Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,107,690 C→T W157* (TGG→TGA)  rfbC ← dTDP‑6‑deoxy‑D‑glucose‑3,5 epimerase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,107,6900CT99.6% 890.8 / NA 251W157* (TGG→TGA) rfbCdTDP‑6‑deoxy‑D‑glucose‑3,5 epimerase
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (104/146);  total (105/146)
Fisher's exact test for biased strand distribution p-value = 4.18e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 260 total aligned reads displayed.

TATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGC  >  NC_000913/2107600‑2107779
                                                                                          |                                                                                         
tATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTca                                                                                         <  1:3039631/93‑1 (MQ=255)
 aTTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTcaa                                                                                        >  1:888494/1‑93 (MQ=255)
  ttCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTcaat                                                                                       <  2:6592536/93‑1 (MQ=255)
   tCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTcaatc                                                                                      <  1:395865/93‑1 (MQ=255)
    cATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTcaatca                                                                                     >  2:1386392/1‑93 (MQ=255)
    cATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTcaatca                                                                                     >  2:3429871/1‑93 (MQ=255)
    cATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTcaatca                                                                                     >  2:4323562/1‑93 (MQ=255)
     aTGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGtcaatcaa                                                                                    >  1:458451/1‑93 (MQ=255)
      tGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTcaatcaat                                                                                   <  2:2280863/93‑1 (MQ=255)
       gCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGTATTAACCCTGATGTTTGGGCTCAATCAAtt                                                                                  <  1:2677490/93‑1 (MQ=255)
        cAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTg                                                                                 >  2:7674450/1‑93 (MQ=255)
        cAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTg                                                                                 >  1:5144231/1‑93 (MQ=255)
        cAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTg                                                                                 <  1:278819/93‑1 (MQ=255)
           ttaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCaa                                                                              <  2:7931166/93‑1 (MQ=255)
           ttaattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCaa                                                                              >  2:1583033/1‑93 (MQ=255)
            taattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAAt                                                                             >  1:5667830/1‑93 (MQ=255)
             aattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATg                                                                            <  1:6808366/93‑1 (MQ=255)
             aattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATg                                                                            <  1:2065873/93‑1 (MQ=255)
             aattTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATg                                                                            >  1:1528359/1‑93 (MQ=255)
              attTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGc                                                                           >  1:4133017/1‑93 (MQ=255)
              attTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGc                                                                           <  2:2851096/93‑1 (MQ=255)
                tttAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGt                                                                         <  2:365369/93‑1 (MQ=255)
                  tAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTtc                                                                       <  1:4860598/93‑1 (MQ=255)
                   aaTCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTtca                                                                      >  2:7146351/1‑93 (MQ=255)
                   aaTCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTATGGCGAAAGGAATAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTtca                                                                      <  1:7020210/93‑1 (MQ=255)
                    aTCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTtcat                                                                     <  2:4949134/93‑1 (MQ=255)
                     tCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTtcatc                                                                    >  1:1393653/1‑93 (MQ=255)
                      cTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTtcatca                                                                   <  1:7173888/93‑1 (MQ=255)
                      cTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTtcatca                                                                   <  1:669761/93‑1 (MQ=255)
                      cTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTtcatca                                                                   <  1:6449018/93‑1 (MQ=255)
                       tGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTcatcat                                                                  >  2:46873/1‑93 (MQ=255)
                       tGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTcatcat                                                                  >  2:7075489/1‑93 (MQ=255)
                       tGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTcatcat                                                                  <  1:5628225/93‑1 (MQ=255)
                        gATAAGCTCATCTAACGTAAAGAGCCTCTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAtt                                                                 <  1:1174662/93‑1 (MQ=255)
                         aTAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTc                                                                <  1:5823824/93‑1 (MQ=255)
                         aTAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTc                                                                <  2:243740/93‑1 (MQ=255)
                          tAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTcc                                                               >  1:2502727/1‑93 (MQ=255)
                            aGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCaa                                                             >  1:1837887/1‑93 (MQ=255)
                             gCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAc                                                            >  1:5780664/1‑93 (MQ=255)
                             gCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAc                                                            >  1:2401242/1‑93 (MQ=255)
