Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,044,033 |
(C)5→6 |
coding (1149/7152 nt) |
b1978 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,044,028 | 1 | . | C | 91.8%
| 311.3
/ 21.7
| 110 | coding (1144/7152 nt) | b1978 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/8); new base C (64/37); total (65/45) |
| Fisher's exact test for biased strand distribution p-value = 3.21e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.24e-01 |
Only 100 of 127 total aligned reads displayed.
TCTATGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCT > NC_000913/2043936‑2044115
|
tCTATGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACtat‑a < 2:2442755/93‑1 (MQ=255)
tCTATGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACtat‑a < 1:1923187/93‑1 (MQ=255)
tCTATGAACAGTATTATGGCGATGAAGTCGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACtat‑a < 1:4240752/93‑1 (MQ=255)
cTATGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑c < 2:2650368/93‑1 (MQ=255)
tATGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cc < 2:3408421/93‑1 (MQ=255)
tGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cccc < 1:1054648/93‑1 (MQ=255)
aaCAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cccccc > 2:4339351/1‑92 (MQ=255)
aaCAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑CCCCCt < 2:2966114/93‑1 (MQ=255)
aCAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGCCGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cccccct < 2:1525561/93‑3 (MQ=255)
aCAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cccccct > 1:1554251/1‑91 (MQ=255)
aCAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cccccct < 1:3422196/93‑3 (MQ=255)
aCAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cccccct < 2:1099724/93‑3 (MQ=255)
aCAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cccccct < 2:1651614/93‑3 (MQ=255)
cAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑cccccctt > 2:2439615/1‑90 (MQ=255)
aGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑ccccccttc < 1:1530526/93‑5 (MQ=255)
tattatGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTccc > 1:4427159/1‑93 (MQ=255)
tattatGGCGATGAAGTGGCCCGGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGAACTTAACTAT‑ACCCCCCTTccc < 1:1749349/93‑1 (MQ=255)
tatgatGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTccc < 1:3214557/93‑1 (MQ=255)
attatGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTcccc > 2:2146165/1‑92 (MQ=255)
ttatGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGc > 1:2979259/1‑93 (MQ=255)
ttatGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGc > 1:4191394/1‑93 (MQ=255)
tatGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCt < 1:3654297/93‑1 (MQ=255)
tGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCtga > 2:1668696/1‑93 (MQ=255)
aTGAAGTGCCCGTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGAcc < 2:923122/93‑1 (MQ=255)
tGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCt > 1:303837/1‑93 (MQ=255)
tGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCt > 1:698911/1‑93 (MQ=255)
tGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCt < 1:4418275/93‑1 (MQ=255)
tGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCt > 2:3071643/1‑93 (MQ=255)
gAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCtt < 2:2568035/93‑1 (MQ=255)
aaGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTc > 1:681748/1‑93 (MQ=255)
aaGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTc > 2:1478776/1‑93 (MQ=255)
aaGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTc < 2:3047369/93‑1 (MQ=255)
aGTGGCCCTGTTCGATAAAGACGATCTGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTATGC‑CCCCCTTCCCGCTGATGACCTTCa < 2:3060914/93‑1 (MQ=255)
aGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCa > 2:1886272/1‑93 (MQ=255)
gTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAg < 2:293374/93‑1 (MQ=255)
gggCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAgc < 1:2770645/92‑1 (MQ=255)
ccTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCgg > 1:440536/1‑93 (MQ=255)
ccTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCgg > 2:4470694/1‑93 (MQ=255)
ccTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCgg < 1:2422937/93‑1 (MQ=255)
cTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGa > 1:3662500/1‑93 (MQ=255)
cTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGa > 2:3585506/1‑93 (MQ=255)
cTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGa > 1:608238/1‑93 (MQ=255)
cTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGa > 1:891892/1‑93 (MQ=255)
cTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGa < 2:1840621/93‑1 (MQ=255)
gTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGc > 1:4268505/1‑93 (MQ=255)
tgATAAAGACAATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAAc < 2:2472548/92‑1 (MQ=255)
cGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTATCTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAAc < 1:3304289/93‑1 (MQ=255)
gATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACg > 1:2058447/1‑93 (MQ=255)
tAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGcc > 2:663007/1‑93 (MQ=255)
tAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGcc > 2:1649579/1‑93 (MQ=255)
aaGACGATCGGCAAAGTAATCCTCATGCCATAACCTCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAg < 1:4019901/93‑1 (MQ=255)
aaGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAg < 2:566785/93‑1 (MQ=255)
aaGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAAAGCCAg > 2:613643/1‑93 (MQ=255)
aGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAgg > 1:1786356/1‑93 (MQ=255)
gATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTaa > 2:2680751/1‑93 (MQ=255)
caccGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTaa < 2:3087803/90‑1 (MQ=255)
cGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACa < 2:1010353/93‑1 (MQ=255)
gtcAAAGTAATCCTCAGGCCATAACCGCTGGACTTAACTATCC‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAg < 2:2787973/91‑1 (MQ=255)
cgCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAg < 2:3133567/92‑1 (MQ=255)
gCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTATCC‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAgg < 1:953741/93‑1 (MQ=255)
gCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAgg > 2:2119008/1‑93 (MQ=255)
gCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAgg > 1:1884368/1‑93 (MQ=255)
gCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAgg < 1:4668131/93‑1 (MQ=255)
cAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTATCC‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAggg < 1:31416/93‑1 (MQ=255)
cAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAggg > 1:1977251/1‑93 (MQ=255)
cAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAggg < 1:1430526/93‑1 (MQ=255)
aaaGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCTGGGTAAACAGGGc < 2:4685670/93‑1 (MQ=255)
aaaGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGc > 1:4599510/1‑93 (MQ=255)
gTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGaa > 1:3234634/1‑93 (MQ=255)
tAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGaaa > 1:1443010/1‑93 (MQ=255)
tAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGaaa > 1:4634709/1‑93 (MQ=255)
tAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGaaa > 2:3070747/1‑93 (MQ=255)
aaTCCTCATGCCATAACCGCTGGACTTAACTATCC‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGaaaa < 2:4306773/93‑1 (MQ=255)
aTCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAAt < 2:3169996/93‑1 (MQ=255)
tCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATg < 1:2839584/93‑1 (MQ=255)
ccTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGa < 1:314027/93‑1 (MQ=255)
cTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGac > 2:1212234/1‑93 (MQ=255)
tCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGaca > 2:2359117/1‑93 (MQ=255)
cATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGacac < 2:718206/93‑1 (MQ=255)
tGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACAccc < 2:3887796/93‑1 (MQ=255)
tGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACAccc > 2:4177931/1‑93 (MQ=255)
aTAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGTCAGGGTAAACAGGGCGAAAATGACACCCGttt > 2:2023375/1‑93 (MQ=255)
aTAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGttt > 2:237644/1‑93 (MQ=255)
tAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAACCAGGGCGAAAATGACACCCGtctt > 2:3891188/1‑93 (MQ=255)
tAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGtttt > 1:3396856/1‑93 (MQ=255)
tAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGtttt < 1:2857463/93‑1 (MQ=255)
tAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGtttt > 2:3509061/1‑93 (MQ=255)
aCCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGc < 2:2300469/93‑1 (MQ=255)
aCCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGc > 2:922071/1‑93 (MQ=255)
cGCTGGACTTAACTATCC‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCg < 1:2586721/93‑1 (MQ=255)
cGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCg < 1:2940906/93‑1 (MQ=255)
cTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTc < 1:651842/93‑1 (MQ=255)
tGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCg > 1:329270/1‑93 (MQ=255)
gACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGAt > 2:328763/1‑93 (MQ=255)
aCTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGAtt > 2:2610033/1‑93 (MQ=255)
cTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGAttt < 1:1393736/93‑1 (MQ=255)
ttAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGAtttt > 2:1417310/1‑93 (MQ=255)
tAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTa > 2:2452996/1‑93 (MQ=255)
cTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTacct < 2:4318915/93‑1 (MQ=255)
cTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTacct < 2:276539/93‑1 (MQ=255)
|
TCTATGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCT > NC_000913/2043936‑2044115
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCTGG > NC_000913/2043940‑2044125
|
TGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑CCCCC < SRR4302535.1062149/94‑1 (MQ=60)
AACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑CCCCCCT > SRR4302535.1565449/1‑94 (MQ=60)
ACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑CCCCCctt < SRR4302535.3446000/94‑4 (MQ=60)
AGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCC < SRR4302535.1541551/94‑1 (MQ=60)
GTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCC > SRR4302535.4457486/1‑94 (MQ=60)
TATTATGGCGATGAAGTGGCCCGGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGAACTTAACTAT‑ACCCCCCTTCCCG < SRR4302535.1762003/94‑1 (MQ=60)
TATGATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCG < SRR4302535.3236823/94‑1 (MQ=60)
ATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGC > SRR4302535.4220078/1‑94 (MQ=60)
ATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGC > SRR4302535.3000161/1‑94 (MQ=60)
TATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTG < SRR4302535.3679597/94‑1 (MQ=60)
ATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCT > SRR4302535.703814/1‑94 (MQ=60)
ATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCT > SRR4302535.305945/1‑94 (MQ=60)
TGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTT < SRR4302535.4448526/94‑1 (MQ=60)
GAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTC > SRR4302535.686521/1‑94 (MQ=60)
GGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCG < SRR4302535.2790376/94‑1 (MQ=60)
GGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGC > SRR4302535.464212/1‑94 (MQ=60)
GGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGC > SRR4302535.3956695/1‑94 (MQ=60)
CCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGG > SRR4302535.443620/1‑94 (MQ=60)
CCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGA > SRR4302535.612480/1‑94 (MQ=60)
CCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGA < SRR4302535.2440392/94‑1 (MQ=60)
CCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGA > SRR4302535.898212/1‑94 (MQ=60)
CCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGA > SRR4302535.3687860/1‑94 (MQ=60)
TGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGC > SRR4302535.4297731/1‑94 (MQ=60)
CGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTATCTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACG < SRR4302535.3327274/94‑1 (MQ=60)
CGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACG > SRR4302535.2073277/1‑94 (MQ=60)
GATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGC > SRR4302535.1475382/1‑94 (MQ=60)
AAGACGATCGGCAAAGTAATCCTCATGCCATAACCTCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGG < SRR4302535.4047407/94‑1 (MQ=60)
AAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGG > SRR4302535.1799281/1‑94 (MQ=60)
CGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAA > SRR4302535.2429514/1‑94 (MQ=60)
CGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAG > SRR4302535.4412021/1‑94 (MQ=60)
CGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAG < SRR4302535.3255032/94‑1 (MQ=60)
GGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGG > SRR4302535.1897949/1‑94 (MQ=60)
GCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTATCC‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGG < SRR4302535.960497/94‑1 (MQ=60)
GCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGG > SRR4302535.1991494/1‑94 (MQ=60)
GCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGG < SRR4302535.4699674/94‑1 (MQ=60)
CAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTATCC‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGC < SRR4302535.31657/94‑1 (MQ=60)
CAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGC < SRR4302535.1440733/94‑1 (MQ=60)
CAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGC > SRR4302535.4630796/1‑94 (MQ=60)
AAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCG > SRR4302535.3018169/1‑94 (MQ=60)
AGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAA > SRR4302535.3257082/1‑94 (MQ=60)
GTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAA > SRR4302535.4666146/1‑94 (MQ=60)
GTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAA > SRR4302535.1453331/1‑94 (MQ=60)
TCCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGA < SRR4302535.2859727/94‑1 (MQ=60)
CCTCATGCCATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGAC < SRR4302535.316198/94‑1 (MQ=60)
ATAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTT > SRR4302535.3420490/1‑94 (MQ=60)
TAACCGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTG < SRR4302535.2877705/94‑1 (MQ=60)
CGCTGGACTTAACTATCC‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGT < SRR4302535.2605298/94‑1 (MQ=60)
CGCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGT < SRR4302535.2961583/94‑1 (MQ=60)
GCTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTG > SRR4302535.654431/1‑94 (MQ=60)
CTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCG > SRR4302535.331554/1‑94 (MQ=60)
CTGGACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCG < SRR4302535.656389/94‑1 (MQ=60)
GACTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATT > SRR4302535.3338524/1‑94 (MQ=60)
CTTAACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTT < SRR4302535.1403687/94‑1 (MQ=60)
AACTAT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACC > SRR4302535.1819502/1‑94 (MQ=60)
AT‑ACCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGC < SRR4302535.1586112/94‑1 (MQ=60)
AT‑ACCCCCCTGCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGC < SRR4302535.2169003/94‑1 (MQ=60)
acCCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAA < SRR4302535.425400/92‑1 (MQ=60)
C‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAAC < SRR4302535.473383/94‑1 (MQ=60)
CCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCT > SRR4302535.4701403/1‑94 (MQ=60)
CCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCT < SRR4302535.4271293/94‑1 (MQ=60)
CCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCTG < SRR4302535.985806/94‑1 (MQ=60)
CCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCTG > SRR4302535.2692169/1‑94 (MQ=60)
CCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCTGG < SRR4302535.4553673/94‑1 (MQ=60)
CCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCTGG > SRR4302535.407745/1‑94 (MQ=60)
CCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCTGG < SRR4302535.1302502/94‑1 (MQ=60)
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TGAACAGTATTATGGCGATGAAGTGGCCCTGTTCGATAAAGACGATCGGCAAAGTAATCCTCATGCCATAACCGCTGGACTTAACTAT‑A‑CCCCCTTCCCGCTGATGACCTTCAGCGCGGAGCAACGCCAGGGTAAACAGGGCGAAAATGACACCCGTTTTGCCGTCGATTTTACCTGGCAACCTGG > NC_000913/2043940‑2044125
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
