Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,106,960 T→C D216G (GAC→GGC)  rfbX ← putative O‑antigen transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,106,9600TC100.0% 811.7 / NA 256D216G (GAC→GGC) rfbXputative O‑antigen transporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (136/120);  total (136/120)

Only 100 of 257 total aligned reads displayed.

GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA  >  NC_000913/2106870‑2107049
                                                                                          |                                                                                         
gACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCt                                                                                         >  2:3549859/1‑93 (MQ=255)
 aCGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTg                                                                                        >  1:1834016/1‑93 (MQ=255)
  cGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGc                                                                                       <  2:6013049/93‑1 (MQ=255)
   gTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCt                                                                                      <  2:7472206/93‑1 (MQ=255)
       gTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAg                                                                                  <  2:2460097/93‑1 (MQ=255)
       gTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAg                                                                                  <  1:1048982/93‑1 (MQ=255)
        tCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGa                                                                                 <  1:2418144/93‑1 (MQ=255)
        tCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGa                                                                                 <  1:3998355/93‑1 (MQ=255)
        tCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGa                                                                                 <  2:1692808/93‑1 (MQ=255)
          cAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATc                                                                               <  1:5025832/93‑1 (MQ=255)
           aGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCg                                                                              >  1:1919679/1‑93 (MQ=255)
            gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa                                                                             <  2:5822926/93‑1 (MQ=255)
            gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa                                                                             >  2:7114071/1‑93 (MQ=255)
            gATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGa                                                                             >  1:31448/1‑93 (MQ=255)
              tataAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACg                                                                           >  1:4757564/1‑93 (MQ=255)
              tataAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACg                                                                           >  1:5392307/1‑93 (MQ=255)
               ataAAGCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGc                                                                          <  2:7230096/93‑1 (MQ=255)
                taAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcg                                                                         >  2:7084558/1‑92 (MQ=255)
                 aaaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcgc                                                                        <  1:6473226/93‑3 (MQ=255)
                 aaaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcgc                                                                        <  1:4357398/93‑3 (MQ=255)
                  aaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcgca                                                                       <  2:3725686/93‑1 (MQ=255)
                  aaTCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGcgca                                                                       >  1:550741/1‑93 (MQ=255)
                     cccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTa                                                                    >  2:7763604/1‑93 (MQ=255)
                      ccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAt                                                                   <  2:813838/93‑1 (MQ=255)
                      ccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAt                                                                   <  1:2152350/93‑1 (MQ=255)
                      ccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAt                                                                   >  1:6909269/1‑93 (MQ=255)
                       cAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATg                                                                  >  2:4513846/1‑93 (MQ=255)
                       cAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATg                                                                  <  2:1627426/93‑1 (MQ=255)
                       cAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATg                                                                  >  2:6517204/1‑93 (MQ=255)
                         ttataataACTATTCCCGTAGAATATAAACTCATAACAGATGCGGAAATAACCACATGACGCCCGCCTGCTAAAGATCGACGCCCCTTCTGtc                                                                >  2:5326408/3‑92 (MQ=255)
                         ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTa                                                                >  2:617440/1‑93 (MQ=255)
                         ggATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTa                                                                >  1:1501047/1‑93 (MQ=255)
                           ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAAt                                                              <  2:6857386/93‑1 (MQ=255)
                           ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAAt                                                              <  2:809081/93‑1 (MQ=255)
                            taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATg                                                             >  2:2572294/1‑93 (MQ=255)
                            taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATg                                                             >  2:1067551/1‑93 (MQ=255)
                            taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATg                                                             >  1:6774028/1‑93 (MQ=255)
                             aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGa                                                            >  1:7912491/1‑93 (MQ=255)
                              ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAt                                                           >  1:4658678/1‑93 (MQ=255)
                              ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAt                                                           >  1:4234928/1‑93 (MQ=255)
                               taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATa                                                          >  2:405855/1‑93 (MQ=255)
                                 aCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGc                                                        >  2:1297909/1‑93 (MQ=255)
                                   tATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCATGCTAAAGATCGACGCGCATTATGTAATGATAGCga                                                      >  2:2761808/1‑92 (MQ=255)
                                    aTTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTa                                                     >  2:7676581/1‑93 (MQ=255)
                                     ttCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTaa                                                    <  1:492956/93‑1 (MQ=255)
                                      tCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAATCCGCCTGCTCAAGATCGACGCGCATTATGTAATGATAGCGTaat                                                   >  2:6025575/1‑92 (MQ=255)