                             gCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAc                                                            <  1:6741774/93‑1 (MQ=255)
                              cTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACa                                                           <  2:4127904/93‑1 (MQ=255)
                               tCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACat                                                          >  1:223128/1‑93 (MQ=255)
                                cATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACata                                                         <  1:4300857/93‑1 (MQ=255)
                                 aTCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACatat                                                        >  1:5225901/1‑93 (MQ=255)
                                 aTCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACatat                                                        <  1:2555469/93‑1 (MQ=255)
                                  tCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAtt                                                       <  2:2233659/93‑1 (MQ=255)
                                  tCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAtt                                                       >  1:6125077/1‑93 (MQ=255)
                                   cTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTc                                                      <  1:3574647/93‑1 (MQ=255)
                                   cTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTc                                                      >  2:591180/1‑93 (MQ=255)
                                    tAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTcc                                                     >  2:534885/1‑93 (MQ=255)
                                    tAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTcc                                                     <  2:7852886/93‑1 (MQ=255)
                                    tAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTcc                                                     <  2:7775606/93‑1 (MQ=255)
                                         tAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAt                                                >  2:6286822/1‑93 (MQ=255)
                                         tAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAt                                                >  2:7368481/1‑93 (MQ=255)
                                         gaaaGAGCCTTTCATCTTTTGGCGCAAGCATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAt                                                <  1:6625501/92‑1 (MQ=255)
                                          aaaGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATc                                               <  2:6312545/93‑1 (MQ=255)
                                             gagCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCt                                            <  2:4808689/93‑1 (MQ=255)
                                             gagCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATAGCt                                            >  2:6478304/1‑93 (MQ=255)
                                              agCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCtt                                           <  1:4470863/93‑1 (MQ=255)
                                               gCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCttt                                          <  1:7936987/93‑1 (MQ=255)
                                                ccTTTCTTCTTTTGGCGCACGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTc                                         <  2:7035509/93‑1 (MQ=255)
                                                 cTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCa                                        <  1:361323/93‑1 (MQ=255)
                                                  tttCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAg                                       >  2:5535565/1‑93 (MQ=255)
                                                  tttCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAg                                       >  1:7704909/1‑93 (MQ=255)
                                                    tCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGga                                     <  1:7353082/93‑1 (MQ=255)
                                                    tCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGga                                     <  1:4074081/93‑1 (MQ=255)
                                                       tCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGgatga                                  >  2:6701788/1‑93 (MQ=255)
                                                       tCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGgatga                                  <  1:5546471/93‑1 (MQ=255)
                                                         ttttGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGata                                <  2:2154310/93‑1 (MQ=255)
                                                           ttGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGataat                              <  2:5315634/93‑1 (MQ=255)
                                                             ggCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAg                            <  2:6787095/93‑1 (MQ=255)
                                                             ggCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAg                            >  2:3986722/1‑93 (MQ=255)
                                                             ggCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAg                            <  1:4501933/93‑1 (MQ=255)
                                                              gCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGt                           <  1:3987937/93‑1 (MQ=255)
                                                               cGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGtt                          <  1:371898/93‑1 (MQ=255)
                                                                gAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGttt                         <  1:1320371/93‑1 (MQ=255)
                                                                gAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGttt                         <  2:3189704/93‑1 (MQ=255)
                                                                gAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGttt                         >  1:6303907/1‑93 (MQ=255)
                                                                gAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGttt                         <  2:211544/93‑1 (MQ=255)
                                                                gAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGttt                         <  2:2049501/93‑1 (MQ=255)
                                                                 aaaGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTg                        >  2:2655214/1‑93 (MQ=255)
                                                                   aGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTa                      >  2:4402881/1‑93 (MQ=255)
                                                                   aGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTa                      <  2:1933909/93‑1 (MQ=255)
                                                                       ttAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGttt                  <  2:6239918/93‑1 (MQ=255)
