Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,065,866 |
T→C |
intergenic (‑523/‑764) |
trs56 ← / → b1995 |
IS5 transposase/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,065,866 | 0 | T | C | 99.3%
| 461.9
/ ‑4.5
| 147 | intergenic (‑523/‑764) | trs56/b1995 | IS5 transposase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (80/66); total (81/66) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.79e-01 |
Only 100 of 147 total aligned reads displayed.
CATTTTCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAATACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAG > NC_000913/2065777‑2065955
|
cATTTTCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACg > 1:424657/1‑93 (MQ=255)
ttttCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGaa < 2:4010048/93‑1 (MQ=255)
ttttCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGaa < 2:367368/93‑1 (MQ=255)
aGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGc > 1:3013864/1‑93 (MQ=255)
aGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGc > 2:4465161/1‑93 (MQ=255)
aGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCa > 1:3072963/1‑93 (MQ=255)
aGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCa < 1:3822919/93‑1 (MQ=255)
ctctCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAgg > 2:1921678/1‑93 (MQ=255)
tctcCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGa > 1:1190665/1‑93 (MQ=255)
tctcCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGa > 2:3938816/1‑93 (MQ=255)
tctcCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGa < 2:1243023/93‑1 (MQ=255)
ctcCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGAt < 2:709649/93‑1 (MQ=255)
ctcCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGAt < 2:2915616/93‑1 (MQ=255)
ctcCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGAt < 2:690091/93‑1 (MQ=255)
ccAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCa < 2:2708085/93‑1 (MQ=255)
cAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCAt < 1:2053090/93‑1 (MQ=255)
aGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTa > 2:2743959/1‑93 (MQ=255)
aGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTa < 2:2971898/93‑1 (MQ=255)
aGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTa > 2:1660220/1‑93 (MQ=255)
aGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTa > 2:3641279/1‑93 (MQ=255)
gAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAg < 1:1596539/93‑1 (MQ=255)
aaaGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAgt > 2:4276151/1‑93 (MQ=255)
aaaGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAgt < 1:1146060/93‑1 (MQ=255)
aaaGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAgt < 1:1661996/93‑1 (MQ=255)
aGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAgtgg > 1:373699/1‑93 (MQ=255)
gCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAgtggt > 2:2460788/1‑93 (MQ=255)
gCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAgtggt > 1:4059410/1‑93 (MQ=255)
cGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAgtggtg < 2:3045058/93‑1 (MQ=255)
cGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAgtggtg > 2:3012428/1‑93 (MQ=255)
aaTTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCt < 1:4388149/93‑1 (MQ=255)
aaTTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCt > 1:3985651/1‑93 (MQ=255)
aTTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTg > 2:1188285/1‑93 (MQ=255)
aTTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTg > 1:147954/1‑93 (MQ=255)
ttCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTga < 2:4152868/93‑1 (MQ=255)
ttttCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGaa < 2:1443581/93‑1 (MQ=255)
ttttCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGaa > 2:2206154/1‑93 (MQ=255)
ttttCTCAAATTCTGCATTCTCAGACACAGATTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGaa > 1:3177608/1‑93 (MQ=255)
tttCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAg > 1:752348/1‑93 (MQ=255)
tttCTCAAATTCTGCATTCTCAGACACAGCTTTCTACCCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAg > 2:279825/1‑93 (MQ=255)
ttCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGAGGTGCTGAGAAGt < 1:2538144/93‑1 (MQ=255)
tctcAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGtt > 1:3463550/1‑93 (MQ=255)
tcAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTaa > 2:3931515/1‑93 (MQ=255)
cAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTaaa > 1:2665118/1‑93 (MQ=255)
cAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTaaa < 1:431679/93‑1 (MQ=255)
aTTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATaa > 1:1828903/1‑93 (MQ=255)
ttCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAAc < 1:1364320/93‑1 (MQ=255)
tCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAAcc < 1:2630266/93‑1 (MQ=255)
cTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCa < 1:2410533/93‑1 (MQ=255)
cTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCa < 1:3465948/93‑1 (MQ=255)
tGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCAt > 1:459582/1‑93 (MQ=255)
tGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCAt < 1:3410256/93‑1 (MQ=255)
gCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATg > 1:3956473/1‑93 (MQ=255)
gCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATg < 1:2993840/93‑1 (MQ=255)
gCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATg < 2:2893386/93‑1 (MQ=255)
cATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGc < 1:717814/93‑1 (MQ=255)
aTTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCg > 1:617399/1‑93 (MQ=255)
aTTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCg < 2:3944160/93‑1 (MQ=255)
aTTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCg > 2:4637341/1‑93 (MQ=255)
ttCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCgg > 2:1548187/1‑93 (MQ=255)
ttCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCgg > 2:2271349/1‑93 (MQ=255)
tcAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAga > 2:3074607/1‑92 (MQ=255)
tcAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGt > 1:1830926/1‑93 (MQ=255)
tcAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGt < 2:503390/93‑1 (MQ=255)
cAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTa > 2:3312964/1‑93 (MQ=255)
aGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTAc > 2:2225179/1‑93 (MQ=255)
gACACAGCTTTCTACTCCATGGTAATGGGCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTAca > 1:4547819/1‑92 (MQ=255)
gACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGACGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTAcc > 2:2790085/1‑93 (MQ=255)
gACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTAcc > 1:3370901/1‑93 (MQ=255)
gACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTAcc > 2:3685328/1‑93 (MQ=255)
gACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTAcc > 1:4030833/1‑93 (MQ=255)
gACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTAca > 2:3285936/1‑92 (MQ=255)
cacaGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCAc < 2:509474/93‑1 (MQ=255)
acaGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACt < 2:2699672/93‑1 (MQ=255)
acaGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACt > 1:4125696/1‑93 (MQ=255)
caGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTc > 2:2443343/1‑93 (MQ=255)
caGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTc > 1:3953594/1‑93 (MQ=255)
caGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTc > 2:1869556/1‑93 (MQ=255)
gCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCgc > 1:1122344/1‑92 (MQ=255)
cTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGtc < 1:2185477/93‑1 (MQ=255)
ttCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGtcat < 2:376223/93‑1 (MQ=255)
aCTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACg > 1:3747829/1‑93 (MQ=255)
cTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGt < 2:4177568/93‑1 (MQ=255)
ccATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTAt > 2:789056/1‑93 (MQ=255)
cATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTAtt < 1:407722/93‑1 (MQ=255)
ggTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTtat < 1:1223970/93‑1 (MQ=255)
gTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTtata < 2:2382089/93‑1 (MQ=255)
tAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTtatat < 2:1249786/93‑1 (MQ=255)
tAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCCGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTtatat < 2:885316/93‑1 (MQ=255)
aaTGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTtatata < 1:2457381/93‑1 (MQ=255)
aaTGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTtatata < 2:3225009/93‑1 (MQ=255)
aaTGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTtatata > 2:1369027/1‑93 (MQ=255)
tGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATc > 1:1333065/1‑93 (MQ=255)
tGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATc > 1:122724/1‑93 (MQ=255)
ggCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCa < 1:4222061/93‑1 (MQ=255)
gCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCAt < 2:3127566/93‑1 (MQ=255)
cccAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATg < 1:563838/93‑1 (MQ=255)
cAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGaa > 2:2030701/1‑93 (MQ=255)
cAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGaa < 1:3815890/93‑1 (MQ=255)
aaaCACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAg > 1:1403771/1‑93 (MQ=255)
aaaCACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAg > 2:2478056/1‑93 (MQ=255)
|
CATTTTCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAATACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAG > NC_000913/2065777‑2065955
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCATTTTCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAATACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAGCTAT > NC_000913/2065775‑2065959
|
GCCATTTTCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACAC < SRR4302535.740225/94‑1 (MQ=60)
CCATTTTCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACG > SRR4302535.427623/1‑94 (MQ=60)
TTCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTT > SRR4302535.354273/1‑94 (MQ=60)
TCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTG < SRR4302535.1381992/94‑1 (MQ=60)
CAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGC > SRR4302535.3034988/1‑94 (MQ=60)
AAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCA > SRR4302535.3094415/1‑94 (MQ=60)
AGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAG < SRR4302535.3849288/94‑1 (MQ=60)
CTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGA > SRR4302535.1199190/1‑94 (MQ=60)
CTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGA > SRR4302535.1229735/1‑94 (MQ=60)
CCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCAT > SRR4302535.3810262/1‑94 (MQ=60)
CAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATT < SRR4302535.2067878/94‑1 (MQ=60)
AAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTA < SRR4302535.2245109/94‑1 (MQ=60)
GAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGT < SRR4302535.1608055/94‑1 (MQ=60)
GAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGT > SRR4302535.3050314/1‑94 (MQ=60)
AAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTG < SRR4302535.1674004/94‑1 (MQ=60)
AAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTG > SRR4302535.3220960/1‑94 (MQ=60)
AAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTG < SRR4302535.1154228/94‑1 (MQ=60)
AAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGG > SRR4302535.376287/1‑94 (MQ=60)
AGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGT > SRR4302535.4087194/1‑94 (MQ=60)
GCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTG < SRR4302535.633270/94‑1 (MQ=60)
CGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGC > SRR4302535.1566130/1‑94 (MQ=60)
CGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGC > SRR4302535.4212459/1‑94 (MQ=60)
GAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCT > SRR4302535.4012889/1‑94 (MQ=60)
AATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTG > SRR4302535.148987/1‑94 (MQ=60)
AATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTG < SRR4302535.4418167/94‑1 (MQ=60)
CTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAA < SRR4302535.259836/94‑1 (MQ=60)
CTTTTCTCAAATTCTGCATTCTCAGACACAGATTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAA > SRR4302535.3199587/1‑94 (MQ=60)
TTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAG > SRR4302535.757645/1‑94 (MQ=60)
TTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTT < SRR4302535.1297268/94‑1 (MQ=60)
TTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTT > SRR4302535.3487625/1‑94 (MQ=60)
TTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTT > SRR4302535.3438208/1‑94 (MQ=60)
TTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGAGGTGCTGAGAAGTT < SRR4302535.2556426/94‑1 (MQ=60)
TCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAA > SRR4302535.2684200/1‑94 (MQ=60)
CAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAAT < SRR4302535.434685/94‑1 (MQ=60)
AATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAA > SRR4302535.4523098/1‑94 (MQ=60)
AATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAA > SRR4302535.1842105/1‑94 (MQ=60)
ATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAAC > SRR4302535.3933734/1‑94 (MQ=60)
ATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAAC > SRR4302535.1990445/1‑94 (MQ=60)
TTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACC < SRR4302535.1374076/94‑1 (MQ=60)
TCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCA < SRR4302535.2649109/94‑1 (MQ=60)
CTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCAT < SRR4302535.3490033/94‑1 (MQ=60)
CTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCAT > SRR4302535.462795/1‑94 (MQ=60)
CTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCAT < SRR4302535.3008732/94‑1 (MQ=60)
CTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCAT < SRR4302535.2427885/94‑1 (MQ=60)
CTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCAT > SRR4302535.462794/1‑94 (MQ=60)
TGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATG < SRR4302535.3433986/94‑1 (MQ=60)
TGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATG > SRR4302535.3983487/1‑94 (MQ=60)
GCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGC < SRR4302535.3014830/94‑1 (MQ=60)
CATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCG > SRR4302535.621693/1‑94 (MQ=60)
CATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCG < SRR4302535.183663/94‑1 (MQ=60)
CATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCG < SRR4302535.722857/94‑1 (MQ=60)
CTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGT > SRR4302535.1844140/1‑94 (MQ=60)
CTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGA > SRR4302535.4038029/1‑94 (MQ=60)
AGACACAGCTTTCTACTCCATGGTAATGGGCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACA > SRR4302535.4578914/1‑94 (MQ=60)
AGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACC > SRR4302535.3394352/1‑94 (MQ=60)
AGACACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACC > SRR4302535.4058409/1‑94 (MQ=60)
CACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACT > SRR4302535.4153931/1‑94 (MQ=60)
ACAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTC > SRR4302535.3980584/1‑94 (MQ=60)
CAGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCG > SRR4302535.4340220/1‑94 (MQ=60)
AGCTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGC > SRR4302535.1130353/1‑94 (MQ=60)
CTTTCTACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCA < SRR4302535.2201053/94‑1 (MQ=60)
TACTCCATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACG > SRR4302535.3773757/1‑94 (MQ=60)
CATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTT < SRR4302535.410579/94‑1 (MQ=60)
CATGGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTT < SRR4302535.410578/94‑1 (MQ=60)
GGTAATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATA < SRR4302535.1232726/94‑1 (MQ=60)
AATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATAT < SRR4302535.2475105/94‑1 (MQ=60)
ATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATC > SRR4302535.1342573/1‑94 (MQ=60)
ATGGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATC > SRR4302535.123586/1‑94 (MQ=60)
GGCCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCAT < SRR4302535.4250951/94‑1 (MQ=60)
CCCAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGA < SRR4302535.567785/94‑1 (MQ=60)
CAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAG < SRR4302535.3842217/94‑1 (MQ=60)
CAAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAG > SRR4302535.1413783/1‑94 (MQ=60)
AAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAGC > SRR4302535.3068698/1‑94 (MQ=60)
AAACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAGC > SRR4302535.2588661/1‑94 (MQ=60)
AACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAGCT > SRR4302535.4035261/1‑94 (MQ=60)
ACACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAGCTA < SRR4302535.77448/94‑1 (MQ=60)
CACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAGCTAT < SRR4302535.2005862/94‑1 (MQ=60)
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GCCATTTTCAGAAGCTCTCCAAGAAAGCGAATTCTTTTCTCAAATTCTGCATTCTCAGACACAGCTTTCTACTCCATGGTAATGGCCCAAATACGAAGTTGCTCAGGATCATTAGTGGTGCTGAGAAGTTAAATAACCATGCGGAGTACCACTCGTCATCACGTATTTATATATCATGAAGCTAT > NC_000913/2065775‑2065959
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
