Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,106,978 A→G V210A (GTG→GCG)  rfbX ← putative O‑antigen transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,106,9780AG100.0% 843.1 / NA 263V210A (GTG→GCG) rfbXputative O‑antigen transporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (142/121);  total (142/121)

Only 100 of 273 total aligned reads displayed.

AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTT  >  NC_000913/2106888‑2107067
                                                                                          |                                                                                         
   cccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTa                                                                                      <  2:4239138/93‑1 (MQ=255)
    ccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAt                                                                                     <  2:813836/93‑1 (MQ=255)
    ccAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAt                                                                                     <  1:2152350/93‑1 (MQ=255)
     cAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATg                                                                                    <  2:1627426/93‑1 (MQ=255)
      aGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATga                                                                                   >  1:4853353/1‑92 (MQ=255)
      aGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGt                                                                                   >  2:7289671/1‑93 (MQ=255)
        gATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTaa                                                                                 <  1:3849195/93‑1 (MQ=255)
        gATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTaa                                                                                 <  2:7887417/93‑1 (MQ=255)
         ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAAt                                                                                <  2:6857386/93‑1 (MQ=255)
         ataataACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAAt                                                                                <  1:6963232/93‑1 (MQ=255)
          taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATg                                                                               <  1:2961927/93‑1 (MQ=255)
          taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATg                                                                               >  1:6774028/1‑93 (MQ=255)
          taataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATg                                                                               >  2:2572294/1‑93 (MQ=255)
           aataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGa                                                                              >  2:7481443/1‑93 (MQ=255)
            ataaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAt                                                                             >  1:4658678/1‑93 (MQ=255)
             taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATa                                                                            <  2:1344260/93‑1 (MQ=255)
             taaCTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATa                                                                            <  1:67060/93‑1 (MQ=255)
                 tATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTACAGATCGACGCGCATTATGTAATGATAGCGt                                                                        >  1:4153115/1‑93 (MQ=255)
                 tATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCATGCTAAAGATCGACGCGCATTATGTAATGATAGCga                                                                        >  2:2761808/1‑92 (MQ=255)
                    tCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAATCCGCCTGCTCAAGATCGACGCGCATTATGTAATGATAGCGTaat                                                                     >  2:6025575/1‑92 (MQ=255)
                       cGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACttt                                                                  >  1:5170270/1‑93 (MQ=255)
                          aGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTAcc                                                               <  2:1283841/93‑1 (MQ=255)
                          aGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTAcc                                                               <  1:6343484/93‑1 (MQ=255)
                           gAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCa                                                              >  1:5440029/1‑93 (MQ=255)
                            aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCaa                                                             <  2:3016435/93‑1 (MQ=255)
                            aaTATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCaa                                                             <  1:6216311/93‑1 (MQ=255)
                             atatAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAAt                                                            <  2:6926573/93‑1 (MQ=255)
                              tataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATc                                                           >  2:5708333/1‑93 (MQ=255)
                              tataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATc                                                           >  2:3569768/1‑93 (MQ=255)
                               ataAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATcc                                                          >  2:7639236/1‑93 (MQ=255)
                                taAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCa                                                         >  2:4417747/1‑93 (MQ=255)
                                  aaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAc                                                       <  1:1075307/93‑1 (MQ=255)
                                  aaCTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAc                                                       >  1:6322665/1‑93 (MQ=255)
                                     tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt                                                    >  2:4739094/1‑93 (MQ=255)
                                     tAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCtt                                                    >  2:6414421/1‑93 (MQ=255)
                                      aaTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTc                                                   <  2:1029989/93‑1 (MQ=255)
                                       aTAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCa                                                  >  1:6170619/1‑93 (MQ=255)
                                        tAGCAGATGTGGAAATAAAAACATGAAACCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAt                                                 <  1:4935789/93‑1 (MQ=255)
                                        tAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCAt                                                 <  1:4048030/93‑1 (MQ=255)