                                                                       ttAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGttt                  <  1:1740199/93‑1 (MQ=255)
                                                                       ttAACCCTGATGTTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGttt                  >  2:1288748/1‑93 (MQ=255)
                                                                         aaCCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTta                <  1:6336625/93‑1 (MQ=255)
                                                                         aaCCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGAAGTTTta                <  2:3237479/93‑1 (MQ=255)
                                                                          aCCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTtat               <  2:3760224/93‑1 (MQ=255)
                                                                           cccTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTtata              >  1:1042028/1‑93 (MQ=255)
                                                                           cccTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTtata              >  2:4435473/1‑93 (MQ=255)
                                                                             cTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATAtt            <  1:5434695/93‑1 (MQ=255)
                                                                              tGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTg           >  1:5924749/1‑93 (MQ=255)
                                                                                  gTTTGGGGTCAATCAGTTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAAt       >  2:7821225/1‑93 (MQ=255)
                                                                                   tttGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAAtt      >  2:1468181/1‑93 (MQ=255)
                                                                                    ttGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTc     <  1:3356014/93‑1 (MQ=255)
                                                                                     tGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCa    <  1:6806693/93‑1 (MQ=255)
                                                                                      ggggTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAg   <  1:3344143/93‑1 (MQ=255)
                                                                                       gggTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGc  <  1:7674451/93‑1 (MQ=255)
                                                                                          |                                                                                         
TATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGC  >  NC_000913/2107600‑2107779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGAT  >  NC_000913/2107597‑2107782
                                                                                             |                                                                                            
TCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGT                                                                                              >  SRR4302543.6278453/1‑94 (MQ=60)
 CGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTC                                                                                             >  SRR4302543.5050797/1‑94 (MQ=60)
 CGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTC                                                                                             >  SRR4302543.5848001/1‑94 (MQ=60)
   TATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAA                                                                                           >  SRR4302543.896361/1‑94 (MQ=60)
   TATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAA                                                                                           <  SRR4302543.3067048/94‑1 (MQ=60)
    ATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAAT                                                                                          >  SRR4302543.6774160/1‑94 (MQ=60)
     TTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATC                                                                                         >  SRR4302543.1476455/1‑94 (MQ=60)
      TCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCA                                                                                        <  SRR4302543.399522/94‑1 (MQ=60)
      TCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCA                                                                                        >  SRR4302543.2912245/1‑94 (MQ=60)
      TCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCA                                                                                        <  SRR4302543.5729886/94‑1 (MQ=60)
       CATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAA                                                                                       >  SRR4302543.7539397/1‑94 (MQ=60)
       CATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAA                                                                                       >  SRR4302543.7539396/1‑94 (MQ=60)
       CATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAA                                                                                       >  SRR4302543.462707/1‑94 (MQ=60)
       CATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAA                                                                                       >  SRR4302543.6378636/1‑94 (MQ=60)
        ATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAAT                                                                                      >  SRR4302543.5696113/1‑94 (MQ=60)
         TGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATT                                                                                     <  SRR4302543.3970646/94‑1 (MQ=60)
          GCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGTATTAACCCTGATGTTTGGGCTCAATCAATTG                                                                                    <  SRR4302543.2701760/94‑1 (MQ=60)
          GCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTG                                                                                    >  SRR4302543.5190740/1‑94 (MQ=60)
           CAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGC                                                                                   <  SRR4302543.281289/94‑1 (MQ=60)
              TTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAAT                                                                                >  SRR4302543.5719547/1‑94 (MQ=60)
               TAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATG                                                                               >  SRR4302543.1542074/1‑94 (MQ=60)
                AATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGC                                                                              >  SRR4302543.4170309/1‑94 (MQ=60)
                AATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGC                                                                              <  SRR4302543.6872650/94‑1 (MQ=60)
                AATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGC                                                                              <  SRR4302543.2084344/94‑1 (MQ=60)
                 ATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCG                                                                             <  SRR4302543.6237660/94‑1 (MQ=60)