                                      tCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAAc                                                   <  2:4263781/93‑1 (MQ=255)
                                         cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACttt                                                >  1:5170270/1‑93 (MQ=255)
                                          gTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTa                                               >  1:3882337/1‑93 (MQ=255)
                                            aGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTAcc                                             <  1:6343484/93‑1 (MQ=255)
                                              aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCaa                                           <  2:3016435/93‑1 (MQ=255)
                                              aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCaa                                           <  1:6216311/93‑1 (MQ=255)
                                              aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCaa                                           <  2:5519676/93‑1 (MQ=255)
                                                tataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATc                                         <  2:2956375/93‑1 (MQ=255)
                                                 ataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATcc                                        <  1:5980111/93‑1 (MQ=255)
                                                 ataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATcc                                        >  2:7639236/1‑93 (MQ=255)
                                                  taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCa                                       <  1:3536717/93‑1 (MQ=255)
                                                  taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCa                                       >  2:6880932/1‑93 (MQ=255)
                                                   aaaCTAGTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCaa                                      <  2:7016574/93‑1 (MQ=255)
                                                   aaaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCaa                                      >  1:2301356/1‑93 (MQ=255)
                                                    aaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAc                                     >  1:6322665/1‑93 (MQ=255)
                                                    aaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAc                                     <  1:1075307/93‑1 (MQ=255)
                                                       tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt                                  >  2:4739094/1‑93 (MQ=255)
                                                       tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt                                  >  2:7577344/1‑93 (MQ=255)
                                                        aaTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTc                                 <  1:4847227/93‑1 (MQ=255)
                                                          tAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAt                               <  1:4048029/93‑1 (MQ=255)
                                                            gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa                             >  1:7834817/1‑93 (MQ=255)
                                                            gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa                             <  1:5824870/93‑1 (MQ=255)
                                                            gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa                             <  2:7618636/93‑1 (MQ=255)
                                                             cAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaa                            >  2:5926492/1‑93 (MQ=255)
                                                               gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca                          >  1:146354/1‑93 (MQ=255)
                                                                 tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                        <  1:7233783/93‑1 (MQ=255)
                                                                 tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                        >  2:6623536/1‑93 (MQ=255)
                                                                 tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                        <  1:7508184/93‑1 (MQ=255)
                                                                 tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                        >  1:4308248/1‑93 (MQ=255)
                                                                 tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                        <  2:5797248/93‑1 (MQ=255)
                                                                   tgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGa                      <  2:6749992/93‑1 (MQ=255)
                                                                     gAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATa                    >  1:2767489/1‑93 (MQ=255)
                                                                      aaaTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAg                   >  1:6169161/1‑93 (MQ=255)
                                                                         tAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa                <  1:6648789/93‑1 (MQ=255)
                                                                         tAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa                <  1:4452460/93‑1 (MQ=255)
                                                                         tAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTa                <  2:4153114/93‑1 (MQ=255)
                                                                          aaaaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg               >  1:2742008/1‑93 (MQ=255)
                                                                           aaaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAGCTTCATGAACAACGATAGCTAGt              >  2:5638361/1‑93 (MQ=255)
                                                                           aaaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGt              >  1:2067203/1‑93 (MQ=255)
                                                                           aaaaCATGAAAACCGCCTACTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGt              >  2:6123475/1‑93 (MQ=255)
                                                                            aaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTg             <  2:1924945/93‑1 (MQ=255)
                                                                               cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa          >  2:1722637/1‑93 (MQ=255)
                                                                               cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa          >  2:389109/1‑93 (MQ=255)
                                                                               cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa          >  1:4530909/1‑93 (MQ=255)
                                                                                 tGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaata        <  1:3225955/93‑1 (MQ=255)
                                                                                 tGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaata        >  2:139041/1‑93 (MQ=255)
                                                                                 tGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaata        <  1:4103650/93‑1 (MQ=255)
                                                                                  gAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataa       >  2:1015852/1‑93 (MQ=255)
                                                                                  gAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataa       <  2:5175713/93‑1 (MQ=255)
                                                                                   aaaaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataat      <  2:4582878/93‑1 (MQ=255)
