Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,028,708 |
A→G |
V78A (GTG→GCG) |
vsr ← |
DNA mismatch endonuclease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,028,708 | 0 | A | G | 100.0%
| 407.1
/ NA
| 127 | V78A (GTG→GCG) | vsr | DNA mismatch endonuclease |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (57/70); total (57/70) |
Only 100 of 133 total aligned reads displayed.
CGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCACTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGT > NC_000913/2028619‑2028797
|
cGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCtt < 1:58159/93‑1 (MQ=255)
gAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCttt > 2:3146901/1‑93 (MQ=255)
aGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTa < 2:178248/93‑1 (MQ=255)
aGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTa > 2:2460053/1‑93 (MQ=255)
gTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTaa < 2:2933807/93‑1 (MQ=255)
ccTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACa > 2:2990310/1‑93 (MQ=255)
gCAAGCGACTGAAATCGCGGCGATCGCGCTCAACATTTTTACCTAGCTCCTCCAGCCAGAACTCGCTTCGAGTCGCAGGCGCTTTAAGCAGAt < 2:3593580/93‑1 (MQ=255)
cAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATa < 1:2228219/93‑1 (MQ=255)
cAAGCGACTGATATCGCGGCCATCGCGCTCAACATTTTTACCTATCTTCGCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATa < 2:167050/93‑1 (MQ=255)
aGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGc < 2:31317/93‑1 (MQ=255)
gCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCa > 2:4449761/1‑93 (MQ=255)
gACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCATAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGt < 2:3826102/93‑1 (MQ=255)
cTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtga < 1:2157816/93‑1 (MQ=255)
cTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtga < 1:3881076/93‑1 (MQ=255)
tGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgat > 1:4293308/1‑93 (MQ=255)
tGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgat > 1:4599000/1‑93 (MQ=255)
gATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatg > 2:569203/1‑93 (MQ=255)
atatCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatga < 1:1711991/93‑1 (MQ=255)
atatCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatga < 1:1450483/93‑1 (MQ=255)
tCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatgatga > 2:2301564/1‑93 (MQ=255)
tCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGtgatgatga < 1:2605164/93‑1 (MQ=255)
ggcgATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGcc > 2:924219/1‑93 (MQ=255)
ggcgATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGcc > 1:3783205/1‑93 (MQ=255)
ggcgATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGca > 2:4275419/1‑92 (MQ=255)
aTCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGaa < 2:2130227/93‑1 (MQ=255)
cgcgCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAagc > 2:1971590/1‑93 (MQ=255)
gcTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAagcagc > 2:500550/1‑93 (MQ=255)
gcTCAACATTTTTACCTATCTTCTCCAGACAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAagcagc > 2:3940405/1‑93 (MQ=255)
ccgcAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAagcagc < 2:3905018/90‑1 (MQ=255)
cTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGcc < 1:3093693/93‑1 (MQ=255)
cTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGcc < 2:3137206/93‑1 (MQ=255)
tCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCa < 1:2158620/93‑1 (MQ=255)
tCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCa > 1:4651968/1‑93 (MQ=255)
cAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCAt < 2:2293684/93‑1 (MQ=255)
cAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCAt < 1:3883535/93‑1 (MQ=255)
cAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGACGATGATGCCAGAAGCAGCCAt < 1:3868668/93‑1 (MQ=255)
aaCATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATg > 2:4670920/1‑93 (MQ=255)
aaCATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATg < 1:1692101/93‑1 (MQ=255)
aaCATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATg > 2:172296/1‑93 (MQ=255)
aaCATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATg > 1:3688576/1‑93 (MQ=255)
aaCATTTTTACCAATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATg < 2:2442489/93‑1 (MQ=255)
aCATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATgg < 1:1243468/93‑1 (MQ=255)
aCATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATgg < 2:1001134/93‑1 (MQ=255)
aCATTTTTACCTATCTTCTCCAGACAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATgg > 2:1223787/1‑93 (MQ=255)
ttttACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTaa < 1:272540/93‑1 (MQ=255)
ttttACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTaa < 1:1820711/93‑1 (MQ=255)
tACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAata < 2:2674227/93‑1 (MQ=255)
aCCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAatat > 1:2570519/1‑93 (MQ=255)
ccTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATc < 1:3521497/93‑1 (MQ=255)
ccTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATc < 2:4441502/93‑1 (MQ=255)
ccTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATc < 1:3940788/93‑1 (MQ=255)
cTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCa > 2:859087/1‑93 (MQ=255)
cTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCa > 1:664809/1‑93 (MQ=255)
tATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCAc > 1:849889/1‑93 (MQ=255)
aTCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACg < 2:720550/93‑1 (MQ=255)
cttctCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCTGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCa < 1:2512301/93‑1 (MQ=255)
cttctCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCa < 2:1171680/93‑1 (MQ=255)
ttctCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAg > 2:4217238/1‑93 (MQ=255)
ttctCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAg > 2:942856/1‑93 (MQ=255)
tctcCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGc > 2:1304746/1‑93 (MQ=255)
tctcCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGc > 1:3487016/1‑93 (MQ=255)
tctcCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGc > 2:1540876/1‑93 (MQ=255)
tcCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGa < 2:601561/93‑1 (MQ=255)
cccagccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGa < 1:3836130/92‑1 (MQ=255)
ccagccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGat < 2:2556358/93‑1 (MQ=255)
ccagccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGat < 2:673734/93‑1 (MQ=255)
ccagccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGat < 1:239610/93‑1 (MQ=255)
cagccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGata > 2:3549467/1‑93 (MQ=255)
ccagAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATtc < 2:1959855/93‑1 (MQ=255)
cagAACGCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATtca < 2:74467/93‑1 (MQ=255)
agagCTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATtcat < 1:717381/93‑1 (MQ=255)
agAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATtcat < 1:2393374/93‑1 (MQ=255)
gAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATtcatc > 2:1846176/1‑93 (MQ=255)
gAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATtcatc > 2:3363202/1‑93 (MQ=255)
aaCTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATtcatca > 2:160428/1‑93 (MQ=255)
aaCTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATtcatca > 2:4630990/1‑93 (MQ=255)
cTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAAc > 1:181089/1‑93 (MQ=255)
cTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAAc < 1:2459847/93‑1 (MQ=255)
tCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACg > 1:889236/1‑93 (MQ=255)
tCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACg > 2:1473399/1‑93 (MQ=255)
cGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGa < 1:2135107/93‑1 (MQ=255)
ggTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGAc < 2:636565/93‑1 (MQ=255)
gTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACa > 1:1011497/1‑93 (MQ=255)
gTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACa < 2:4159659/93‑1 (MQ=255)
gTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACa > 1:4115946/1‑93 (MQ=255)
cGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACaaaa < 2:1505804/93‑1 (MQ=255)
gAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAAt < 2:3374991/93‑1 (MQ=255)
aGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATc < 2:4172670/93‑1 (MQ=255)
aGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATc < 1:1447723/93‑1 (MQ=255)
aGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATc > 2:2930932/1‑93 (MQ=255)
gTCTCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATcc < 2:2584929/93‑1 (MQ=255)
gTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATcc < 1:1780029/93‑1 (MQ=255)
cGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGAGATATTCATCAAAGACAAAATCCgg > 1:4394893/1‑93 (MQ=255)
gCAGTCGCTTTAAATATATAGCAGTGATGATGATGCCAGAAGCATCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGa < 2:349442/93‑1 (MQ=255)
gCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGa > 2:2066627/1‑93 (MQ=255)
gCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGa > 1:1641710/1‑93 (MQ=255)
aGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACg > 2:244017/1‑93 (MQ=255)
aGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACg > 2:1414956/1‑93 (MQ=255)
ggCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGt > 2:3399812/1‑93 (MQ=255)
ggCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGt > 1:3451735/1‑93 (MQ=255)
|
CGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCACTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGT > NC_000913/2028619‑2028797
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCACTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGT > NC_000913/2028615‑2028797
|
CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCG < SRR4302535.2179428/94‑1 (MQ=60)
CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCG > SRR4302535.2036368/1‑94 (MQ=60)
AGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGC > SRR4302535.4376512/1‑94 (MQ=60)
AGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGC < SRR4302535.3649199/94‑1 (MQ=60)
CGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTT < SRR4302535.58586/94‑1 (MQ=60)
CAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAG < SRR4302535.2244069/94‑1 (MQ=60)
ACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGA > SRR4302535.584562/1‑94 (MQ=60)
CTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGAT > SRR4302535.4322685/1‑94 (MQ=60)
CTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGAT > SRR4302535.4630286/1‑94 (MQ=60)
CTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGAT < SRR4302535.2173324/94‑1 (MQ=60)
CTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGAT < SRR4302535.3907712/94‑1 (MQ=60)
ATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGAT < SRR4302535.1724370/94‑1 (MQ=60)
ATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGAT < SRR4302535.1460859/94‑1 (MQ=60)
TCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGAT < SRR4302535.432684/94‑1 (MQ=60)
TCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGAT < SRR4302535.2623863/94‑1 (MQ=60)
CGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCC > SRR4302535.3809308/1‑94 (MQ=60)
GCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAG < SRR4302535.3557683/94‑1 (MQ=60)
CTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCA > SRR4302535.810804/1‑94 (MQ=60)
CTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCA > SRR4302535.4683466/1‑94 (MQ=60)
CTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCA < SRR4302535.3115237/94‑1 (MQ=60)
TCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCAT < SRR4302535.2174129/94‑1 (MQ=60)
CAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATG > SRR4302535.3714102/1‑94 (MQ=60)
CAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATG < SRR4302535.3910177/94‑1 (MQ=60)
CAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGACGATGATGCCAGAAGCAGCCATG < SRR4302535.3895261/94‑1 (MQ=60)
AACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGG < SRR4302535.1704342/94‑1 (MQ=60)
ACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGG < SRR4302535.1252348/94‑1 (MQ=60)
TTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAA < SRR4302535.274437/94‑1 (MQ=60)
TTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAA < SRR4302535.1833866/94‑1 (MQ=60)
TACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATAT > SRR4302535.2589001/1‑94 (MQ=60)
TACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATAT > SRR4302535.1866376/1‑94 (MQ=60)
CCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCA < SRR4302535.3967690/94‑1 (MQ=60)
CCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCA < SRR4302535.3545955/94‑1 (MQ=60)
CCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCA > SRR4302535.669453/1‑94 (MQ=60)
CCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCA < SRR4302535.1580993/94‑1 (MQ=60)
CTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCAC > SRR4302535.855875/1‑94 (MQ=60)
cctgCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCA < SRR4302535.3913354/90‑1 (MQ=60)
CTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCTGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAG < SRR4302535.2530412/94‑1 (MQ=60)
TTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGC > SRR4302535.3511224/1‑94 (MQ=60)
TTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGC < SRR4302535.1773895/94‑1 (MQ=60)
CCCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGAT < SRR4302535.3862581/94‑1 (MQ=60)
CCAGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATA < SRR4302535.241255/94‑1 (MQ=60)
AGCCAGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATT < SRR4302535.325796/94‑1 (MQ=60)
AGAGCTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATC < SRR4302535.722421/94‑1 (MQ=60)
AGAACTCGGTTCGAGTCGCAGGNNCNTNAAACAGANANCAGTGATGATGNNNNCNNAAGCANCNATNGGnnannnncnngnannnntnnnnnnc > SRR4302535.412646/1‑69 (MQ=42)
AGAACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATC < SRR4302535.2410576/94‑1 (MQ=60)
ACTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAAC > SRR4302535.182347/1‑94 (MQ=60)
CTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACG > SRR4302535.895538/1‑94 (MQ=60)
CTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACG > SRR4302535.2439234/1‑94 (MQ=60)
CTCGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACG < SRR4302535.2477583/94‑1 (MQ=60)
CGGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGAC < SRR4302535.2150491/94‑1 (MQ=60)
GGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACA > SRR4302535.4144117/1‑94 (MQ=60)
GGTTCGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACA > SRR4302535.1018682/1‑94 (MQ=60)
CGAGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAAT < SRR4302535.260731/94‑1 (MQ=60)
AGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCC > SRR4302535.2191710/1‑94 (MQ=60)
AGTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCC < SRR4302535.1458074/94‑1 (MQ=60)
GTCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCG < SRR4302535.1792915/94‑1 (MQ=60)
TCGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGAGATATTCATCAAAGACAAAATCCGG > SRR4302535.4424969/1‑94 (MQ=60)
CGCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGA > SRR4302535.1653579/1‑94 (MQ=60)
GCAGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGAC > SRR4302535.3884343/1‑94 (MQ=60)
AGGCGCTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGT > SRR4302535.3475727/1‑94 (MQ=60)
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CAGCCGAGTTCCTGCAAGCGACTGATATCGCGGCGATCGCGCTCAACATTTTTACCTATCTTCTCCAGCCAGAACTCGGTTCGAGTCGCAGGCACTTTAAACAGATAGCAGTGATGATGATGCCAGAAGCAGCCATGGGTAAATATCACGCAGCGATATTCATCAACGACAAAATCCGGACGT > NC_000913/2028615‑2028797
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
