Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	1873	183.1	9376148	98.2%	9207377	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,078,049	A→G	F189L (TTC→CTC)	yeeA ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,078,049	0	A	G	100.0%	402.6 / NA	126	F189L (TTC→CTC)	yeeA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (51/75); total (51/75)

Only 100 of 133 total aligned reads displayed.

GCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAATGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCGG  >  NC_000913/2077961‑2078138

gcAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCGGACGTGGGCATTCGAGTAAGTTCGGTGAGAGTGCa                                                                                       <  2:3802094/93‑1 (MQ=255)

gcAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCa                                                                                       >  2:447563/1‑93 (MQ=255)

 cAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAg                                                                                      >  1:2471919/1‑93 (MQ=255)

  aaTCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGa                                                                                     >  2:2010330/1‑93 (MQ=255)

  aaTCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGa                                                                                     <  1:1642363/93‑1 (MQ=255)

  aaTCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTGCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGa                                                                                     <  2:2898783/93‑1 (MQ=255)

   aTCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGGAAGTTCGGTGAGAGTGCAGAt                                                                                    >  1:3277475/1‑93 (MQ=255)

    tCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGAtt                                                                                   <  1:4425817/93‑1 (MQ=255)

     cAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTg                                                                                  <  2:2476810/93‑1 (MQ=255)

     cAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTg                                                                                  <  1:4091287/93‑1 (MQ=255)

       gTCCACGCATTTTCACGGCATCGGTCAGGCGGTTTTGTAGATGGCTTTCCAGACGGGGGCGTTCGAGTAAGTTCGGTGAGAGAGCCGATTTAt                                                                                >  1:2021965/1‑93 (MQ=255)

       gTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGAt                                                                                <  2:1699528/93‑1 (MQ=255)

       gTCCACGCATTTTCACGGCATCGGTCAGGAGGTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGAt                                                                                >  2:1970773/1‑93 (MQ=255)

        tCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATa                                                                               <  2:4183901/93‑1 (MQ=255)

        tCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATa                                                                               <  1:2036837/93‑1 (MQ=255)

         ccACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAg                                                                              <  1:394852/93‑1 (MQ=255)

         ccACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAg                                                                              <  2:3193991/93‑1 (MQ=255)

         ccACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAg                                                                              >  1:1318280/1‑93 (MQ=255)

          cACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGa                                                                             >  1:3286218/1‑93 (MQ=255)

          cACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGa                                                                             >  1:3907396/1‑93 (MQ=255)

           ccGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGAc                                                                            <  1:565245/92‑1 (MQ=255)

           aCGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGAc                                                                            >  2:3850860/1‑93 (MQ=255)

           aCGCATTTTCACGGCATCGGTAAGGA‑TTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGAcc                                                                           <  1:427838/93‑1 (MQ=255)

            cGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGAcc                                                                           >  1:58633/1‑93 (MQ=255)

            cGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGAcc                                                                           >  1:718419/1‑93 (MQ=255)

             gCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGAccc                                                                          <  2:3584864/93‑1 (MQ=255)

               aTTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGa                                                                        <  1:3843542/93‑1 (MQ=255)

                ttttCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGAt                                                                       >  2:2896315/1‑93 (MQ=255)

                ttttCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGAt                                                                       <  2:2736296/93‑1 (MQ=255)

                ttttCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGGGCAGATTGATAGACCCGAt                                                                       >  1:1906290/1‑93 (MQ=255)

                 tttCACGGCATCGGTCAGGACTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGAtt                                                                      <  1:3126341/93‑1 (MQ=255)

                  ttCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATta                                                                     <  1:198579/93‑1 (MQ=255)

                   tCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGGGCAGATTGATAGACTCGATtat                                                                    >  1:4037756/1‑93 (MQ=255)

                     aCGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATAc                                                                  <  1:3469794/93‑1 (MQ=255)

                     aCGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATAc                                                                  >  1:2222023/1‑93 (MQ=255)

                     aCGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATAc                                                                  <  1:3027857/93‑1 (MQ=255)

                       ggCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTc                                                                <  1:443607/93‑1 (MQ=255)

                          aTCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGt                                                             <  1:3872001/93‑1 (MQ=255)

                          aTCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGt                                                             <  1:814771/93‑1 (MQ=255)

                            cGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATCCTCGGTCa                                                           <  2:3738849/93‑1 (MQ=255)

                              gTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGa                                                         >  1:768976/1‑93 (MQ=255)

                              gTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGa                                                         >  2:4377155/1‑93 (MQ=255)

                                cAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACt                                                       <  1:2946002/93‑1 (MQ=255)