                                         aGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATg                                                >  2:5381734/1‑93 (MQ=255)
                                          gCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGa                                               <  2:7618636/93‑1 (MQ=255)
                                           cAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaa                                              <  2:3895124/93‑1 (MQ=255)
                                            aGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaac                                             >  2:7738419/1‑93 (MQ=255)
                                             gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca                                            >  2:5929772/1‑93 (MQ=255)
                                             gATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaaca                                            >  1:146354/1‑93 (MQ=255)
                                               tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                                          <  2:708744/93‑1 (MQ=255)
                                               tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                                          >  2:6687941/1‑93 (MQ=255)
                                               tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                                          <  1:7233783/93‑1 (MQ=255)
                                               tgtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGaacaac                                          >  1:4308248/1‑93 (MQ=255)
                                                gtgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACg                                         <  1:2342414/93‑1 (MQ=255)
                                                 tgGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGa                                        >  1:3389956/1‑93 (MQ=255)
                                                   gAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATa                                      >  1:2767489/1‑93 (MQ=255)
                                                      aTAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCt                                   <  1:4004346/93‑1 (MQ=255)
                                                        aaaaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAg                                 >  1:2742008/1‑93 (MQ=255)
                                                         aaaaCATGAAAACCGCCTACTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGt                                >  2:6123475/1‑93 (MQ=255)
                                                          aaaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTg                               <  2:1924945/93‑1 (MQ=255)
                                                           aaCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGc                              >  2:6803098/1‑93 (MQ=255)
                                                            aCATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCa                             >  1:5855411/1‑93 (MQ=255)
                                                             cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa                            <  2:4140386/93‑1 (MQ=255)
                                                             cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa                            >  1:4530909/1‑93 (MQ=255)
                                                             cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa                            >  1:4245248/1‑93 (MQ=255)
                                                             cATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaa                            >  2:1722637/1‑93 (MQ=255)
                                                               tGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaata                          <  1:3225955/93‑1 (MQ=255)
                                                                gAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataa                         >  2:1015852/1‑93 (MQ=255)
                                                                 aaaaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataat                        <  1:1211523/93‑1 (MQ=255)
                                                                 aaaaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCaataat                        <  2:4582878/93‑1 (MQ=255)
                                                                   aaCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTc                      <  1:7575852/93‑1 (MQ=255)
                                                                    aCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTcc                     >  1:256271/1‑93 (MQ=255)
                                                                     ccGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCa                    >  1:224156/1‑93 (MQ=255)
                                                                     ccGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCa                    <  2:2045116/93‑1 (MQ=255)
                                                                       gccTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACAAATCAAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGc                  <  2:655298/91‑1 (MQ=255)
                                                                         cTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCaa                <  2:5436730/93‑1 (MQ=255)
                                                                          tGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAc               >  1:1627366/1‑93 (MQ=255)
                                                                          tGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAc               >  1:6083481/1‑93 (MQ=255)
                                                                           gCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAcc              <  1:6112150/93‑1 (MQ=255)
                                                                           gCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAcc              >  2:7683/1‑93 (MQ=255)
                                                                           gCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAcc              <  2:5061425/93‑1 (MQ=255)
                                                                            cTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCa             >  2:2952487/1‑93 (MQ=255)
                                                                             tAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCat            >  1:780823/1‑92 (MQ=255)
                                                                             tAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAg            <  2:3256826/93‑1 (MQ=255)
                                                                              aaaGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGa           >  2:5919707/1‑93 (MQ=255)
                                                                              aaaGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGa           >  1:5550623/1‑93 (MQ=255)
