=255)
tGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATAGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGaaa < 2:3795981/93‑1 (MQ=255)
ggTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAAt > 1:2083974/1‑93 (MQ=255)
gTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATg > 2:2364074/1‑93 (MQ=255)
gCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGt < 1:2056424/93‑1 (MQ=255)
ccTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTg > 2:459237/1‑93 (MQ=255)
cTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGa < 2:3042617/93‑1 (MQ=255)
cTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGa > 2:3238739/1‑93 (MQ=255)
ttCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAc > 1:3392628/1‑93 (MQ=255)
tCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAcc < 2:769425/93‑1 (MQ=255)
tCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAcc < 1:1469068/93‑1 (MQ=255)
tCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAcc > 1:562417/1‑93 (MQ=255)
cGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCt > 1:521775/1‑93 (MQ=255)
cGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCt < 1:216285/93‑1 (MQ=255)
gTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTg > 2:1132605/1‑93 (MQ=255)
gTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTg > 1:1747263/1‑93 (MQ=255)
ttcccTTTTTTCGCCAGCGCCTGAATACCAGAAATGGTGTGCGGTGTTGAGAAATCGTATTTTTTCTGGCGCTCATCAGAAATGGTGACCTGa < 2:2044379/90‑1 (MQ=255)
ttACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGGAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGa > 1:746308/1‑93 (MQ=255)
ttACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGa < 1:3381215/93‑1 (MQ=255)
ttACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGa < 1:2406350/93‑1 (MQ=255)
tACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGAt < 1:3040802/93‑1 (MQ=255)
tACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGAt < 2:4674138/93‑1 (MQ=255)
tACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCCGAt < 2:4063884/93‑1 (MQ=255)
ccTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTa > 2:3602549/1‑93 (MQ=255)
cTTTTTTCACCAGCGCGTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTaa < 2:1569766/93‑1 (MQ=255)
ttttttCCCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAt < 1:729721/93‑1 (MQ=255)
ttttttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAt < 2:2670966/93‑1 (MQ=255)
ttttttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAt > 1:2232700/1‑93 (MQ=255)
ttttttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGGTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAt > 2:1933929/1‑93 (MQ=255)
tttttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATc < 1:543764/93‑1 (MQ=255)
tttttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATc < 1:4180337/93‑1 (MQ=255)
tttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATcac > 2:867667/1‑93 (MQ=255)
tttCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATcac < 1:279379/93‑1 (MQ=255)
aCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACcaca > 1:1430559/1‑93 (MQ=255)
aCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACcaca > 1:181417/1‑93 (MQ=255)
cAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATc < 2:4603167/93‑1 (MQ=255)
gcgcCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCaa < 2:3739501/93‑1 (MQ=255)
tGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGt > 2:947450/1‑93 (MQ=255)
tGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGt > 1:4472508/1‑93 (MQ=255)
aTACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTa > 2:3320805/1‑93 (MQ=255)
tACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTag > 1:1599306/1‑93 (MQ=255)
ccAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTagag < 1:2865799/93‑1 (MQ=255)
ccAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTagag < 2:3023767/93‑1 (MQ=255)
aGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTc < 2:2821170/93‑1 (MQ=255)
aGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTc < 2:3832486/93‑1 (MQ=255)
gAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTcc > 2:2587933/1‑93 (MQ=255)
gAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTcc < 1:3846927/93‑1 (MQ=255)
aaaTGTTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCa < 1:2940804/93‑1 (MQ=255)
ggTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCGGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGa > 1:2512474/1‑93 (MQ=255)
ggTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGa < 1:357791/93‑1 (MQ=255)
|
CCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGA > NC_000913/1997949‑1998126
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACGCCA > NC_000913/1997948‑1998131
|
ACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCG > SRR4302535.4018790/1‑94 (MQ=60)
CCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGG > SRR4302535.298170/1‑94 (MQ=60)
CCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGG > SRR4302535.876894/1‑94 (MQ=60)
CCCTCTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGG < SRR4302535.1740480/94‑1 (MQ=60)
CCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGT < SRR4302535.4397865/94‑1 (MQ=60)
CACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTT > SRR4302535.1538887/1‑94 (MQ=60)
CTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGA > SRR4302535.2519181/1‑94 (MQ=60)
TTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGA > SRR4302535.1582910/1‑94 (MQ=60)
TGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATC > SRR4302535.3749151/1‑94 (MQ=60)
GCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCG < SRR4302535.1215758/94‑1 (MQ=60)
CTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGGTGAGAAATCGTA > SRR4302535.2277763/1‑94 (MQ=60)
TCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTT < SRR4302535.4160149/94‑1 (MQ=60)
AGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTT < SRR4302535.1447485/94‑1 (MQ=60)
AGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATAGCATTTTT > SRR4302535.2751827/1‑94 (MQ=60)
ATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTC > SRR4302535.2580656/1‑94 (MQ=60)
CATCGGCTGTTTTAATGGTGCCTTGCTAACCTTTTTT‑ACCAGCGCCTGAATTACACGAATGGTGTGGGGGGTTGAGAAATTGGATTTTTTCTTT > SRR4302535.2069837/1‑94 (MQ=18)
CATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTT < SRR4302535.3875849/94‑1 (MQ=60)
ATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTG > SRR4302535.3047894/1‑94 (MQ=60)
CGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCG < SRR4302535.3187710/94‑1 (MQ=60)
GGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGC > SRR4302535.1710732/1‑94 (MQ=60)
GGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGC > SRR4302535.4232871/1‑94 (MQ=60)
CTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTC > SRR4302535.569519/1‑94 (MQ=60)
CTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTC > SRR4302535.2437463/1‑94 (MQ=60)
TTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCA < SRR4302535.1588461/94‑1 (MQ=60)
TAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGA > SRR4302535.1865563/1‑94 (MQ=60)
TAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGA < SRR4302535.3070436/94‑1 (MQ=60)
AATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAA > SRR4302535.386456/1‑94 (MQ=60)
ATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAA < SRR4302535.827956/94‑1 (MQ=60)
ATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAA > SRR4302535.211509/1‑94 (MQ=60)
ATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAA > SRR4302535.2781233/1‑94 (MQ=60)
TGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAAT > SRR4302535.2098980/1‑94 (MQ=60)
TGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGCGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAAT < SRR4302535.2525329/94‑1 (MQ=60)
GCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTG < SRR4302535.2071238/94‑1 (MQ=60)
CTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGAC > SRR4302535.3416232/1‑94 (MQ=60)
TTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACC > SRR4302535.566350/1‑94 (MQ=60)
TCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCT < SRR4302535.1479592/94‑1 (MQ=60)
TCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCT > SRR4302535.525425/1‑94 (MQ=60)
CGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTG < SRR4302535.2204784/94‑1 (MQ=60)
CGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTG < SRR4302535.217769/94‑1 (MQ=60)
CGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTG > SRR4302535.1759900/1‑94 (MQ=60)
GTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGGAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGA > SRR4302535.751557/1‑94 (MQ=60)
TTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGAT > SRR4302535.4590463/1‑94 (MQ=60)
TTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGAT < SRR4302535.2423673/94‑1 (MQ=60)
TTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGAT < SRR4302535.3404721/94‑1 (MQ=60)
TACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATT > SRR4302535.1628556/1‑94 (MQ=60)
TACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATT < SRR4302535.3062103/94‑1 (MQ=60)
CTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAT < SRR4302535.2976925/94‑1 (MQ=60)
CTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAAT > SRR4302535.2248575/1‑94 (MQ=60)
TTTTTTCCCCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATC < SRR4302535.734841/94‑1 (MQ=60)
TTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCA < SRR4302535.547566/94‑1 (MQ=60)
TTTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCA < SRR4302535.4208947/94‑1 (MQ=60)
TTTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCAC > SRR4302535.57050/1‑94 (MQ=60)
TTTCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACC < SRR4302535.281328/94‑1 (MQ=60)
TCACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCAC < SRR4302535.2510601/94‑1 (MQ=60)
CACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACA > SRR4302535.1440766/1‑94 (MQ=60)
CACCAGCGCCTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACA > SRR4302535.182675/1‑94 (MQ=60)
CTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGT > SRR4302535.4503203/1‑94 (MQ=60)
CTGAATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGT > SRR4302535.3160230/1‑94 (MQ=60)
ATACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAG > SRR4302535.1610839/1‑94 (MQ=60)
ACCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAG > SRR4302535.152402/1‑94 (MQ=60)
CCAGAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGT < SRR4302535.2886099/94‑1 (MQ=60)
GAAATGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCA < SRR4302535.3873411/94‑1 (MQ=60)
AAATGTTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAG < SRR4302535.2961480/94‑1 (MQ=60)
TGGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCGGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGA > SRR4302535.2530587/1‑94 (MQ=60)
GGTGTGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGAC < SRR4302535.360265/94‑1 (MQ=60)
TGCGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACGCCA > SRR4302535.3429928/1‑94 (MQ=60)
|
ACCCCCACTTTTTTGCCTTTCAGATCATCGGCTGTTTTAATGGTGCCTTCGTTACCTTTTTTCACCAGCGCCTGAATACCAGAAATGGTGTACGGGGTTGAGAAATCGTATTTTTTCTTGCGCTCATCAGAAATGGTGACCTGATTAATCACCACATCAATACGTTTAGAGTCCAGCGACGCCA > NC_000913/1997948‑1998131
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
