Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,106,960 |
T→C |
D216G (GAC→GGC) |
rfbX ← |
putative O‑antigen transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,106,960 | 0 | T | C | 98.5%
| 407.8
/ ‑2.5
| 133 | D216G (GAC→GGC) | rfbX | putative O‑antigen transporter |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (80/51); total (81/52) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.61e-01 |
Only 100 of 135 total aligned reads displayed.
GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC > NC_000913/2106870‑2107048
|
cGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGc < 2:332441/93‑1 (MQ=255)
gTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCt > 2:4068246/1‑93 (MQ=255)
gTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCt > 1:4026254/1‑93 (MQ=255)
ttGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTa < 2:2249749/93‑1 (MQ=255)
ttGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTa > 1:1786588/1‑93 (MQ=255)
tGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTaa < 2:4387400/93‑1 (MQ=255)
ggTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATGTAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTaaa < 2:4619787/93‑1 (MQ=255)
ggTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTaaa < 1:3089221/93‑1 (MQ=255)
ggTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACACGAAAACCGCCTGCTaaa < 1:2543315/93‑1 (MQ=255)
gTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAg > 1:4072032/1‑93 (MQ=255)
tCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGa < 2:597136/93‑1 (MQ=255)
ccAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAt < 2:3231185/93‑1 (MQ=255)
cAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATc < 2:1495920/93‑1 (MQ=255)
aGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCg > 1:2707941/1‑93 (MQ=255)
gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa > 1:2921758/1‑93 (MQ=255)
gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa > 1:3095685/1‑93 (MQ=255)
gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGGGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa < 1:2468241/93‑1 (MQ=255)
tataAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACg > 2:2970725/1‑93 (MQ=255)
ataAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGc > 1:962598/1‑93 (MQ=255)
taAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcg > 1:898730/1‑92 (MQ=255)
taAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcg > 2:4027523/1‑92 (MQ=255)
aaaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcgc > 1:4000095/1‑91 (MQ=255)
aaaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcgc < 1:434801/93‑3 (MQ=255)
aaTCCCAGGATAATACCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcgca < 1:2033720/93‑1 (MQ=255)
ccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAt > 2:1751500/1‑93 (MQ=255)
cAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATg > 2:3275547/1‑93 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTa < 2:1568440/93‑1 (MQ=255)
ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTa > 1:4471384/1‑93 (MQ=255)
ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAAt > 1:1958819/1‑93 (MQ=255)
taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATg > 2:130509/1‑93 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGa < 2:4348244/93‑1 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGa > 2:2001059/1‑93 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGa < 1:710490/93‑1 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGa > 1:4500021/1‑93 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGa < 1:2870861/93‑1 (MQ=255)
aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGa < 2:1565436/93‑1 (MQ=255)
ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAt > 1:2635852/1‑93 (MQ=255)
taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAATATCGACGCGCATTATGTAATGATa > 2:4539698/1‑93 (MQ=255)
taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATa < 1:185119/93‑1 (MQ=255)
taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATa > 2:3552136/1‑93 (MQ=255)
aaCTATTCCCGTGGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAg > 1:528614/1‑93 (MQ=255)
cTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCg > 2:2680368/1‑93 (MQ=255)
cTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCg > 1:1655777/1‑93 (MQ=255)
cTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCg > 2:2808981/1‑93 (MQ=255)
aTTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTa > 2:2624619/1‑93 (MQ=255)
cccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACt > 1:3906053/1‑93 (MQ=255)
cccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACt < 2:2317930/93‑1 (MQ=255)
ccGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACtt > 1:588377/1‑93 (MQ=255)
tAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTAc > 2:3671648/1‑93 (MQ=255)
aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCaa > 2:2826448/1‑93 (MQ=255)
aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCaa > 2:854349/1‑93 (MQ=255)
atatAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAAt < 1:3480153/93‑1 (MQ=255)
tataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATc > 1:2038745/1‑93 (MQ=255)
ataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATcc < 2:2637341/93‑1 (MQ=255)
ataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATcc > 2:2320193/1‑93 (MQ=255)
taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCa > 1:1901619/1‑93 (MQ=255)
taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCa < 1:1644025/93‑1 (MQ=255)
aaCTAATAGCAGATGTGGCAATAAAAACATGAAAACCGCCTGCTCAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAc > 2:707954/1‑93 (MQ=255)
cTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCt < 2:4310940/93‑1 (MQ=255)
cTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCt < 1:1843078/93‑1 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 1:4309260/1‑93 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 2:1209759/1‑93 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 1:2251113/1‑93 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 2:634151/1‑93 (MQ=255)
tAATAGCAGATGTGGAAATAAAAACATGAAAACCACCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt > 2:4042853/1‑93 (MQ=255)
aTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCa < 1:2988887/93‑1 (MQ=255)
aTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCa > 2:2478997/1‑93 (MQ=255)
aGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATg > 2:3599834/1‑93 (MQ=255)
gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa > 1:3444889/1‑93 (MQ=255)
cAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaa < 2:3212479/93‑1 (MQ=255)
aGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac > 2:4591200/1‑93 (MQ=255)
aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac < 2:954730/93‑1 (MQ=255)
aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac > 2:1998150/1‑93 (MQ=255)
aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac > 2:1580096/1‑93 (MQ=255)
gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca > 1:1315150/1‑93 (MQ=255)
gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca > 1:2660029/1‑93 (MQ=255)
gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca > 1:4304209/1‑93 (MQ=255)
aTGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaa < 1:4551270/93‑1 (MQ=255)
aTGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaa < 1:835393/93‑1 (MQ=255)
tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAATCTTCATGaacaac > 2:3028899/1‑93 (MQ=255)
ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt < 2:1829571/93‑1 (MQ=255)
ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt < 1:2330033/93‑1 (MQ=255)
ggAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAt < 1:2647455/93‑1 (MQ=255)
gAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATa < 1:2477070/93‑1 (MQ=255)
aaTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGc > 2:3672294/1‑93 (MQ=255)
aaTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGc > 1:308977/1‑93 (MQ=255)
aaaaaaCATGAAACCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa < 2:289811/92‑1 (MQ=255)
aaaaaCATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg < 1:3223861/93‑1 (MQ=255)
aaaaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg > 1:2350715/1‑93 (MQ=255)
aaaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGt > 2:3631466/1‑93 (MQ=255)
aaaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGt > 1:2751081/1‑93 (MQ=255)
aCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCa > 1:4290687/1‑93 (MQ=255)
cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa > 1:1418110/1‑93 (MQ=255)
aTGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaat > 1:1268232/1‑93 (MQ=255)
tGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaata > 2:2435888/1‑93 (MQ=255)
aaaaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataat < 2:120582/93‑1 (MQ=255)
aaaaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataat < 2:3378531/93‑1 (MQ=255)
aaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc < 2:3072561/93‑1 (MQ=255)
aaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc > 2:2416528/1‑93 (MQ=255)
aCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTcc > 2:3908749/1‑93 (MQ=255)
|
GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC > NC_000913/2106870‑2107048
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA > NC_000913/2106868‑2107053
|
CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC > SRR4302535.3777218/1‑94 (MQ=60)
GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTG < SRR4302535.2793872/94‑1 (MQ=60)
CGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCT > SRR4302535.4053802/1‑94 (MQ=60)
GTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTA > SRR4302535.1799514/1‑94 (MQ=60)
GGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAG > SRR4302535.4099898/1‑94 (MQ=60)
GGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAG < SRR4302535.3110736/94‑1 (MQ=60)
GGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACACGAAAACCGCCTGCTAAAG < SRR4302535.2561628/94‑1 (MQ=60)
CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC > SRR4302535.3057427/1‑94 (MQ=60)
CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG < SRR4302535.4337579/94‑1 (MQ=60)
CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG > SRR4302535.2727291/1‑94 (MQ=60)
AGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGA > SRR4302535.3117244/1‑94 (MQ=60)
AGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGA > SRR4302535.2942368/1‑94 (MQ=60)
GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGGGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC < SRR4302535.2486036/94‑1 (MQ=60)
TATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGC > SRR4302535.969436/1‑94 (MQ=60)
ATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCG > SRR4302535.905099/1‑94 (MQ=60)
TAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGC > SRR4302535.4027461/1‑94 (MQ=60)
AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCA < SRR4302535.437831/94‑1 (MQ=60)
AATCCCAGGATAATACCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCAT < SRR4302535.2048373/94‑1 (MQ=60)
CAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGT < SRR4302535.747315/94‑1 (MQ=60)
AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTA > SRR4302535.4502067/1‑94 (MQ=60)
GATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAAT > SRR4302535.1972919/1‑94 (MQ=60)
TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGA > SRR4302535.4530927/1‑94 (MQ=60)
AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT < SRR4302535.1826622/94‑1 (MQ=60)
AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT < SRR4302535.2891201/94‑1 (MQ=60)
AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT > SRR4302535.1928526/1‑94 (MQ=60)
AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT > SRR4302535.2654737/1‑94 (MQ=60)
AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT < SRR4302535.715476/94‑1 (MQ=60)
TAACTATTCCCGTGGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAG > SRR4302535.532308/1‑94 (MQ=60)
TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAG < SRR4302535.186395/94‑1 (MQ=60)
AACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGC > SRR4302535.2242320/1‑94 (MQ=60)
ACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCG > SRR4302535.1667754/1‑94 (MQ=60)
CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGT > SRR4302535.2398194/1‑94 (MQ=60)
TCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACT > SRR4302535.3932815/1‑94 (MQ=60)
CCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTT > SRR4302535.592503/1‑94 (MQ=60)
ATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATC > SRR4302535.2053425/1‑94 (MQ=60)
ATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATC < SRR4302535.3504330/94‑1 (MQ=60)
ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCA > SRR4302535.2607164/1‑94 (MQ=60)
ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCA > SRR4302535.1915307/1‑94 (MQ=60)
TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA < SRR4302535.1655909/94‑1 (MQ=60)
CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT < SRR4302535.1856368/94‑1 (MQ=60)
CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT > SRR4302535.2267145/1‑94 (MQ=60)
CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT > SRR4302535.4338741/1‑94 (MQ=60)
ATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAT < SRR4302535.3009842/94‑1 (MQ=60)
AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA > SRR4302535.3468843/1‑94 (MQ=60)
CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC < SRR4302535.1583793/94‑1 (MQ=60)
AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACA > SRR4302535.4333657/1‑94 (MQ=60)
AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACA > SRR4302535.1324546/1‑94 (MQ=60)
AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACA > SRR4302535.2679085/1‑94 (MQ=60)
AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGAAATGATAGCGTAACTTTACCCATCCAACCTTCATGAACA > SRR4302535.2679083/1‑94 (MQ=60)
ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC < SRR4302535.3177666/94‑1 (MQ=60)
ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC < SRR4302535.4582375/94‑1 (MQ=60)
ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC < SRR4302535.841252/94‑1 (MQ=60)
ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC > SRR4302535.3580800/1‑94 (MQ=60)
TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT > SRR4302535.409798/1‑94 (MQ=60)
GGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATA < SRR4302535.2346699/94‑1 (MQ=60)
GGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATA < SRR4302535.2666419/94‑1 (MQ=60)
GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG < SRR4302535.2494935/94‑1 (MQ=60)
AAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGC > SRR4302535.311120/1‑94 (MQ=60)
TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG > SRR4302535.2367569/1‑94 (MQ=60)
AAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT < SRR4302535.3246210/94‑1 (MQ=60)
AAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT > SRR4302535.2770692/1‑94 (MQ=60)
AACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA > SRR4302535.4320034/1‑94 (MQ=60)
ACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAA > SRR4302535.4443843/1‑94 (MQ=60)
ACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAA > SRR4302535.1428234/1‑94 (MQ=60)
CATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAAT > SRR4302535.1277303/1‑94 (MQ=60)
AACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC > SRR4302535.4587758/1‑94 (MQ=60)
GCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA < SRR4302535.4395903/94‑1 (MQ=60)
CCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA < SRR4302535.4648442/94‑1 (MQ=60)
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CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA > NC_000913/2106868‑2107053
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