                                                                              aaaGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGa           >  2:179748/1‑93 (MQ=255)
                                                                              aaaGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGa           >  1:813305/1‑93 (MQ=255)
                                                                               aaGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAt          >  1:7861030/1‑93 (MQ=255)
                                                                               aaGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAt          >  2:474619/1‑93 (MQ=255)
                                                                               aaGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAt          <  2:4658677/93‑1 (MQ=255)
                                                                               aaGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAt          >  1:4776268/1‑93 (MQ=255)
                                                                                aGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAtt         <  2:4424152/93‑1 (MQ=255)
                                                                                 gATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAttt        <  2:2225234/93‑1 (MQ=255)
                                                                                 gATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAttt        <  2:1331971/93‑1 (MQ=255)
                                                                                     gACGCGCATTATGTAATGATAGCGTATCTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCAc    <  2:3842861/93‑1 (MQ=255)
                                                                                     gACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCAc    <  1:4411839/93‑1 (MQ=255)
                                                                                     gACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCAc    >  2:2555011/1‑93 (MQ=255)
                                                                                     gACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCAc    <  1:1608260/93‑1 (MQ=255)
                                                                                     gACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCAc    >  1:1892809/1‑93 (MQ=255)
                                                                                     gACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCAc    <  1:6492168/93‑1 (MQ=255)
                                                                                      aCGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACt   <  2:5818178/93‑1 (MQ=255)
                                                                                       cgcgCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACtt  >  1:4375208/1‑93 (MQ=255)
                                                                                       cgcgCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACtt  >  1:2016658/1‑93 (MQ=255)
                                                                                          |                                                                                         
AATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTT  >  NC_000913/2106888‑2107067

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTTGACT  >  NC_000913/2106887‑2107071
                                                                                           |                                                                                             
AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCA                                                                                             >  SRR4302543.555808/1‑94 (MQ=60)
AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCA                                                                                             <  SRR4302543.6534206/94‑1 (MQ=60)
AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCA                                                                                             <  SRR4302543.4396883/94‑1 (MQ=60)
   TCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTA                                                                                          >  SRR4302543.2917808/1‑94 (MQ=60)
    CCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAT                                                                                         >  SRR4302543.6974206/1‑94 (MQ=60)
    CCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTAT                                                                                         <  SRR4302543.1477445/94‑1 (MQ=60)
     CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATG                                                                                        >  SRR4302543.6964765/1‑94 (MQ=60)
     CCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATG                                                                                        <  SRR4302543.2171624/94‑1 (MQ=60)
      CAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGA                                                                                       >  SRR4302543.4897611/1‑94 (MQ=60)
       AGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTA                                                                                      >  SRR4302543.1514543/1‑94 (MQ=60)
        GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAA                                                                                     >  SRR4302543.6385697/1‑94 (MQ=60)
        GGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAA                                                                                     >  SRR4302543.6515863/1‑94 (MQ=60)
         GATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAAT                                                                                    <  SRR4302543.3883193/94‑1 (MQ=60)
          ATAATAACTATTCGCGTAGAATATAACATAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTCAAGATCGACGCGCATTATGTAATG                                                                                   <  SRR4302543.5503170/94‑1 (MQ=60)
          ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATG                                                                                   >  SRR4302543.6838019/1‑94 (MQ=60)
          ATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATG                                                                                   <  SRR4302543.7028758/94‑1 (MQ=60)
           TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGA                                                                                  <  SRR4302543.2988818/94‑1 (MQ=60)
           TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGA                                                                                  >  SRR4302543.7986826/1‑94 (MQ=60)
           TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGA                                                                                  >  SRR4302543.4447772/1‑94 (MQ=60)
           TAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCCGCTAAAGATCGACGCGCATTATGTAATGA                                                                                  <  SRR4302543.2001234/94‑1 (MQ=60)
            AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT                                                                                 >  SRR4302543.4701109/1‑94 (MQ=60)
            AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT                                                                                 >  SRR4302543.4701110/1‑94 (MQ=60)
            AATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGAT                                                                                 >  SRR4302543.4273347/1‑94 (MQ=60)
             ATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATA                                                                                <  SRR4302543.1811967/94‑1 (MQ=60)
             ATAACTATGCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATA                                                                                <  SRR4302543.4236564/94‑1 (MQ=60)
              TAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAG                                                                               <  SRR4302543.67660/94‑1 (MQ=60)
                 CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCTCCTGCTACAGATCGACGCGCATTATGTAATGATAGCGT                                                                            >  SRR4302543.4190663/1‑94 (MQ=60)
                 CTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGT                                                                            >  SRR4302543.7956990/1‑94 (MQ=60)
                    TTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAAC                                                                         <  SRR4302543.497513/94‑1 (MQ=60)
                    TTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTCCTAAAGATCGACGCGCATTATGTAATGATAGCGTAAC                                                                         >  SRR4302543.2785222/1‑94 (MQ=60)
                       CCGTAGAATATAAACTAATAGCAGCTGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTT                                                                      >  SRR4302543.5216972/1‑94 (MQ=60)
                       CCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTT                                                                      >  SRR4302543.5216973/1‑94 (MQ=60)
                        CGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTA                                                                     >  SRR4302543.3916615/1‑94 (MQ=60)
                           AGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCA                                                                  >  SRR4302543.5489416/1‑94 (MQ=60)
                           AGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCA                                                                  <  SRR4302543.6403134/94‑1 (MQ=60)
                             AATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAAT                                                                <  SRR4302543.6274994/94‑1 (MQ=60)
                                ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCA                                                             <  SRR4302543.7897246/94‑1 (MQ=60)
                                ATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCA                                                             <  SRR4302543.6034897/94‑1 (MQ=60)
                                 TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA                                                            <  SRR4302543.3568175/94‑1 (MQ=60)
                                 TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA                                                            <  SRR4302543.2656888/94‑1 (MQ=60)
                                 TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA                                                            <  SRR4302543.2618626/94‑1 (MQ=60)
                                 TAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAA                                                            >  SRR4302543.2322328/1‑94 (MQ=60)
                                  AAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAC                                                           >  SRR4302543.6382121/1‑94 (MQ=60)
                                  AAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAAC                                                           <  SRR4302543.2551006/94‑1 (MQ=60)
                                   AACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACC                                                          >  SRR4302543.1090994/1‑94 (MQ=60)
                                   AACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACC                                                          <  SRR4302543.1084972/94‑1 (MQ=60)
                                    ACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCT                                                         <  SRR4302543.3347753/94‑1 (MQ=60)
                                     CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT                                                        >  SRR4302543.5356846/1‑94 (MQ=60)
                                     CTAATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTT                                                        <  SRR4302543.6253758/94‑1 (MQ=60)
                                       AATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCA                                                      >  SRR4302543.6228988/1‑94 (MQ=60)
                                       AATAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCA                                                      <  SRR4302543.4891431/94‑1 (MQ=60)
                                         TAGCAGATGTGGAAATAAAAACATGAAACCCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG                                                    <  SRR4302543.4980741/94‑1 (MQ=60)
                                         TAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG                                                    <  SRR4302543.4084251/94‑1 (MQ=60)
                                         TAGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATG                                                    <  SRR4302543.4084252/94‑1 (MQ=60)
                                          AGCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGA                                                   >  SRR4302543.7908572/1‑94 (MQ=60)
                                           GCAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAA                                                  <  SRR4302543.5877840/94‑1 (MQ=60)
                                            CAGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAAC                                                 >  SRR4302543.4506216/1‑94 (MQ=60)
                                             AGATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACA                                                >  SRR4302543.147625/1‑94 (MQ=60)
                                               ATGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAC                                              >  SRR4302543.4347385/1‑94 (MQ=60)
                                                TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                                             <  SRR4302543.5019705/94‑1 (MQ=60)
                                                TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                                             <  SRR4302543.4354478/94‑1 (MQ=60)