                                                                                     aaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc    <  1:7575852/93‑1 (MQ=255)
                                                                                      aCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTcc   >  1:256271/1‑93 (MQ=255)
                                                                                      aCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTcc   <  2:43858/93‑1 (MQ=255)
                                                                                       ccGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCa  <  2:2045116/93‑1 (MQ=255)
                                                                                          |                                                                                         
GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA  >  NC_000913/2106870‑2107049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA  >  NC_000913/2106867‑2107053
                                                                                             |                                                                                             
ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGC                                                                                               <  SRR4302543.5392574/94‑1 (MQ=60)
 CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAATAACATGAAAACCGCC                                                                                              >  SRR4302543.7860932/1‑94 (MQ=60)
 CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC                                                                                              <  SRR4302543.2785589/94‑1 (MQ=60)
 CGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCC                                                                                              >  SRR4302543.7600609/1‑94 (MQ=60)
  GGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCT                                                                                             >  SRR4302543.6084966/1‑94 (MQ=60)
  GGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCT                                                                                             <  SRR4302543.1825237/94‑1 (MQ=60)
   GACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTG                                                                                            >  SRR4302543.1850521/1‑94 (MQ=60)
         GGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAG                                                                                      <  SRR4302543.4414921/94‑1 (MQ=60)
         GGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAG                                                                                      <  SRR4302543.763960/94‑1 (MQ=60)
          GTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGA                                                                                     >  SRR4302543.2163617/1‑94 (MQ=60)
          GTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGA                                                                                     >  SRR4302543.1623704/1‑94 (MQ=60)
          GTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGA                                                                                     <  SRR4302543.1058374/94‑1 (MQ=60)
           TCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAT                                                                                    <  SRR4302543.4034000/94‑1 (MQ=60)
           TCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGAT                                                                                    <  SRR4302543.2439984/94‑1 (MQ=60)
            CCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATC                                                                                   <  SRR4302543.7789078/94‑1 (MQ=60)
             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG                                                                                  <  SRR4302543.5071572/94‑1 (MQ=60)
             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCG                                                                                  >  SRR4302543.1936983/1‑94 (MQ=60)
             CAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCA                                                                                  >  SRR4302543.4065658/1‑94 (MQ=60)
              AGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGA                                                                                 <  SRR4302543.1059886/94‑1 (MQ=60)
              AGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGA                                                                                 >  SRR4302543.31730/1‑94 (MQ=60)
               GATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGAC                                                                                <  SRR4302543.7552861/94‑1 (MQ=60)
                ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG                                                                               >  SRR4302543.4801040/1‑94 (MQ=60)
                ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG                                                                               >  SRR4302543.4801041/1‑94 (MQ=60)
                ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG                                                                               >  SRR4302543.5441331/1‑94 (MQ=60)
                ATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACG                                                                               >  SRR4302543.5201161/1‑94 (MQ=60)
                    AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCA                                                                           <  SRR4302543.6534206/94‑1 (MQ=60)
                    AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCA                                                                           <  SRR4302543.4396883/94‑1 (MQ=60)
                    AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCA                                                                           >  SRR4302543.555808/1‑94 (MQ=60)
                       TCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTA                                                                        >  SRR4302543.2917808/1‑94 (MQ=60)
                        CCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAT                                                                       <  SRR4302543.1477445/94‑1 (MQ=60)
                        CCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAT                                                                       >  SRR4302543.6974206/1‑94 (MQ=60)
                         CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATG                                                                      >  SRR4302543.6964765/1‑94 (MQ=60)
                         CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATG                                                                      <  SRR4302543.2171624/94‑1 (MQ=60)
                          CAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGA                                                                     >  SRR4302543.4897611/1‑94 (MQ=60)
                           AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTA                                                                    >  SRR4302543.1514543/1‑94 (MQ=60)
                            GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAA                                                                   >  SRR4302543.6385697/1‑94 (MQ=60)
                            GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAA                                                                   >  SRR4302543.6515863/1‑94 (MQ=60)
                             GATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAAT                                                                  <  SRR4302543.3883193/94‑1 (MQ=60)
                              ATAATAACTATTCGCGTAGAATATAACATAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTCAAGATCGACGCGCATTATGTAATG                                                                 <  SRR4302543.5503170/94‑1 (MQ=60)