                                 aGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACtt                                                      >  1:3993828/1‑93 (MQ=255)

                                    aGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTc                                                   >  1:3245732/1‑93 (MQ=255)

                                    aGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTc                                                   <  2:2079767/93‑1 (MQ=255)

                                    aGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTc                                                   <  1:230161/93‑1 (MQ=255)

                                     gTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCg                                                  <  2:3112762/93‑1 (MQ=255)

                                      tttttGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGc                                                 >  2:1209811/1‑93 (MQ=255)

                                        tttGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCa                                               <  1:1418568/93‑1 (MQ=255)

                                         ttGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAg                                              <  1:2489857/93‑1 (MQ=255)

                                           gTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGtt                                            >  2:3566190/1‑93 (MQ=255)

                                           gTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGtt                                            <  1:3610850/93‑1 (MQ=255)

                                             aGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGa                                          <  2:383814/93‑1 (MQ=255)

                                             aGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGa                                          >  2:4420803/1‑93 (MQ=255)

                                              gATGTCTTTCCAGACGTGGGCGTGCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGaa                                         <  2:3870141/93‑1 (MQ=255)

                                              gATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGaa                                         <  2:379719/93‑1 (MQ=255)

                                               aTGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAAt                                        >  1:3606031/1‑93 (MQ=255)

                                                tgtcTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATg                                       <  1:3480449/90‑1 (MQ=255)

                                                tGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATg                                       >  1:3392507/1‑93 (MQ=255)

                                                tGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATg                                       >  1:49546/1‑93 (MQ=255)

                                                tGGCTTGCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGCTGAATg                                       <  1:1019685/93‑1 (MQ=255)

                                                 ggCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATgc                                      <  1:2030048/93‑1 (MQ=255)

                                                   cTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATgcgc                                    >  1:4458214/1‑93 (MQ=255)

                                                    ttttCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTTATAGTCCCGATTATACTCGGTCAGAGTTTTCGCCAGTTGAATGCGcc                                   <  2:155646/93‑1 (MQ=255)

                                                        cAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTg                               <  1:1130917/93‑1 (MQ=255)

                                                        cAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTg                               >  2:3416351/1‑93 (MQ=255)

                                                         aGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTgg                              <  2:2006237/93‑1 (MQ=255)

                                                          gACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGa                             <  2:1049116/93‑1 (MQ=255)

                                                           aCGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGAt                            <  1:1658286/93‑1 (MQ=255)

                                                            cGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATg                           <  2:12150/93‑1 (MQ=255)

                                                            cGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATg                           <  2:2781839/93‑1 (MQ=255)

                                                              tGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGaa                         >  2:1821028/1‑93 (MQ=255)

                                                              tGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGaa                         >  2:3201891/1‑93 (MQ=255)

                                                                ggCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACg                       >  1:1882390/1‑93 (MQ=255)

                                                                 gCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGc                      >  1:2618096/1‑93 (MQ=255)

                                                                  ggTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGcc                     <  1:1466989/92‑1 (MQ=255)

                                                                  cGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGcc                     <  2:4610508/93‑1 (MQ=255)

                                                                  cGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGcc                     <  2:3082361/93‑1 (MQ=255)

                                                                    ttCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCg                   >  1:151146/1‑93 (MQ=255)

                                                                     tCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGt                  <  1:1184590/93‑1 (MQ=255)

                                                                        aGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTtgt               >  1:1008261/1‑93 (MQ=255)

                                                                        aGTAAGTTCAGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTtgt               <  1:2639291/93‑1 (MQ=255)

                                                                         gTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTtgtg              <  1:3900298/93‑1 (MQ=255)

                                                                           aaGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGc            >  1:3546970/1‑93 (MQ=255)

                                                                           aaGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGc            >  2:4297757/1‑93 (MQ=255)

                                                                            aGTGCGGAGAGAGTGCAAATTGATTGCCCCGATTATGCTTGGTCAGACTTTCCTCCAGTTAACTGCGCCAGTGGATGACCGCCCGTTGGGGcc           <  2:2827796/93‑1 (MQ=255)

                                                                             gTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGTCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCa          <  1:1312439/93‑1 (MQ=255)

                                                                             gTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCa          >  2:2761794/1‑93 (MQ=255)

                                                                             gTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCa          >  1:1768799/1‑93 (MQ=255)

                                                                             gTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCa          <  2:393953/93‑1 (MQ=255)

                                                                                cGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGAt       <  2:2540003/93‑1 (MQ=255)

                                                                                cGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGAt       <  2:4283199/93‑1 (MQ=255)

