Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,078,857 |
T→C |
Y143C (TAC→TGC) |
sbmC ← |
SbmC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,078,857 | 0 | T | C | 98.5%
| 399.4
/ ‑4.6
| 133 | Y143C (TAC→TGC) | sbmC | SbmC |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (61/70); total (63/70) |
| Fisher's exact test for biased strand distribution p-value = 2.22e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 135 total aligned reads displayed.
AAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAG > NC_000913/2078769‑2078946
|
aaaaaGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTAccc > 1:3856872/1‑93 (MQ=255)
aaaaaGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACAGTTCGATATCCCAGCAccc > 1:1963511/1‑93 (MQ=255)
aaaaGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCa > 1:463109/1‑93 (MQ=255)
aaaGAGCGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCAt > 2:1437724/1‑93 (MQ=255)
aaGAGTGGTGATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATAGCCCAGCACCCATc < 2:1871405/93‑1 (MQ=255)
aaGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATc > 1:2471405/1‑93 (MQ=255)
agagTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCt < 2:2793348/93‑1 (MQ=255)
agagTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCt < 1:618669/93‑1 (MQ=255)
agTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTc < 1:138392/93‑1 (MQ=255)
gTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTcc > 1:1560745/1‑93 (MQ=255)
tGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCcg > 1:2668286/1‑93 (MQ=255)
tGGTCATCGCGTTAACACACCGCCCTGAGACGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCcg > 1:2649117/1‑93 (MQ=255)
gTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCcgcg > 1:3537924/1‑93 (MQ=255)
gTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCcgcg > 2:1669112/1‑93 (MQ=255)
tCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCgcgc > 1:4664069/1‑93 (MQ=255)
cATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGcc > 2:291670/1‑93 (MQ=255)
aTCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCa > 1:811112/1‑93 (MQ=255)
cgcgTTAACACGCCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCAtt < 1:2824143/93‑1 (MQ=255)
cgcgTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCAtt < 1:897279/93‑1 (MQ=255)
gcgTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTg > 1:942452/1‑93 (MQ=255)
acacCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCGACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATa > 1:2510549/1‑93 (MQ=255)
acCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATaaa > 1:2391853/1‑93 (MQ=255)
ccGCCCTGAGATGAATTATTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAc > 2:691146/1‑93 (MQ=255)
ccGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAc > 1:689477/1‑93 (MQ=255)
cGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAcc < 2:3750717/93‑1 (MQ=255)
cGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAcc < 2:119367/93‑1 (MQ=255)
cGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAcc > 1:103384/1‑93 (MQ=255)
gCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCt < 1:3208103/93‑1 (MQ=255)
cccTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCCCCCATCTTCCGCGCCATTGTTCAAATAAACCTc < 2:506163/93‑1 (MQ=255)
cccTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTc > 1:4116240/1‑93 (MQ=255)
cccTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTc < 2:2098481/93‑1 (MQ=255)
ccTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCg > 2:4048226/1‑93 (MQ=255)
ccTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCg > 2:267386/1‑93 (MQ=255)
cTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGa > 2:246890/1‑93 (MQ=255)
cTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGa < 1:3349952/93‑1 (MQ=255)
cTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGa < 1:4185472/93‑1 (MQ=255)
cTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGa > 1:2678873/1‑93 (MQ=255)
tGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGaa > 2:718212/1‑93 (MQ=255)
tGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGaa < 2:1998884/93‑1 (MQ=255)
agaTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGc > 1:4406223/1‑93 (MQ=255)
aTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAg < 1:913774/93‑1 (MQ=255)
aTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAg < 2:912332/93‑1 (MQ=255)
aTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAg < 1:2259111/93‑1 (MQ=255)
aTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAg < 1:188030/93‑1 (MQ=255)
aTGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAg < 1:2505544/93‑1 (MQ=255)
tGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAgg > 1:1832402/1‑93 (MQ=255)
tGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAgg < 2:3370016/93‑1 (MQ=255)
tGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAgg > 2:3251705/1‑93 (MQ=255)
aaTTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGc > 2:3751104/1‑93 (MQ=255)
aaTTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGc > 2:1585710/1‑93 (MQ=255)
aTTAGTGATGTTTTGGCTTCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCt < 2:1201829/93‑1 (MQ=255)
tAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCttt < 1:2495331/93‑1 (MQ=255)
aGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTg < 1:2169510/93‑1 (MQ=255)
aGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTg < 2:4538569/93‑1 (MQ=255)
gTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTgg > 2:1526017/1‑93 (MQ=255)
tGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGt < 2:2223685/93‑1 (MQ=255)
gATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTa > 2:153816/1‑93 (MQ=255)
aTGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTaa < 1:4246131/93‑1 (MQ=255)
aTGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTaa > 1:1527184/1‑93 (MQ=255)
aTGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTaa < 1:1476064/93‑1 (MQ=255)
tGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAAc > 1:246453/1‑93 (MQ=255)
tGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAAc > 2:3108288/1‑93 (MQ=255)
tttGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACAtt < 1:3884658/93‑1 (MQ=255)
ttGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACAttt > 2:279188/1‑93 (MQ=255)
ttGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACAttt < 1:3437645/93‑1 (MQ=255)
tGGCTGCACCGCAACATACATTGCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTc < 2:1384395/93‑1 (MQ=255)
ggCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAACCCTCGAAGCAGGGCTTTGGTAACATTTCa < 2:967906/93‑1 (MQ=255)
ggCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCa > 1:4517505/1‑93 (MQ=255)
ggCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCa > 2:34538/1‑93 (MQ=255)
gCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCAt < 2:3528674/93‑1 (MQ=255)
tGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATaa < 2:4673559/93‑1 (MQ=255)
cccGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCa < 2:898078/92‑1 (MQ=255)
ccGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCAc < 2:1728299/93‑1 (MQ=255)
cGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACt < 2:2575660/93‑1 (MQ=255)
cAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGt < 2:613449/93‑1 (MQ=255)
aaCATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTc > 2:824939/1‑93 (MQ=255)
aaCATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTc < 2:3143750/93‑1 (MQ=255)
aaCATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTc < 2:989227/93‑1 (MQ=255)
aaCATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTc > 1:1034912/1‑93 (MQ=255)
aaCATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTc > 1:371705/1‑93 (MQ=255)
acatacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTcc < 1:115820/93‑1 (MQ=255)
acatacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTcc < 1:2724045/93‑1 (MQ=255)
acatacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTcc > 1:3735132/1‑93 (MQ=255)
atacatTTCGATATCCCAGCACCCATCTTCAGCGCCATTGATCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTg > 2:1525463/1‑93 (MQ=255)
tacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGc > 1:3748772/1‑93 (MQ=255)
tacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGc > 1:2822256/1‑93 (MQ=255)
tacatTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGc > 2:2293936/1‑93 (MQ=255)
catTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCaa < 1:4622211/93‑1 (MQ=255)
catTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCaa < 1:3863354/93‑1 (MQ=255)
catTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCaa < 1:4650299/93‑1 (MQ=255)
cGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGAc < 1:2022025/93‑1 (MQ=255)
gATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACt > 2:193066/1‑93 (MQ=255)
atatCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTa > 1:3124038/1‑93 (MQ=255)
tatCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTAt < 1:4580812/93‑1 (MQ=255)
tatCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTAt < 2:2509155/93‑1 (MQ=255)
atCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTAtt < 2:1188806/93‑1 (MQ=255)
cccAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTaa < 2:2893184/93‑1 (MQ=255)
ccAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTaaa < 1:3080168/93‑1 (MQ=255)
ccAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTaaa < 1:2229750/93‑1 (MQ=255)
cAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAg < 1:477929/93‑1 (MQ=255)
|
AAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAG > NC_000913/2078769‑2078946
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCAAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAA > NC_000913/2078764‑2078948
|
TCAAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGC < SRR4302535.2462719/94‑1 (MQ=60)
TCAAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGC < SRR4302535.2634789/94‑1 (MQ=60)
CAAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCA > SRR4302535.1669125/1‑94 (MQ=60)
AAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCC > SRR4302535.3883425/1‑94 (MQ=60)
AAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACAGTTCGATATCCCAGCACCC > SRR4302535.1977669/1‑94 (MQ=60)
AAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCA > SRR4302535.466347/1‑94 (MQ=60)
AAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATC > SRR4302535.2489220/1‑94 (MQ=60)
AAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCT > SRR4302535.2477155/1‑94 (MQ=60)
AGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTT < SRR4302535.622969/94‑1 (MQ=60)
GAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTC > SRR4302535.4665794/1‑94 (MQ=60)
AGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCC < SRR4302535.139360/94‑1 (MQ=60)
AGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCC > SRR4302535.1571991/1‑94 (MQ=60)
AGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCC < SRR4302535.1960995/94‑1 (MQ=60)
GTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCG > SRR4302535.2687386/1‑94 (MQ=60)
GTGGTCATCGCGTTAACACACCGCCCTGAGACGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCG > SRR4302535.2668089/1‑94 (MQ=60)
GGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCG > SRR4302535.3562485/1‑94 (MQ=60)
GTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGC > SRR4302535.4695604/1‑94 (MQ=60)
CATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCA > SRR4302535.816783/1‑94 (MQ=60)
CGCGTTAACACGCCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTG < SRR4302535.2844189/94‑1 (MQ=60)
CGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTG < SRR4302535.903638/94‑1 (MQ=60)
CGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTG > SRR4302535.949124/1‑94 (MQ=60)
GCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGT > SRR4302535.3565728/1‑94 (MQ=60)
GCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGT < SRR4302535.258085/94‑1 (MQ=60)
ACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAAT < SRR4302535.3318797/94‑1 (MQ=60)
CACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCGACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATA > SRR4302535.2528648/1‑94 (MQ=60)
CACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAA > SRR4302535.2409050/1‑94 (MQ=60)
ACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAAC > SRR4302535.694308/1‑94 (MQ=60)
CCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACC > SRR4302535.104115/1‑94 (MQ=60)
GCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTC < SRR4302535.3230323/94‑1 (MQ=60)
GCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTC < SRR4302535.2191845/94‑1 (MQ=60)
GCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTC > SRR4302535.4144414/1‑94 (MQ=60)
CCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGA > SRR4302535.2698039/1‑94 (MQ=60)
CTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAA < SRR4302535.3373286/94‑1 (MQ=60)
CTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAA < SRR4302535.4214104/94‑1 (MQ=60)
GAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGC > SRR4302535.4436379/1‑94 (MQ=60)
ATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGG < SRR4302535.2275195/94‑1 (MQ=60)
ATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGG < SRR4302535.4229912/94‑1 (MQ=60)
ATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGG < SRR4302535.920266/94‑1 (MQ=60)
ATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGG < SRR4302535.189331/94‑1 (MQ=60)
ATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGG > SRR4302535.1845625/1‑94 (MQ=60)
ATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGG < SRR4302535.2523606/94‑1 (MQ=60)
TAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTG < SRR4302535.2513335/94‑1 (MQ=60)
AGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGG < SRR4302535.2185049/94‑1 (MQ=60)
TGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTA > SRR4302535.98586/1‑94 (MQ=60)
GATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAA > SRR4302535.1538187/1‑94 (MQ=60)
GATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAA > SRR4302535.1560321/1‑94 (MQ=60)
ATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAAC < SRR4302535.1486630/94‑1 (MQ=60)
ATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAAC < SRR4302535.1216976/94‑1 (MQ=60)
ATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAAC < SRR4302535.4275199/94‑1 (MQ=60)
ATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAAC > SRR4302535.248143/1‑94 (MQ=60)
TGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACA > SRR4302535.303065/1‑94 (MQ=60)
TGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACA > SRR4302535.4033648/1‑94 (MQ=60)
TTTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTT < SRR4302535.3911308/94‑1 (MQ=60)
TTGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTC < SRR4302535.3461557/94‑1 (MQ=60)
TGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCA > SRR4302535.4548468/1‑94 (MQ=60)
TGGCTGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCA > SRR4302535.2513696/1‑94 (MQ=60)
TGCACCGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAG > SRR4302535.839221/1‑94 (MQ=60)
CGCAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTG > SRR4302535.4592338/1‑94 (MQ=60)
CAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTC > SRR4302535.1042263/1‑94 (MQ=60)
CAACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTC > SRR4302535.374278/1‑94 (MQ=60)
AACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCC > SRR4302535.3760983/1‑94 (MQ=60)
ACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCT < SRR4302535.116633/94‑1 (MQ=60)
ACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCT < SRR4302535.2702336/94‑1 (MQ=60)
ACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCT < SRR4302535.2743500/94‑1 (MQ=60)
ACATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCT < SRR4302535.541580/94‑1 (MQ=60)
CATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTTGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTG > SRR4302535.3840979/1‑94 (MQ=60)
ATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGC > SRR4302535.3774711/1‑94 (MQ=60)
ATACATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGC > SRR4302535.2842294/1‑94 (MQ=60)
CATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAG < SRR4302535.3889933/94‑1 (MQ=60)
CATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAG < SRR4302535.4681791/94‑1 (MQ=60)
CATTTCGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAG < SRR4302535.4653609/94‑1 (MQ=60)
CGATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACT < SRR4302535.2036599/94‑1 (MQ=60)
GATATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTA > SRR4302535.3145796/1‑94 (MQ=60)
TATCCCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATT < SRR4302535.4612009/94‑1 (MQ=60)
CCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAG < SRR4302535.3101643/94‑1 (MQ=60)
CCAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAG < SRR4302535.2245606/94‑1 (MQ=60)
CAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGA < SRR4302535.481280/94‑1 (MQ=60)
CAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGA > SRR4302535.574150/1‑94 (MQ=60)
CAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGA > SRR4302535.2923886/1‑94 (MQ=60)
CAGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGA > SRR4302535.4623258/1‑94 (MQ=60)
AGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAA > SRR4302535.2641540/1‑94 (MQ=60)
AGCACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAA > SRR4302535.4021467/1‑94 (MQ=60)
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TCAAAAAAAAGAGTGGTCATCGCGTTAACACACCGCCCTGAGATGAATTAGTGATGTTTTGGCTGCACCGCAACATACATTTCGATATCCCAGTACCCATCTTCCGCGCCATTGTTCAAATAAACCTCGAAGCAGGGCTTTGGTAACATTTCATAAGCACTGTCCTGCAAGAGACTATTAAAGAA > NC_000913/2078764‑2078948
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