                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATG                                                                 <  SRR4302543.7028758/94‑1 (MQ=60)
                              ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATG                                                                 >  SRR4302543.6838019/1‑94 (MQ=60)
                               TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGA                                                                <  SRR4302543.2988818/94‑1 (MQ=60)
                               TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGA                                                                >  SRR4302543.4447772/1‑94 (MQ=60)
                               TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGA                                                                >  SRR4302543.7986826/1‑94 (MQ=60)
                               TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCCGCTAAAGATCGACGCGCATTATGTAATGA                                                                <  SRR4302543.2001234/94‑1 (MQ=60)
                                AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT                                                               >  SRR4302543.4701110/1‑94 (MQ=60)
                                AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT                                                               >  SRR4302543.4273347/1‑94 (MQ=60)
                                AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT                                                               >  SRR4302543.4701109/1‑94 (MQ=60)
                                 ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATA                                                              <  SRR4302543.1811967/94‑1 (MQ=60)
                                 ATAACTATGCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATA                                                              <  SRR4302543.4236564/94‑1 (MQ=60)
                                  TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAG                                                             <  SRR4302543.67660/94‑1 (MQ=60)
                                     CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCTCCTGCTACAGATCGACGCGCATTATGTAATGATAGCGT                                                          >  SRR4302543.4190663/1‑94 (MQ=60)
                                     CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGT                                                          >  SRR4302543.7956990/1‑94 (MQ=60)
                                        TTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAAC                                                       <  SRR4302543.497513/94‑1 (MQ=60)
                                        TTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTCCTAAAGATCGACGCGCATTATGTAATGATAGCGTAAC                                                       >  SRR4302543.2785222/1‑94 (MQ=60)
                                           CCGTAGAATATAAACTAATAGCAGCTGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTT                                                    >  SRR4302543.5216972/1‑94 (MQ=60)
                                           CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTT                                                    >  SRR4302543.5216973/1‑94 (MQ=60)
                                            CGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTA                                                   >  SRR4302543.3916615/1‑94 (MQ=60)
                                               AGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCA                                                <  SRR4302543.6403134/94‑1 (MQ=60)
                                               AGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCA                                                >  SRR4302543.5489416/1‑94 (MQ=60)
                                                 AATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAAT                                              <  SRR4302543.6274994/94‑1 (MQ=60)
                                                    ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCA                                           <  SRR4302543.7897246/94‑1 (MQ=60)
                                                    ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCA                                           <  SRR4302543.6034897/94‑1 (MQ=60)
                                                     TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA                                          <  SRR4302543.3568175/94‑1 (MQ=60)
                                                     TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA                                          >  SRR4302543.2322328/1‑94 (MQ=60)
                                                     TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA                                          <  SRR4302543.2618626/94‑1 (MQ=60)
                                                     TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA                                          <  SRR4302543.2656888/94‑1 (MQ=60)
                                                      AAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAC                                         >  SRR4302543.6382121/1‑94 (MQ=60)
                                                      AAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAC                                         <  SRR4302543.2551006/94‑1 (MQ=60)
                                                       AACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACC                                        >  SRR4302543.1090994/1‑94 (MQ=60)
                                                       AACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACC                                        <  SRR4302543.1084972/94‑1 (MQ=60)
                                                        ACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCT                                       <  SRR4302543.3347753/94‑1 (MQ=60)
                                                         CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT                                      >  SRR4302543.5356846/1‑94 (MQ=60)
                                                         CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT                                      <  SRR4302543.6253758/94‑1 (MQ=60)
                                                           AATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCA                                    <  SRR4302543.4891431/94‑1 (MQ=60)
                                                           AATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCA                                    >  SRR4302543.6228988/1‑94 (MQ=60)
                                                             TAGCAGATGTGGAAATAAAAACATGAAACCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG                                  <  SRR4302543.4980741/94‑1 (MQ=60)
                                                             TAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG                                  <  SRR4302543.4084251/94‑1 (MQ=60)
                                                             TAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG                                  <  SRR4302543.4084252/94‑1 (MQ=60)
                                                              AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA                                 >  SRR4302543.7908572/1‑94 (MQ=60)
                                                               GCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAA                                <  SRR4302543.5877840/94‑1 (MQ=60)
                                                                CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC                               >  SRR4302543.4506216/1‑94 (MQ=60)
                                                                 AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACA                              >  SRR4302543.147625/1‑94 (MQ=60)
                                                                   ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC                            >  SRR4302543.4347385/1‑94 (MQ=60)
                                                                    TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                           <  SRR4302543.5019705/94‑1 (MQ=60)
