Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,010,514 |
T→C |
intergenic (‑141/‑10) |
yedM ← / → b1936 |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,010,514 | 0 | T | C | 100.0%
| 405.1
/ NA
| 127 | intergenic (‑141/‑10) | yedM/b1936 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (92/35); total (92/35) |
Only 100 of 131 total aligned reads displayed.
AATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATC > NC_000913/2010424‑2010603
|
aaTAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGt < 2:1424022/93‑1 (MQ=255)
aTAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGtt > 1:4539861/1‑93 (MQ=255)
aTAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGtt > 2:3406011/1‑93 (MQ=255)
tAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTg > 2:2260336/1‑93 (MQ=255)
aaaaTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGc < 2:1562200/93‑1 (MQ=255)
aaaaTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGc > 2:3945927/1‑93 (MQ=255)
aaaaTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGc < 2:2165927/93‑1 (MQ=255)
aaaTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCg > 1:1043737/1‑93 (MQ=255)
aaaTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCg < 1:992894/93‑1 (MQ=255)
aaTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGt > 2:2090681/1‑93 (MQ=255)
aTTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTc > 1:1242547/1‑93 (MQ=255)
atACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCt < 2:1961243/92‑1 (MQ=255)
aCCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCtgt < 2:1726782/93‑1 (MQ=255)
cACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTgg < 1:2656437/93‑1 (MQ=255)
aCTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGt > 2:3895804/1‑93 (MQ=255)
aCTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGt > 1:3505249/1‑93 (MQ=255)
aCTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGt > 1:4511590/1‑93 (MQ=255)
cTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTc > 1:388860/1‑93 (MQ=255)
cTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTc > 2:4361463/1‑93 (MQ=255)
tATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCg > 2:3898304/1‑93 (MQ=255)
tATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCg > 1:3488937/1‑93 (MQ=255)
tATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCg < 1:58897/93‑1 (MQ=255)
aTCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGt > 1:1041845/1‑93 (MQ=255)
tCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTa > 1:4262768/1‑93 (MQ=255)
tCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTa > 2:36959/1‑93 (MQ=255)
aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTaac > 1:3688863/1‑93 (MQ=255)
aaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTaacaa > 1:318210/1‑93 (MQ=255)
aaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTaacaa > 1:480670/1‑93 (MQ=255)
aaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTaacaac > 2:548469/1‑93 (MQ=255)
aaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTaacaac > 2:1483905/1‑93 (MQ=255)
aTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAacaaca > 1:759707/1‑93 (MQ=255)
tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGa > 1:2028127/1‑93 (MQ=255)
tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGa > 2:2862937/1‑93 (MQ=255)
tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGa > 1:4468059/1‑93 (MQ=255)
ccATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGa < 2:1691126/92‑1 (MQ=255)
cATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGAc > 2:2902618/1‑93 (MQ=255)
cATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGAc > 2:1605778/1‑93 (MQ=255)
tatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACgt < 1:4659683/93‑1 (MQ=255)
tatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACgt < 1:3002068/93‑1 (MQ=255)
tatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTCCGTCTTTGGTCGTAACAAAATCCGACgg > 2:1376965/1‑92 (MQ=255)
atCCATCGCCCGGAATATGCATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACgtg > 2:4555087/1‑93 (MQ=255)
ccATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACgtggt < 2:3687165/93‑1 (MQ=255)
ccATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACgtggt > 1:3187927/1‑93 (MQ=255)
cATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACgtggtg > 1:2121080/1‑93 (MQ=255)
aTCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGa > 1:3131730/1‑93 (MQ=255)
gCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGAtgt < 1:4320213/93‑1 (MQ=255)
gCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGAtgt < 1:491745/93‑1 (MQ=255)
gCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGAtgt > 2:2402382/1‑93 (MQ=255)
ccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATgtgt > 2:1194413/1‑93 (MQ=255)
atatGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAAAAACATACGACGTGGTGATGTGTCAAAt > 1:1986739/1‑93 (MQ=255)
tatGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATg > 2:3745681/1‑93 (MQ=255)
tatGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATg > 2:1229983/1‑93 (MQ=255)
atGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATga > 1:1427964/1‑93 (MQ=255)
gAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATgaga < 2:3543350/93‑1 (MQ=255)
aTAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACg > 2:2885601/1‑93 (MQ=255)
aTAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACg > 1:2932198/1‑93 (MQ=255)
aTAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACg > 1:1055156/1‑93 (MQ=255)
tAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGc > 1:169463/1‑93 (MQ=255)
tAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGc < 2:1469263/93‑1 (MQ=255)
tAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGc < 2:3139069/93‑1 (MQ=255)
aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGctc > 1:1281098/1‑93 (MQ=255)
aaaaCATCAACAAAGATTAAATTATCCAGAGGCTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGctc > 2:2548520/1‑93 (MQ=255)
aaaCATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGctct > 2:810255/1‑93 (MQ=255)
aaaCATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGctct > 1:37336/1‑93 (MQ=255)
aaCATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCATATGAGACGCTCTg < 2:4502037/93‑1 (MQ=255)
aaCATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTg > 1:4573453/1‑93 (MQ=255)
cATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGAt > 1:4669783/1‑93 (MQ=255)
aTCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATg > 1:185219/1‑93 (MQ=255)
tCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGt > 1:3976011/1‑93 (MQ=255)
caacaaAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGtt > 1:784644/1‑93 (MQ=255)
caacaaAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGCGGTGATGTGTCAAATGAGACGCTCTGATGtt > 2:3475788/1‑93 (MQ=255)
acaaAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCa > 1:2496362/1‑93 (MQ=255)
caaAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAg > 1:2897197/1‑93 (MQ=255)
aaaaGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAg < 1:877121/92‑1 (MQ=255)
aaaGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAgg > 2:205736/1‑93 (MQ=255)
aaGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAggg > 1:3634353/1‑93 (MQ=255)
aaGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATCAGACGCTCTGATGTTCAggg > 2:1603589/1‑93 (MQ=255)
gATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAggggg < 1:1389359/93‑1 (MQ=255)
tAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGtt > 2:706144/1‑93 (MQ=255)
aaaTTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTa > 1:2201495/1‑93 (MQ=255)
aaTTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTAt > 2:3147518/1‑93 (MQ=255)
aaTTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTAt > 1:3546921/1‑93 (MQ=255)
aaTTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTAt < 1:1128162/93‑1 (MQ=255)
aaTTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTAt > 1:1366145/1‑93 (MQ=255)
aTTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATc > 1:1981917/1‑93 (MQ=255)
aTCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTATcgcg > 1:561242/1‑93 (MQ=255)
tCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGt > 1:1765701/1‑93 (MQ=255)
accAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGACGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGt < 1:3293349/92‑1 (MQ=255)
ccAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGta < 1:626034/93‑1 (MQ=255)
agagGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGtata < 2:4342303/93‑1 (MQ=255)
gagGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATAc > 2:2003438/1‑93 (MQ=255)
gagGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATAc > 2:3337515/1‑93 (MQ=255)
gagGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATAc > 2:2658803/1‑93 (MQ=255)
gagGTTACCGTTGCGTCTGTAGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGCTCAGGAGGGTTATCGCGTATAc > 2:4357373/1‑93 (MQ=255)
ggTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACgg > 2:3651673/1‑93 (MQ=255)
gTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGa < 1:4310989/93‑1 (MQ=255)
gTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGa > 1:3912063/1‑93 (MQ=255)
ttACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGAt < 1:884807/93‑1 (MQ=255)
ttACCGTTGCGTCTGTGGTAGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGAt > 2:4573399/1‑93 (MQ=255)
tACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATc < 1:1394808/93‑1 (MQ=255)
|
AATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATC > NC_000913/2010424‑2010603
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGTGG > NC_000913/2010421‑2010607
|
CACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACC > SRR4302535.2707815/1‑94 (MQ=60)
ACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCG < SRR4302535.768064/94‑1 (MQ=60)
AATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTT > SRR4302535.4570913/1‑94 (MQ=60)
ATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTG > SRR4302535.3245886/1‑94 (MQ=60)
AAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCG > SRR4302535.1051135/1‑94 (MQ=60)
AAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCG < SRR4302535.4018684/94‑1 (MQ=60)
AAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGT < SRR4302535.999946/94‑1 (MQ=60)
AATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTC > SRR4302535.1251423/1‑94 (MQ=60)
CCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGG > SRR4302535.3033552/1‑94 (MQ=60)
CACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGT > SRR4302535.4542534/1‑94 (MQ=60)
CACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGT < SRR4302535.2675471/94‑1 (MQ=60)
CACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGT > SRR4302535.3529608/1‑94 (MQ=60)
ACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTC > SRR4302535.268036/1‑94 (MQ=60)
ACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTC > SRR4302535.391562/1‑94 (MQ=60)
CTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCG > SRR4302535.3513157/1‑94 (MQ=60)
TATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGT > SRR4302535.1049231/1‑94 (MQ=60)
TATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGT < SRR4302535.59329/94‑1 (MQ=60)
ATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTA > SRR4302535.4291961/1‑94 (MQ=60)
CAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAAC > SRR4302535.3714391/1‑94 (MQ=60)
AAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAA > SRR4302535.484040/1‑94 (MQ=60)
AAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAA > SRR4302535.320415/1‑94 (MQ=60)
AATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACA > SRR4302535.765060/1‑94 (MQ=60)
CTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGA > SRR4302535.2042748/1‑94 (MQ=60)
CTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGA > SRR4302535.4498716/1‑94 (MQ=60)
TATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTG < SRR4302535.4691200/94‑1 (MQ=60)
TATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTG < SRR4302535.3023112/94‑1 (MQ=60)
TCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGT > SRR4302535.3209974/1‑94 (MQ=60)
CCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTG > SRR4302535.2136375/1‑94 (MQ=60)
CATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGA > SRR4302535.3153540/1‑94 (MQ=60)
ATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGAT > SRR4302535.3591397/1‑94 (MQ=60)
GCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTG < SRR4302535.495193/94‑1 (MQ=60)
GCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTG < SRR4302535.4349767/94‑1 (MQ=60)
CCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTC > SRR4302535.843689/1‑94 (MQ=60)
GGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAA > SRR4302535.1241903/1‑94 (MQ=60)
AATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAAAAACATACGACGTGGTGATGTGTCAAAT > SRR4302535.2001045/1‑94 (MQ=60)
TATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGA > SRR4302535.1438155/1‑94 (MQ=60)
AATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACG > SRR4302535.1062659/1‑94 (MQ=60)
AATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACG > SRR4302535.2952843/1‑94 (MQ=60)
AATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACG > SRR4302535.1395120/1‑94 (MQ=60)
ATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGC > SRR4302535.170641/1‑94 (MQ=60)
AAAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTC > SRR4302535.1290241/1‑94 (MQ=60)
AAAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCT > SRR4302535.37624/1‑94 (MQ=60)
AAACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTG > SRR4302535.4604628/1‑94 (MQ=60)
ACATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGAT > SRR4302535.4701329/1‑94 (MQ=60)
CATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATG > SRR4302535.186496/1‑94 (MQ=60)
ATCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGT > SRR4302535.4003173/1‑94 (MQ=60)
TCAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTT > SRR4302535.790150/1‑94 (MQ=60)
CAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTC > SRR4302535.1949833/1‑94 (MQ=60)
CAACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTC > SRR4302535.606902/1‑94 (MQ=60)
AACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA > SRR4302535.2514370/1‑94 (MQ=60)
ACAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAG > SRR4302535.2917684/1‑94 (MQ=60)
CAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGG > SRR4302535.491912/1‑94 (MQ=60)
CAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGG < SRR4302535.2216373/94‑1 (MQ=60)
AAAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGG < SRR4302535.883331/94‑1 (MQ=60)
AAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGG > SRR4302535.3900689/1‑94 (MQ=60)
AAAGATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGG > SRR4302535.3659537/1‑94 (MQ=60)
GATTAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGG < SRR4302535.1399275/94‑1 (MQ=60)
TAAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTA > SRR4302535.2217185/1‑94 (MQ=60)
AAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTAT > SRR4302535.1375913/1‑94 (MQ=60)
AAATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTAT > SRR4302535.3571546/1‑94 (MQ=60)
AATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATC < SRR4302535.1136216/94‑1 (MQ=60)
AATTATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATC > SRR4302535.1996186/1‑94 (MQ=60)
TATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCG > SRR4302535.1580291/1‑94 (MQ=60)
TATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTATCGCG > SRR4302535.565166/1‑94 (MQ=60)
ATCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGT > SRR4302535.1778502/1‑94 (MQ=60)
TCCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGGCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTA > SRR4302535.4586895/1‑94 (MQ=60)
ACCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGACGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTA < SRR4302535.3316246/94‑1 (MQ=60)
CCAGAGGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTAT < SRR4302535.630388/94‑1 (MQ=60)
GGTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGA > SRR4302535.3938843/1‑94 (MQ=60)
GTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGAT < SRR4302535.4472727/94‑1 (MQ=60)
GTTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGAT < SRR4302535.4340479/94‑1 (MQ=60)
TTACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATC < SRR4302535.891068/94‑1 (MQ=60)
TACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCG > SRR4302535.3617350/1‑94 (MQ=60)
TACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCG < SRR4302535.1404768/94‑1 (MQ=60)
ACCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGT > SRR4302535.4258982/1‑94 (MQ=60)
CCGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGTG < SRR4302535.1828055/94‑1 (MQ=60)
CGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGTGG < SRR4302535.1056911/94‑1 (MQ=60)
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CACAATAAAATTACCACTATCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGTTATCGCGTATACGGATCGTGG > NC_000913/2010421‑2010607
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