                     TAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCA                                                                         <  SRR4302543.4904918/94‑1 (MQ=60)
                     TAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCA                                                                         <  SRR4302543.5857338/94‑1 (MQ=60)
                      AATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCAT                                                                        <  SRR4302543.1675746/94‑1 (MQ=60)
                      AATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCAT                                                                        >  SRR4302543.6582483/1‑94 (MQ=60)
                      AATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCAT                                                                        <  SRR4302543.4947932/94‑1 (MQ=60)
                      AATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTATGGCGAAAGGAATAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCAT                                                                        <  SRR4302543.7087408/94‑1 (MQ=60)
                       ATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATC                                                                       >  SRR4302543.1406206/1‑94 (MQ=60)
                        TCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCA                                                                      <  SRR4302543.1578230/94‑1 (MQ=60)
                         CTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAT                                                                     <  SRR4302543.7243533/94‑1 (MQ=60)
                         CTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAT                                                                     <  SRR4302543.675930/94‑1 (MQ=60)
                         CTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAT                                                                     >  SRR4302543.6139997/1‑94 (MQ=60)
                         CTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAT                                                                     >  SRR4302543.6848646/1‑94 (MQ=60)
                         CTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAT                                                                     <  SRR4302543.6509787/94‑1 (MQ=60)
                         CTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAT                                                                     <  SRR4302543.2411739/94‑1 (MQ=60)
                         CTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCAT                                                                     <  SRR4302543.4550391/94‑1 (MQ=60)
                          TGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATT                                                                    >  SRR4302543.4133751/1‑94 (MQ=60)
                          TGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATT                                                                    <  SRR4302543.4583864/94‑1 (MQ=60)
                          TGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATT                                                                    <  SRR4302543.4222409/94‑1 (MQ=60)
                          TGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATT                                                                    <  SRR4302543.5679513/94‑1 (MQ=60)
                          TGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATT                                                                    <  SRR4302543.5705729/94‑1 (MQ=60)
                          TGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATT                                                                    <  SRR4302543.6409153/94‑1 (MQ=60)
                           GATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTC                                                                   <  SRR4302543.2501962/94‑1 (MQ=60)
                           GATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTC                                                                   >  SRR4302543.2433123/1‑94 (MQ=60)
                           GATAAGCTCATCTAACGTAAAGAGCCTCTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTC                                                                   <  SRR4302543.1185305/94‑1 (MQ=60)
                            ATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCC                                                                  >  SRR4302543.2525445/1‑94 (MQ=60)
                            ATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCC                                                                  <  SRR4302543.5876788/94‑1 (MQ=60)
                            ATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCC                                                                  >  SRR4302543.4011606/1‑94 (MQ=60)
                            ATAAGCTCATCTAACGTAAAGAGCCTTTAATCTTTTGGCGAAAGGATTAAACCTGATGTTTGGGGTCAATCAATTGCAATGAGTTCCTCATTCC                                                                  >  SRR4302543.2525449/1‑94 (MQ=60)
                              AAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAA                                                                <  SRR4302543.2389885/94‑1 (MQ=60)
                              AAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAA                                                                >  SRR4302543.1854419/1‑94 (MQ=60)
                              AAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAA                                                                >  SRR4302543.1437872/1‑94 (MQ=60)
                               AGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAC                                                               >  SRR4302543.2422955/1‑94 (MQ=60)
                               AGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAC                                                               >  SRR4302543.5833271/1‑94 (MQ=60)
                               AGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAAC                                                               <  SRR4302543.4634973/94‑1 (MQ=60)
                                GCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACA                                                              >  SRR4302543.4444669/1‑94 (MQ=60)
                                GCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACA                                                              <  SRR4302543.6805441/94‑1 (MQ=60)
                                 CTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACAT                                                             >  SRR4302543.225055/1‑94 (MQ=60)
                                  TCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATA                                                            <  SRR4302543.4041548/94‑1 (MQ=60)
                                   CATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAT                                                           >  SRR4302543.5272956/1‑94 (MQ=60)
                                   CATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAT                                                           <  SRR4302543.4339932/94‑1 (MQ=60)
                                   CATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATAT                                                           >  SRR4302543.704751/1‑94 (MQ=60)