                                                TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                                             <  SRR4302543.7579934/94‑1 (MQ=60)
                                                TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                                             <  SRR4302543.7303833/94‑1 (MQ=60)
                                                TGTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACG                                             <  SRR4302543.7257472/94‑1 (MQ=60)
                                                 GTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGA                                            <  SRR4302543.2363662/94‑1 (MQ=60)
                                                 GTGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGA                                            >  SRR4302543.3420351/1‑94 (MQ=60)
                                                  TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTACCTTTCCCAATCAAACCTTCATGAATAACGAT                                           >  SRR4302543.825665/1‑94 (MQ=60)
                                                  TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT                                           >  SRR4302543.733901/1‑94 (MQ=60)
                                                  TGGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGAT                                           >  SRR4302543.825666/1‑94 (MQ=60)
                                                   GGAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATA                                          >  SRR4302543.2792671/1‑94 (MQ=60)
                                                    GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                                         >  SRR4302543.6227524/1‑94 (MQ=60)
                                                    GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                                         <  SRR4302543.5923660/94‑1 (MQ=60)
                                                    GAAATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAG                                         <  SRR4302543.5772288/94‑1 (MQ=60)
                                                      AATAAAAACATGAAAACCGCCTGCTAAAGGTCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAAAGATAGCA                                       >  SRR4302543.6278144/1‑94 (MQ=60)
                                                      AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT                                       <  SRR4302543.2252200/94‑1 (MQ=60)
                                                      AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT                                       <  SRR4302543.6425225/94‑1 (MQ=60)
                                                      AATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCT                                       >  SRR4302543.3948396/1‑94 (MQ=60)
                                                       ATAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTA                                      <  SRR4302543.4040074/94‑1 (MQ=60)
                                                        TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAcatag                                     >  SRR4302543.2766947/1‑89 (MQ=60)
                                                        TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                                     <  SRR4302543.4666698/94‑1 (MQ=60)
                                                        TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                                     <  SRR4302543.1932381/94‑1 (MQ=60)
                                                        TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                                     <  SRR4302543.6711548/94‑1 (MQ=60)
                                                        TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                                     >  SRR4302543.2766946/1‑94 (MQ=60)
                                                        TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                                     <  SRR4302543.4492779/94‑1 (MQ=60)
                                                        TAAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAG                                     >  SRR4302543.4720718/1‑94 (MQ=60)
                                                         AAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT                                    >  SRR4302543.2085681/1‑94 (MQ=60)
                                                         AAAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGT                                    >  SRR4302543.4858307/1‑94 (MQ=60)
                                                          AAAACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTG                                   <  SRR4302543.6772760/94‑1 (MQ=60)
                                                            AACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCA                                 >  SRR4302543.5908705/1‑94 (MQ=60)
                                                             ACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAA                                >  SRR4302543.4572143/1‑94 (MQ=60)
                                                             ACATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAA                                >  SRR4302543.4283772/1‑94 (MQ=60)
                                                              CATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAAT                               <  SRR4302543.6658083/94‑1 (MQ=60)
                                                              CATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAAT                               >  SRR4302543.3741455/1‑94 (MQ=60)
                                                               ATGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATA                              <  SRR4302543.4347944/94‑1 (MQ=60)
                                                                TGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA                             <  SRR4302543.4140556/94‑1 (MQ=60)
                                                                TGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA                             <  SRR4302543.3255119/94‑1 (MQ=60)
                                                                TGAAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAA                             >  SRR4302543.3193561/1‑94 (MQ=60)
                                                                  AAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATT                           <  SRR4302543.1222418/94‑1 (MQ=60)
                                                                  AAAACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATT                           >  SRR4302543.2394385/1‑94 (MQ=60)
                                                                    AACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC                         <  SRR4302543.7647902/94‑1 (MQ=60)
                                                                    AACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC                         >  SRR4302543.258509/1‑94 (MQ=60)