                                                                    TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                           <  SRR4302543.7257472/94‑1 (MQ=60)
                                                                    TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                           <  SRR4302543.7303833/94‑1 (MQ=60)
                                                                    TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                           <  SRR4302543.7579934/94‑1 (MQ=60)
                                                                    TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                           <  SRR4302543.4354478/94‑1 (MQ=60)
                                                                     GTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGA                          <  SRR4302543.2363662/94‑1 (MQ=60)
                                                                     GTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGA                          >  SRR4302543.3420351/1‑94 (MQ=60)
                                                                      TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTACCTTTCCCAATCAAACCTTCATGAATAACGAT                         >  SRR4302543.825665/1‑94 (MQ=60)
                                                                      TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT                         >  SRR4302543.733901/1‑94 (MQ=60)
                                                                      TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT                         >  SRR4302543.825666/1‑94 (MQ=60)
                                                                       GGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATA                        >  SRR4302543.2792671/1‑94 (MQ=60)
                                                                        GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                       <  SRR4302543.5923660/94‑1 (MQ=60)
                                                                        GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                       >  SRR4302543.6227524/1‑94 (MQ=60)
                                                                        GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                       <  SRR4302543.5772288/94‑1 (MQ=60)
                                                                          AATAAAAACATGAAAACCGCCTGCTAAAGGTCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAAGATAGCA                     >  SRR4302543.6278144/1‑94 (MQ=60)
                                                                          AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT                     <  SRR4302543.2252200/94‑1 (MQ=60)
                                                                          AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT                     >  SRR4302543.3948396/1‑94 (MQ=60)
                                                                          AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT                     <  SRR4302543.6425225/94‑1 (MQ=60)
                                                                           ATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTA                    <  SRR4302543.4040074/94‑1 (MQ=60)
                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAcatag                   >  SRR4302543.2766947/1‑89 (MQ=60)
                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   <  SRR4302543.1932381/94‑1 (MQ=60)
                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   >  SRR4302543.4720718/1‑94 (MQ=60)
                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   >  SRR4302543.2766946/1‑94 (MQ=60)
                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   <  SRR4302543.6711548/94‑1 (MQ=60)
                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   <  SRR4302543.4666698/94‑1 (MQ=60)
                                                                            TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                   <  SRR4302543.4492779/94‑1 (MQ=60)
                                                                             AAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT                  >  SRR4302543.4858307/1‑94 (MQ=60)
                                                                             AAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT                  >  SRR4302543.2085681/1‑94 (MQ=60)
                                                                              AAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTG                 <  SRR4302543.6772760/94‑1 (MQ=60)
                                                                                AACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA               >  SRR4302543.5908705/1‑94 (MQ=60)
                                                                                 ACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAA              >  SRR4302543.4283772/1‑94 (MQ=60)
                                                                                 ACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAA              >  SRR4302543.4572143/1‑94 (MQ=60)
                                                                                  CATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAAT             <  SRR4302543.6658083/94‑1 (MQ=60)
                                                                                  CATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAAT             >  SRR4302543.3741455/1‑94 (MQ=60)
                                                                                   ATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATA            <  SRR4302543.4347944/94‑1 (MQ=60)
                                                                                    TGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA           <  SRR4302543.4140556/94‑1 (MQ=60)
                                                                                    TGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA           >  SRR4302543.3193561/1‑94 (MQ=60)
                                                                                    TGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA           <  SRR4302543.3255119/94‑1 (MQ=60)
                                                                                      AAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATT         >  SRR4302543.2394385/1‑94 (MQ=60)
                                                                                      AAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATT         <  SRR4302543.1222418/94‑1 (MQ=60)
                                                                                        AACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC       <  SRR4302543.7647902/94‑1 (MQ=60)
                                                                                        AACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC       >  SRR4302543.258509/1‑94 (MQ=60)
                                                                                        AACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC       <  SRR4302543.2075649/94‑1 (MQ=60)
                                                                                         ACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA      >  SRR4302543.226092/1‑94 (MQ=60)
                                                                                         ACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA      <  SRR4302543.6354359/94‑1 (MQ=60)
                                                                                            GCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA   <  SRR4302543.7669497/94‑1 (MQ=60)
                                                                                            GCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA   <  SRR4302543.6208004/94‑1 (MQ=60)
                                                                                             CCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAC  >  SRR4302543.6243684/1‑94 (MQ=60)
                                                                                             |                                                                                             
ACGGACGTTGGTCCAGATATAAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAA  >  NC_000913/2106867‑2107053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