                                    ATCTAACGTAAAGAGCCTTTCATCTTTTGTCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATT                                                          <  SRR4302543.6752034/94‑1 (MQ=60)
                                    ATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATT                                                          <  SRR4302543.2578833/94‑1 (MQ=60)
                                    ATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATT                                                          >  SRR4302543.6871526/1‑94 (MQ=60)
                                    ATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATT                                                          <  SRR4302543.2578834/94‑1 (MQ=60)
                                    ATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATT                                                          >  SRR4302543.6183087/1‑94 (MQ=60)
                                      CTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCC                                                        <  SRR4302543.3606240/94‑1 (MQ=60)
                                       TAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCA                                                       >  SRR4302543.3601178/1‑94 (MQ=60)
                                        AACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCAC                                                      <  SRR4302543.7770115/94‑1 (MQ=60)
                                         ACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACA                                                     >  SRR4302543.3379764/1‑94 (MQ=60)
                                          CGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAA                                                    >  SRR4302543.5968696/1‑94 (MQ=60)
                                           GTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAT                                                   >  SRR4302543.524465/1‑94 (MQ=60)
                                           GTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAAT                                                   <  SRR4302543.3313414/94‑1 (MQ=60)
                                            GAAAGAGCCTTTCATCTTTTGGCGCAAGCATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATC                                                  <  SRR4302543.6687983/94‑1 (MQ=60)
                                             AAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCG                                                 >  SRR4302543.1304891/1‑94 (MQ=60)
                                             AAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCG                                                 >  SRR4302543.1998966/1‑94 (MQ=60)
                                             AAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCG                                                 <  SRR4302543.3665107/94‑1 (MQ=60)
                                                GAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTT                                              <  SRR4302543.1839883/94‑1 (MQ=60)
                                                 AGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTT                                             <  SRR4302543.4511411/94‑1 (MQ=60)
                                                  GCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTC                                            <  SRR4302543.706497/94‑1 (MQ=60)
                                                  GCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTC                                            <  SRR4302543.8011482/94‑1 (MQ=60)
                                                   CCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGCTCATCATTCCTACATATTCTACAATCGCTTTCA                                           >  SRR4302543.5536727/1‑94 (MQ=60)
                                                    CTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAG                                          >  SRR4302543.508220/1‑94 (MQ=60)
                                                    CTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAG                                          >  SRR4302543.7777808/1‑94 (MQ=60)
                                                    CTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAG                                          <  SRR4302543.364662/94‑1 (MQ=60)
                                                    ATTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAG                                          <  SRR4302543.5796415/94‑1 (MQ=60)
                                                     TTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGG                                         <  SRR4302543.1085102/94‑1 (MQ=60)
                                                       TCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGAT                                       <  SRR4302543.5638834/94‑1 (MQ=60)
                                                       TCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGAT                                       <  SRR4302543.4110586/94‑1 (MQ=60)
                                                       TCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGAT                                       <  SRR4302543.7423815/94‑1 (MQ=60)
                                                          TCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGAT                                    <  SRR4302543.5596907/94‑1 (MQ=60)
                                                          TCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGAT                                    >  SRR4302543.2245662/1‑94 (MQ=60)
                                                           CTTTTGGCGAAAGGATTCACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATA                                   <  SRR4302543.7114201/94‑1 (MQ=60)
                                                           CTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATA                                   >  SRR4302543.3983099/1‑94 (MQ=60)
                                                             TTTGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAAT                                 <  SRR4302543.548614/94‑1 (MQ=60)
                                                               TGGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAG                               <  SRR4302543.4375192/94‑1 (MQ=60)
                                                               TGGCGAAAGGATTAACCCTGANNTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAG                               <  SRR4302543.1221681/94‑1 (MQ=60)
                                                                GGCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGT                              <  SRR4302543.4542861/94‑1 (MQ=60)
                                                                 GCGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTT                             <  SRR4302543.4023365/94‑1 (MQ=60)
                                                                  cgcacgtATTAACGCTGATGTTTGTGGTCAATCAATTGCAATGCGGTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTT                            <  SRR4302543.375328/87‑1 (MQ=60)
                                                                  CGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTT                            <  SRR4302543.375327/94‑1 (MQ=60)
                                                                  CGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTT                            >  SRR4302543.2835101/1‑94 (MQ=60)
                                                                  CGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTT                            >  SRR4302543.1000186/1‑94 (MQ=60)