                                                                                cGGTGAGAGTGCAGATTGATAAACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGAt       <  2:222078/93‑1 (MQ=255)

                                                                                 ggTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATa      <  2:4138022/93‑1 (MQ=255)

                                                                                 ggTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATa      >  2:2237772/1‑93 (MQ=255)

                                                                                  gTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATAc     >  2:3206144/1‑93 (MQ=255)

                                                                                     agagTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCgg  <  2:2364671/93‑1 (MQ=255)

                                                                                     agagTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCgg  <  1:1499589/93‑1 (MQ=255)

                                                                                     agagTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCgg  <  2:3050332/93‑1 (MQ=255)

GCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAATGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCGG  >  NC_000913/2077961‑2078138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGGCGCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAATGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCGGTAAA  >  NC_000913/2077956‑2078142

CGGGCGCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAG                                                                                               <  SRR4302535.1924246/94‑1 (MQ=60)

 GGGCGCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGT                                                                                              <  SRR4302535.369689/94‑1 (MQ=60)

  GGCGCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTG                                                                                             <  SRR4302535.2328420/94‑1 (MQ=60)

  GGCGCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTG                                                                                             <  SRR4302535.1453563/94‑1 (MQ=60)

     GCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAG                                                                                          >  SRR4302535.2489737/1‑94 (MQ=60)

       AATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGAT                                                                                        <  SRR4302535.1654236/94‑1 (MQ=60)

       AATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGAT                                                                                        >  SRR4302535.3174281/1‑94 (MQ=60)

       AATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGGAAGTTCGGTGAGAGTGCAGAT                                                                                        >  SRR4302535.3300243/1‑94 (MQ=60)

         TCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTG                                                                                      <  SRR4302535.4456134/94‑1 (MQ=60)

          CAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGA                                                                                     <  SRR4302535.4119282/94‑1 (MQ=60)

           AGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGAT                                                                                    >  SRR4302535.3930420/1‑94 (MQ=60)

             TCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAG                                                                                  >  SRR4302535.1327698/1‑94 (MQ=60)

             TCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAG                                                                                  <  SRR4302535.2051504/94‑1 (MQ=60)

             TCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAG                                                                                  <  SRR4302535.1235067/94‑1 (MQ=60)

              CCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGA                                                                                 >  SRR4302535.3309060/1‑94 (MQ=60)

              CCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGA                                                                                 >  SRR4302535.3934165/1‑94 (MQ=60)

              CCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGA                                                                                 <  SRR4302535.397609/94‑1 (MQ=60)

                CCGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACC                                                                               <  SRR4302535.569203/94‑1 (MQ=60)

                ACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACC                                                                               >  SRR4302535.723467/1‑94 (MQ=60)

                ACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACC                                                                               >  SRR4302535.59063/1‑94 (MQ=60)

                ACGCATTTTCACGGCATCGGTAAGGA‑TTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCC                                                                              <  SRR4302535.430814/94‑1 (MQ=60)

                  GCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCG                                                                             <  SRR4302535.3767615/94‑1 (MQ=60)

                    ATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGAT                                                                           <  SRR4302535.3870017/94‑1 (MQ=60)

                    ATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGGGCAGATTGATAGACCCGAT                                                                           >  SRR4302535.1920009/1‑94 (MQ=60)

                      TTTCACGGCATCGGTCAGGACTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTA                                                                         <  SRR4302535.3148115/94‑1 (MQ=60)

                       TTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTAT                                                                        <  SRR4302535.199942/94‑1 (MQ=60)

                       TTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTAT                                                                        <  SRR4302535.4641727/94‑1 (MQ=60)

                       TTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGGGCAGATTGATAGACTCGATTAT                                                                        >  SRR4302535.4065394/1‑94 (MQ=60)

                         CACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATAC                                                                      >  SRR4302535.2237840/1‑94 (MQ=60)

                          ACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACT                                                                     <  SRR4302535.3049052/94‑1 (MQ=60)

                          ACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACT                                                                     <  SRR4302535.3493907/94‑1 (MQ=60)

                            GGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCG                                                                   <  SRR4302535.446712/94‑1 (MQ=60)

                               ATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTC                                                                <  SRR4302535.820483/94‑1 (MQ=60)

                               ATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTC                                                                >  SRR4302535.3522478/1‑94 (MQ=60)

                               ATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTC                                                                <  SRR4302535.3898610/94‑1 (MQ=60)

                                  GGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGA                                                             >  SRR4302535.774387/1‑94 (MQ=60)

                                     CAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTT                                                          <  SRR4302535.2966705/94‑1 (MQ=60)

                                     CAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTT                                                          >  SRR4302535.4021149/1‑94 (MQ=60)