                                                                    AACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCC                         <  SRR4302543.2075649/94‑1 (MQ=60)
                                                                     ACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA                        <  SRR4302543.6354359/94‑1 (MQ=60)
                                                                     ACCGCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCA                        >  SRR4302543.226092/1‑94 (MQ=60)
                                                                        GCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA                     <  SRR4302543.6208004/94‑1 (MQ=60)
                                                                        GCCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCA                     <  SRR4302543.7669497/94‑1 (MQ=60)
                                                                         CCTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAC                    >  SRR4302543.6243684/1‑94 (MQ=60)
                                                                          CTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAC                   >  SRR4302543.1641858/1‑94 (MQ=60)
                                                                          CTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAC                   >  SRR4302543.1641859/1‑94 (MQ=60)
                                                                          CTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAC                   >  SRR4302543.6141138/1‑94 (MQ=60)
                                                                          CTGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAAC                   >  SRR4302543.6141136/1‑94 (MQ=60)
                                                                           TGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTTGTGCAATAATTCCAGCAACC                  >  SRR4302543.2852122/1‑94 (MQ=60)
                                                                           TGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACC                  <  SRR4302543.4081433/94‑1 (MQ=60)
                                                                           TGCTAAAGATCGACGCGCATTATGTAATGATAGCGTAAATTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACC                  <  SRR4302543.7093085/94‑1 (MQ=60)
                                                                            GCTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCA                 <  SRR4302543.6170050/94‑1 (MQ=60)
                                                                             CTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAT                >  SRR4302543.787686/1‑94 (MQ=60)
                                                                             CTAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAG                <  SRR4302543.1319142/94‑1 (MQ=60)
                                                                              TAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGA               >  SRR4302543.5601102/1‑94 (MQ=60)
                                                                              TAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGA               >  SRR4302543.820466/1‑94 (MQ=60)
                                                                              TAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGA               >  SRR4302543.4336895/1‑94 (MQ=60)
                                                                              TAAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGA               >  SRR4302543.1649654/1‑94 (MQ=60)
                                                                               AAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAT              >  SRR4302543.7935070/1‑94 (MQ=60)
                                                                               AAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGAT              >  SRR4302543.4819921/1‑94 (MQ=60)
                                                                               AAAGATCGACGCGCATTATGTAATGATAGCGTAACTTTAATAATACAACCTTCATGAACAACGATAGCTAGTGAAATAATTCACGCAACCAGAT              >  SRR4302543.7935071/1‑94 (MQ=60)
                                                                                AAGATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATT             >  SRR4302543.2328978/1‑94 (MQ=60)
                                                                                  GATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCATCCAGATTTG           >  SRR4302543.1334591/1‑94 (MQ=60)
                                                                                  GATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTG           >  SRR4302543.311192/1‑94 (MQ=60)
                                                                                   ATCGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGC          >  SRR4302543.4917726/1‑94 (MQ=60)
                                                                                     CGACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCAC        >  SRR4302543.1909833/1‑94 (MQ=60)
                                                                                      GACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACT       <  SRR4302543.1622607/94‑1 (MQ=60)
                                                                                      GACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACT       <  SRR4302543.6553329/94‑1 (MQ=60)
                                                                                      GACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACT       <  SRR4302543.4451825/94‑1 (MQ=60)
                                                                                       ACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTT      >  SRR4302543.4414848/1‑94 (MQ=60)
                                                                                       ACGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTT      >  SRR4302543.2034780/1‑94 (MQ=60)
                                                                                        CGCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTTG     <  SRR4302543.433326/94‑1 (MQ=60)
                                                                                         GCGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTTGA    >  SRR4302543.5459956/1‑94 (MQ=60)
                                                                                          CGCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTTGAC   <  SRR4302543.3791496/94‑1 (MQ=60)
                                                                                           GCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTTCAATAATTCCAGCAACCAGATTTGCACTTGACT  <  SRR4302543.4008637/94‑1 (MQ=60)
                                                                                           GCATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTTGACT  >  SRR4302543.7568045/1‑94 (MQ=60)
                                                                                           |                                                                                             
AAATCCCAGGATAATAACTATTCCCGTAGAATATAAACTAATAGCAGATGTGGAAATAAAAACATGAAAACCGTCTGCTAAAGATCGACGCACATTATGTAATGATAGCGTAACTTTACCAATCCAACCTTCATGAACAACGATAGCTAGTGCAATAATTCCAGCAACCAGATTTGCACTTGACT  >  NC_000913/2106887‑2107071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