                                                                  CGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTT                            >  SRR4302543.6185541/1‑94 (MQ=60)
                                                                  CGAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTT                            >  SRR4302543.6363211/1‑94 (MQ=60)
                                                                   GAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTG                           >  SRR4302543.7778959/1‑94 (MQ=60)
                                                                   GAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTG                           <  SRR4302543.1332106/94‑1 (MQ=60)
                                                                   GAAAGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTG                           >  SRR4302543.275870/1‑94 (MQ=60)
                                                                      AGGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAG                        <  SRR4302543.4091391/94‑1 (MQ=60)
                                                                       GGATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGT                       >  SRR4302543.7265290/1‑94 (MQ=60)
                                                                         ATTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTT                     <  SRR4302543.3537051/94‑1 (MQ=60)
                                                                          TTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTT                    >  SRR4302543.845063/1‑94 (MQ=60)
                                                                          TTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTT                    <  SRR4302543.7927693/94‑1 (MQ=60)
                                                                          TTAACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTT                    <  SRR4302543.1755723/94‑1 (MQ=60)
                                                                            AACCCTGATGTTTGGGGTCAATCAATTGCAATTCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTAT                  <  SRR4302543.7347196/94‑1 (MQ=60)
                                                                            AACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTAT                  <  SRR4302543.686829/94‑1 (MQ=60)
                                                                            AACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTAT                  <  SRR4302543.3723680/94‑1 (MQ=60)
                                                                            AACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTAT                  <  SRR4302543.6396216/94‑1 (MQ=60)
                                                                            AACCCTGATGTGTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTAT                  <  SRR4302543.6675736/94‑1 (MQ=60)
                                                                             ACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATA                 >  SRR4302543.1051315/1‑94 (MQ=60)
                                                                             ACCCTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATA                 >  SRR4302543.638153/1‑94 (MQ=60)
                                                                               CCTGAAGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATT               <  SRR4302543.5376016/94‑1 (MQ=60)
                                                                                CTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTG              <  SRR4302543.5484060/94‑1 (MQ=60)
                                                                                CTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTG              <  SRR4302543.1335245/94‑1 (MQ=60)
                                                                                CTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTG              >  SRR4302543.5978891/1‑94 (MQ=60)
                                                                                CTGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTG              >  SRR4302543.5978892/1‑94 (MQ=60)
                                                                                 TGATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGA             >  SRR4302543.524978/1‑94 (MQ=60)
                                                                                  GATGTTTGAGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAA            <  SRR4302543.4259737/94‑1 (MQ=60)
                                                                                   ATGTTTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAA           <  SRR4302543.2625184/94‑1 (MQ=60)
                                                                                       TTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCA       >  SRR4302543.3342083/1‑94 (MQ=60)
                                                                                       TTGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCA       <  SRR4302543.3386217/94‑1 (MQ=60)
                                                                                        TGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAG      >  SRR4302543.2024004/1‑94 (MQ=60)
                                                                                        TGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAG      <  SRR4302543.4541223/94‑1 (MQ=60)
                                                                                        TGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAG      <  SRR4302543.6870960/94‑1 (MQ=60)
                                                                                        TGGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAG      >  SRR4302543.3644572/1‑94 (MQ=60)
                                                                                         GGGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGC     <  SRR4302543.3374255/94‑1 (MQ=60)
                                                                                          GGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCG    <  SRR4302543.7747161/94‑1 (MQ=60)
                                                                                          GGGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCG    <  SRR4302543.6797296/94‑1 (MQ=60)
                                                                                           GGTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGA   <  SRR4302543.2079557/94‑1 (MQ=60)
                                                                                            GTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGAT  <  SRR4302543.2138430/94‑1 (MQ=60)
                                                                                            GTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGAT  <  SRR4302543.5105722/94‑1 (MQ=60)
                                                                                            GTCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGAT  >  SRR4302543.6800371/1‑94 (MQ=60)
                                                                                             |                                                                                            
TCGTATTCATGCAATTAATTTTAATCTGATAAGCTCATCTAACGTAAAGAGCCTTTCATCTTTTGGCGAAAGGATTAACCCTGATGTTTGGGGCCAATCAATTGCAATGCGTTCATCATTCCAACATATTCCACAATCGCTTTCAGGATGATAATAGTTTGTAGTTTTATATTGAAATTCAGCGAT  >  NC_000913/2107597‑2107782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