                                        GAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTC                                                       >  SRR4302535.3268270/1‑94 (MQ=60)

                                         AGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCG                                                      <  SRR4302535.231749/94‑1 (MQ=60)

                                           TTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCC                                                    <  SRR4302535.4052789/94‑1 (MQ=60)

                                             TTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAG                                                  <  SRR4302535.1428696/94‑1 (MQ=60)

                                              TTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGT                                                 <  SRR4302535.2507815/94‑1 (MQ=60)

                                                GTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTG                                               <  SRR4302535.3635891/94‑1 (MQ=60)

                                                   GATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAAT                                            >  SRR4302535.3631046/1‑94 (MQ=60)

                                                    ATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATG                                           >  SRR4302535.49916/1‑94 (MQ=60)

                                                    ATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATG                                           >  SRR4302535.3416111/1‑94 (MQ=60)

                                                     TGTCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGC                                          <  SRR4302535.3504627/94‑1 (MQ=60)

                                                     TGGCTTGCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGCTGAATGC                                          <  SRR4302535.1026928/94‑1 (MQ=60)

                                                      GGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCG                                         >  SRR4302535.1554298/1‑94 (MQ=60)

                                                      GGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCG                                         <  SRR4302535.2044679/94‑1 (MQ=60)

                                                       TCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGC                                        >  SRR4302535.4488789/1‑94 (MQ=60)

                                                            CCAGACGTGGGCGGTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTG                                   >  SRR4302535.4354091/1‑94 (MQ=60)

                                                             CAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGG                                  <  SRR4302535.1138989/94‑1 (MQ=60)

                                                               GACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGAT                                <  SRR4302535.654927/94‑1 (MQ=60)

                                                                ACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATG                               <  SRR4302535.822850/94‑1 (MQ=60)

                                                                ACGTGGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATG                               <  SRR4302535.1670274/94‑1 (MQ=60)

                                                                    GGGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACG                           >  SRR4302535.1895957/1‑94 (MQ=60)

                                                                     GGCGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGC                          >  SRR4302535.2636865/1‑94 (MQ=60)

                                                                       GGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCC                        <  SRR4302535.335553/94‑1 (MQ=60)

                                                                       GGTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCC                        <  SRR4302535.1477497/94‑1 (MQ=60)

                                                                        GTTCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCG                       >  SRR4302535.152205/1‑94 (MQ=60)

                                                                          TCGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTT                     <  SRR4302535.1193052/94‑1 (MQ=60)

                                                                           CGAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTG                    >  SRR4302535.271226/1‑94 (MQ=60)

                                                                            GAGTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGT                   >  SRR4302535.1015425/1‑94 (MQ=60)

                                                                             AGTAAGTTCAGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTG                  <  SRR4302535.2658197/94‑1 (MQ=60)

                                                                              GTAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGG                 <  SRR4302535.3927013/94‑1 (MQ=60)

                                                                               TAAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGC                >  SRR4302535.3571596/1‑94 (MQ=60)

                                                                                AAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCC               <  SRR4302535.2176579/94‑1 (MQ=60)

                                                                                AAGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCC               <  SRR4302535.145076/94‑1 (MQ=60)

                                                                                 AGTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCA              >  SRR4302535.1781624/1‑94 (MQ=60)

                                                                                  GTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGTCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAG             <  SRR4302535.1321822/94‑1 (MQ=60)

                                                                                  GTTCGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAG             <  SRR4302535.1867969/94‑1 (MQ=60)

                                                                                     CGGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATA          <  SRR4302535.203043/94‑1 (MQ=60)

                                                                                      GGTGAGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAAGGCGCCAGGGGATGAACGCCCGTTGTGGCCAGATAC         >  SRR4302535.2489899/1‑94 (MQ=60)

                                                                                          AGAGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCGGT     <  SRR4302535.1510377/94‑1 (MQ=60)

                                                                                            AGTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCGGTAA   >  SRR4302535.4436122/1‑94 (MQ=60)

                                                                                             GTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATTCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCGGTAAA  >  SRR4302535.857527/1‑94 (MQ=60)

                                                                                             GTGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCGGTAAA  >  SRR4302535.2184970/1‑94 (MQ=60)

CGGGCGCAATCAGTCCACGCATTTTCACGGCATCGGTCAGGAGTTTTTGTAGATGGCTTTCCAGACGTGGGCGTTCGAGTAAGTTCGGTGAGAATGCAGATTGATAGACCCGATTATACTCGGTCAGACTTTTCGCCAGTTGAATGCGCCAGTGGATGAACGCCCGTTGTGGCCAGATACCGGTAAA  >  NC_000913/2077956‑2078142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`