Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,075,196 |
(G)5→4 |
coding (63/369 nt) |
yeeU → |
putative structural protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,075,192 | 0 | G | . | 99.2%
| 581.2
/ ‑3.2
| 130 | coding (59/369 nt) | yeeU | putative structural protein |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (64/65); total (65/65) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 143 total aligned reads displayed.
CCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGG > NC_000913/2075100‑2075279
|
ccATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCtggtg > 2:684421/1‑93 (MQ=255)
ttCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTgggg > 2:2397639/1‑93 (MQ=255)
tCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggggc > 1:4156076/1‑92 (MQ=255)
tCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTggggc > 1:1928568/1‑92 (MQ=255)
gCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGccc > 1:2384978/1‑93 (MQ=255)
gCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGccc < 1:4107698/93‑1 (MQ=255)
aTTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCa > 1:3522234/1‑93 (MQ=255)
ttttCTGTAAGGATTTTATTGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCAc > 2:4583612/1‑93 (MQ=255)
ttttCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCAc > 1:3375145/1‑93 (MQ=255)
tttCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCAcc < 2:4612938/93‑1 (MQ=255)
tCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGt < 2:3546275/93‑1 (MQ=255)
tGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGa < 1:3447003/93‑1 (MQ=255)
tGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGa > 2:2800418/1‑93 (MQ=255)
gTAAGGATTTTATCGTGTCAGCCACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGAc < 2:2552138/93‑1 (MQ=255)
gTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGAc > 1:1848242/1‑93 (MQ=255)
gTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGCGAc > 2:916446/1‑93 (MQ=255)
tAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACg > 1:4655957/1‑93 (MQ=255)
aaGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGc < 1:2347986/93‑1 (MQ=255)
aGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGcc < 1:2991327/93‑1 (MQ=255)
ggATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGGGACGccc > 2:1186960/1‑93 (MQ=255)
ggATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCAACGGGACGccc > 1:1211327/1‑93 (MQ=255)
ggATTTTACCGTGTCAGCCACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGccc < 1:1900131/93‑1 (MQ=255)
aTTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTg < 1:405482/93‑1 (MQ=255)
ttttATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGt > 2:1800906/1‑93 (MQ=255)
tttATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGtt > 2:1456606/1‑93 (MQ=255)
tttATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGtt < 2:3136834/93‑1 (MQ=255)
tATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTc < 2:1142945/93‑1 (MQ=255)
tATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTc < 2:3280856/93‑1 (MQ=255)
tCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCgg > 2:4435642/1‑93 (MQ=255)
tCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCgg < 1:539314/93‑1 (MQ=255)
tCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCACTGTTTCgg > 2:4039486/1‑93 (MQ=255)
cGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCggg > 1:3146892/1‑93 (MQ=255)
gtgtCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCgggg > 1:2165983/1‑93 (MQ=255)
tgtCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACCACCGCCCCTGGT‑GGGGCTGCGCTGCAGCGTGACGCCCTGTCTCtgggg > 1:4207341/1‑92 (MQ=255)
cAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACg > 2:702753/1‑93 (MQ=255)
aGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGt < 1:1719915/93‑1 (MQ=255)
gACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACggc > 2:145116/1‑91 (MQ=255)
gACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTc < 2:3057718/93‑1 (MQ=255)
gACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTc < 2:4275225/93‑1 (MQ=255)
gACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCCTGCCGCCCTGGTTCGGGGCTCGTc > 2:2750335/1‑93 (MQ=255)
aacacacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTc < 1:1418688/92‑1 (MQ=255)
cacacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTg > 1:3906707/1‑93 (MQ=255)
cacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTggg > 1:4610664/1‑92 (MQ=255)
cacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGt > 2:1084023/1‑93 (MQ=255)
cacTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGt < 1:4466688/93‑1 (MQ=255)
cTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGc > 1:4605331/1‑93 (MQ=255)
tCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCTTTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGct > 1:4682862/1‑92 (MQ=255)
tCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGcg > 2:3288828/1‑92 (MQ=255)
ccccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCag < 1:2766108/93‑1 (MQ=255)
ccccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCag < 1:531415/93‑1 (MQ=255)
cccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGGGCagg > 2:4031301/1‑93 (MQ=255)
ccGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCagga < 1:119268/93‑1 (MQ=255)
cGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggag < 1:4254113/93‑1 (MQ=255)
cGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggag < 2:189323/93‑1 (MQ=255)
gggACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggagg < 1:1814771/93‑1 (MQ=255)
gggACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCaggagg > 1:2165821/1‑93 (MQ=255)
ggACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGGGCAgggggg > 1:42910/1‑93 (MQ=255)
gACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCGGGTGCAGGAGGGt < 2:2874880/93‑1 (MQ=255)
acaacaCTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTa > 2:4176293/1‑93 (MQ=255)
acaacaCTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTa > 1:285239/1‑93 (MQ=255)
caacaCTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTaa < 2:3351775/93‑1 (MQ=255)
aacaCTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAAc < 2:2379488/93‑1 (MQ=255)
acacTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAAcc < 2:2628933/93‑1 (MQ=255)
acacTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAAcc > 2:2853626/1‑93 (MQ=255)
acTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCgg < 1:437640/93‑1 (MQ=255)
acTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCgg < 2:3037542/93‑1 (MQ=255)
cTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGGACCGTGGCGCTCTGTTTCGGGGCACGGCTGGTGGAGGAGGGGCACCGGt > 1:1752557/1‑93 (MQ=255)
cTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGGTTCGGGGTACGCCTGGAGCAGGAGGGTCATCGGt > 2:3603709/1‑93 (MQ=255)
ccGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCa < 2:2059645/93‑1 (MQ=255)
ccGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCa < 2:1822137/93‑1 (MQ=255)
cgactaCAATCTCGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCAt < 1:560382/93‑1 (MQ=255)
agacgacAATCACGCCCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTCCGGGCCACGTCTGGTGCAGGAGGGTAACCGGTTGCAt < 2:1724587/92‑1 (MQ=255)
acgacAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTa < 1:1862514/93‑1 (MQ=255)
acgacAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTa < 2:688536/93‑1 (MQ=255)
acgacAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTa < 2:752992/93‑1 (MQ=255)
gacAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTAcc < 2:3644851/93‑1 (MQ=255)
gacAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTAcc < 1:2965676/93‑1 (MQ=255)
acAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCt > 2:2415154/1‑93 (MQ=255)
acAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCt < 1:2797793/93‑1 (MQ=255)
cAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCtt < 1:328261/93‑1 (MQ=255)
cAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCtt < 1:4559350/93‑1 (MQ=255)
aaTCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTg > 1:2711053/1‑93 (MQ=255)
aTCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGGTGCATTACCTTGc > 2:3225905/1‑93 (MQ=255)
tCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGcc > 2:1571059/1‑93 (MQ=255)
tCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGTTGCATTACCTTgtc > 2:1046133/1‑91 (MQ=255)
cACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGGTGCATTACCTTGGCg > 2:923126/1‑93 (MQ=255)
ccGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGa < 2:1674866/92‑1 (MQ=255)
aCGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGa > 1:1521356/1‑93 (MQ=255)
aCGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGTTGCATTACCTTGCCGa > 1:2485311/1‑93 (MQ=255)
cGATCGCCCCTGG‑GGGGGCTGCCCGGCACTGTGACGCCCTGTTTCGGGGCACGGCTGGTGCAGGAGGGTAACCGGTTGGCTTTCCTTGGCggc > 2:1063669/1‑91 (MQ=255)
cGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGAc < 2:1114233/93‑1 (MQ=255)
cGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGAc < 1:656406/93‑1 (MQ=255)
aCCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACcg > 2:255872/1‑93 (MQ=255)
ccGCGCCTGGT‑GGGGCGTCCCTGCACCGTGACGTTCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACcgc < 2:4504163/93‑1 (MQ=37)
ccGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACcgc < 2:4052930/93‑1 (MQ=255)
ccGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACcgc < 2:564034/93‑1 (MQ=255)
ccccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGcc > 2:2196189/1‑93 (MQ=255)
cccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCg > 1:1348587/1‑93 (MQ=255)
ccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCgg > 2:3208488/1‑93 (MQ=255)
ccTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGTTGCATTACCTTGCCGACCGCGCCgg > 2:2293707/1‑93 (MQ=255)
|
CCATTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGG > NC_000913/2075100‑2075279
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAG > NC_000913/2075103‑2075287
|
TTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGC > SRR4302535.4184527/1‑94 (MQ=60)
TTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGC > SRR4302535.1942466/1‑94 (MQ=60)
AGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCC > SRR4302535.2402112/1‑94 (MQ=60)
GCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCT < SRR4302535.4135825/94‑1 (MQ=60)
CGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGC > SRR4302535.1666110/1‑94 (MQ=60)
GATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCA > SRR4302535.3546697/1‑94 (MQ=60)
ATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCAC > SRR4302535.3398619/1‑94 (MQ=60)
TTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACC > SRR4302535.190630/1‑94 (MQ=60)
TGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGAC < SRR4302535.3470972/94‑1 (MQ=60)
TGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGAC > SRR4302535.1861561/1‑94 (MQ=60)
GTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGTCCTGCACCGTGACG > SRR4302535.1816495/1‑94 (MQ=60)
GTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACG > SRR4302535.4687465/1‑94 (MQ=60)
AAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCC < SRR4302535.2364819/94‑1 (MQ=60)
AGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCC < SRR4302535.3012303/94‑1 (MQ=60)
AGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCAACGGGACGCCC > SRR4302535.1220024/1‑94 (MQ=60)
GGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCT > SRR4302535.482480/1‑94 (MQ=60)
GGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCT < SRR4302535.2951471/94‑1 (MQ=60)
GGATTTTACCGTGTCAGCCACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCT < SRR4302535.1913804/94‑1 (MQ=60)
ATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGT < SRR4302535.408322/94‑1 (MQ=60)
TTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTT < SRR4302535.1956392/94‑1 (MQ=60)
TTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTT > SRR4302535.2345731/1‑94 (MQ=60)
TTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTT < SRR4302535.568505/94‑1 (MQ=60)
TCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGG > SRR4302535.3168773/1‑94 (MQ=60)
TCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGG < SRR4302535.543077/94‑1 (MQ=60)
CGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGG > SRR4302535.2181511/1‑94 (MQ=60)
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACCACCGCCCCTGGT‑GGGGCTGCGCTGCAGCGTGACGCCCTGTctctgggg > SRR4302535.4236135/1‑86 (MQ=60)
AGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTC < SRR4302535.1732355/94‑1 (MQ=60)
GACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCT < SRR4302535.2573416/94‑1 (MQ=60)
AACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCT < SRR4302535.1428816/94‑1 (MQ=60)
ACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTG > SRR4302535.3933473/1‑94 (MQ=60)
ACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGG > SRR4302535.4641988/1‑94 (MQ=60)
CACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTG < SRR4302535.4497334/94‑1 (MQ=60)
ACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGC > SRR4302535.4636634/1‑94 (MQ=60)
CTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCTTTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCT > SRR4302535.4714523/1‑94 (MQ=60)
CCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGG < SRR4302535.2785807/94‑1 (MQ=60)
CCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGG < SRR4302535.535133/94‑1 (MQ=60)
CCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAG < SRR4302535.120103/94‑1 (MQ=60)
CGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGG < SRR4302535.4283260/94‑1 (MQ=60)
CGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGG > SRR4302535.2181348/1‑94 (MQ=60)
GGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGG < SRR4302535.1827893/94‑1 (MQ=60)
GGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGGGCAGGGGGG > SRR4302535.43234/1‑94 (MQ=60)
GACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTA > SRR4302535.287231/1‑94 (MQ=60)
ACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGTGCACGTCTGGTGGAGGAGGGGAA > SRR4302535.4243284/1‑94 (MQ=60)
ACAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAA > SRR4302535.2792572/1‑94 (MQ=60)
CAACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAAC > SRR4302535.4376773/1‑94 (MQ=60)
AACACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACC > SRR4302535.3259165/1‑94 (MQ=60)
ACCCTGCCCGACTACATTCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCG < SRR4302535.966220/94‑1 (MQ=60)
ACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGGACCGTGGCGCTCTGTTTCGGGGCACGGCTGGTGGAGGAGGGGCACCGGT > SRR4302535.1765223/1‑94 (MQ=60)
ACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGT > SRR4302535.4607420/1‑94 (MQ=60)
ACTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGT < SRR4302535.440701/94‑1 (MQ=60)
CTTCCCGACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTT > SRR4302535.3822215/1‑94 (MQ=60)
CGACTACAATCTCGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATT < SRR4302535.564301/94‑1 (MQ=60)
GACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTA < SRR4302535.4169887/94‑1 (MQ=60)
ACGACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTAC < SRR4302535.1875946/94‑1 (MQ=60)
GACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGTACGTCTGCGGGAGGAGGGGAACCGGGTGCCTTACCT > SRR4302535.496096/1‑94 (MQ=60)
GACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCT < SRR4302535.2986484/94‑1 (MQ=60)
ACAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTT < SRR4302535.2817703/94‑1 (MQ=60)
CAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTG < SRR4302535.4590475/94‑1 (MQ=60)
CAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTG > SRR4302535.2730429/1‑94 (MQ=60)
CAATCACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTG < SRR4302535.330538/94‑1 (MQ=60)
CACGACCGCCCCTGGT‑GGGGCTGCCCTTGACCGTGACGCCCTGTTTCGTGGCACGCCTGGTGCAGCAGGGGAACCGGTTGCAgcaacttccccc > SRR4302535.1948199/1‑82 (MQ=49)
CACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGA > SRR4302535.1532314/1‑94 (MQ=60)
CACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGA < SRR4302535.1372906/94‑1 (MQ=60)
CACGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGTTGCATTACCTTGCCGA > SRR4302535.2503228/1‑94 (MQ=60)
CGACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACC < SRR4302535.660987/94‑1 (MQ=60)
ACCGCCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGC > SRR4302535.3446936/1‑94 (MQ=60)
CCCCTGGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCG > SRR4302535.1358218/1‑94 (MQ=60)
CCTGGT‑GGGGCTGCCCCGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTAGCCGACCGCGCCGGT < SRR4302535.2775711/94‑1 (MQ=60)
GGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTCTC > SRR4302535.888201/1‑94 (MQ=60)
GGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATC < SRR4302535.2921284/94‑1 (MQ=60)
GGT‑GGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATC < SRR4302535.93667/94‑1 (MQ=60)
gtGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCA > SRR4302535.4162416/3‑94 (MQ=60)
gtGGGGCTGCCCTGCACCGTCACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGGAACCGGTTGCATTACCCTGCCGACCGCGtccgcatca > SRR4302535.1755292/3‑85 (MQ=60)
GTGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAG < SRR4302535.3068511/94‑1 (MQ=60)
GGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAG < SRR4302535.3577388/94‑1 (MQ=60)
GGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAG < SRR4302535.3626915/94‑1 (MQ=60)
GGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGGTGCATTACCTTGCCGACCGCGCCGGTATCAGAG > SRR4302535.4196138/1‑94 (MQ=60)
|
TTCTTAGCCGATTTTCTGTAAGGATTTTATCGTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGACGCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCGGTATCAGAG > NC_000913/2075103‑2075287
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
