Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,108,194	T→C	Q283R (CAG→CGG)	rfbA ←	glucose‑1‑phosphate thymidylyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,108,194	0	T	C	99.6%	716.1 / ‑5.1	224	Q283R (CAG→CGG)	rfbA	glucose‑1‑phosphate thymidylyltransferase
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (104/119); total (105/119)
Fisher's exact test for biased strand distribution p-value = 4.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.84e-01

Only 100 of 225 total aligned reads displayed.

AAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGA  >  NC_000913/2108104‑2108283

   tACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCa                                                                                      >  1:2115518/1‑93 (MQ=255)

      tctTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATaa                                                                                   <  2:4515360/93‑1 (MQ=255)

      tctTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATaa                                                                                   >  1:5148429/1‑93 (MQ=255)

      tctTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATaa                                                                                   >  2:5861473/1‑93 (MQ=255)

      tctTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATaa                                                                                   <  2:6991458/93‑1 (MQ=255)

        ttGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAatt                                                                                 <  2:2268064/93‑1 (MQ=255)

          tgCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAattat                                                                               <  1:4398049/92‑1 (MQ=255)

          ggCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAattat                                                                               >  2:3252417/1‑93 (MQ=255)

            cTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTACTTTGAATCCTTCGGCACTTTATAAAGATACCGCCCATACTTATTc                                                                             >  1:2986694/1‑93 (MQ=255)

            cTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTc                                                                             <  1:1029764/93‑1 (MQ=255)

               cAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCttt                                                                          <  2:193836/93‑1 (MQ=255)

               cAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCttt                                                                          >  1:2623057/1‑93 (MQ=255)

               cAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCttt                                                                          >  1:110461/1‑93 (MQ=255)

                aGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTtta                                                                         <  1:2459077/93‑1 (MQ=255)

                 gAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttat                                                                        >  2:3484482/1‑93 (MQ=255)

                  aaTTAGCACATCTTCAATTTCAGTTCTAATCTCATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttatt                                                                       >  1:7901139/1‑93 (MQ=255)

                  aaTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttatt                                                                       <  1:980447/93‑1 (MQ=255)

                  aaTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttatt                                                                       <  2:6090855/93‑1 (MQ=255)

                  aaTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttatt                                                                       >  2:6684296/1‑93 (MQ=255)

                   aTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttatta                                                                      <  1:2258021/93‑1 (MQ=255)

                   aTTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTttatta                                                                      <  1:2846677/93‑1 (MQ=255)

                    ttAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAg                                                                     <  2:453622/93‑1 (MQ=255)

                    ttAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTCATAAAGATACCGCCCATAATTATTCTTTATTAg                                                                     >  1:7616389/1‑93 (MQ=255)

                     tAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGt                                                                    >  1:2220638/1‑93 (MQ=255)

                       gCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTgg                                                                  <  2:6892285/93‑1 (MQ=255)

                       gCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTgg                                                                  <  1:5448619/93‑1 (MQ=255)

                        cacaTCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGt                                                                 >  1:1940211/1‑93 (MQ=255)

                         acaTCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTa                                                                >  2:42302/1‑93 (MQ=255)

                          caTCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTAc                                                               >  2:395829/1‑93 (MQ=255)

                           aTCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACa                                                              <  2:7836448/93‑1 (MQ=255)

                            tCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAg                                                             >  1:7775369/1‑93 (MQ=255)

                              ttCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCt                                                           >  1:1246371/1‑93 (MQ=255)

                               tCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTa                                                          >  2:1726728/1‑93 (MQ=255)

                                 aaTTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAt                                                        >  1:3324806/1‑93 (MQ=255)

                                 aaTTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAt                                                        <  2:2954387/93‑1 (MQ=255)

                                 aaTTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAt                                                        <  1:346254/93‑1 (MQ=255)

                                 aaTTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAt                                                        <  1:1526610/93‑1 (MQ=255)

                                  aTTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAtt                                                       <  1:4293800/93‑1 (MQ=255)

                                     tCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTc                                                    <  1:7751642/93‑1 (MQ=255)

                                      cAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCt                                                   <  2:4621978/93‑1 (MQ=255)

                                      cAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCt                                                   <  1:3100955/93‑1 (MQ=255)

                                      cAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCt                                                   <  1:4069485/93‑1 (MQ=255)

                                       aGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCtt                                                  >  1:5814572/1‑93 (MQ=255)

                                       aGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCtt                                                  <  1:1740558/93‑1 (MQ=255)

                                         ttCTAATCACATTCATTAATTTTAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTAc                                                <  2:2603881/93‑1 (MQ=255)

                                         ttCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTAc                                                >  2:7269636/1‑93 (MQ=255)

                                          tCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACt                                               <  1:5574715/93‑1 (MQ=255)

                                          tCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACt                                               <  1:851868/93‑1 (MQ=255)

                                          tCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACt                                               <  1:3875744/93‑1 (MQ=255)

                                          tCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACt                                               >  1:6253943/1‑93 (MQ=255)

                                            tAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTg                                             >  1:623087/1‑93 (MQ=255)

                                            tAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTg                                             <  1:3209744/93‑1 (MQ=255)

                                            tAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGACCATAATTATTCTTTCTTAGTGGTACAGCTACTTTTCTTAGTTg                                             >  1:623316/1‑93 (MQ=255)

                                             aaTCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGc                                            >  2:5284826/1‑93 (MQ=255)

                                                 acaTTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCaa                                        >  1:2930731/1‑93 (MQ=255)

                                                 acaTTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCaa                                        <  1:36097/93‑1 (MQ=255)

                                                  cattcattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAAc                                       <  2:3865144/93‑1 (MQ=255)

                                                   attcattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACa                                      >  1:1037308/1‑93 (MQ=255)

                                                   attcattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACa                                      <  2:4906760/93‑1 (MQ=255)

                                                   attcattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACa                                      <  1:3407969/93‑1 (MQ=255)

                                                    ttcattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAt                                     <  2:470464/93‑1 (MQ=255)

                                                    ttcattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAt                                     <  1:6530643/93‑1 (MQ=255)

                                                     tcattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATc                                    <  2:2115517/93‑1 (MQ=255)

                                                      cattAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCa                                   >  2:6605549/1‑93 (MQ=255)

                                                       attAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCaa                                  <  2:5683173/93‑1 (MQ=255)

                                                       attAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCaa                                  <  1:6817423/93‑1 (MQ=255)

                                                        ttAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAt                                 >  1:7139774/1‑93 (MQ=255)

                                                        ttAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAt                                 <  2:3777478/93‑1 (MQ=255)

                                                         tAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATa                                <  2:6431490/93‑1 (MQ=255)

                                                           aTTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATaaa                              <  2:3130427/93‑1 (MQ=255)

                                                            tttGAATCCTTCGTCATTTTATAAAGATACCGCCCATCATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATaaaa                             >  1:5923149/1‑93 (MQ=255)

                                                            tttGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATaaaa                             >  2:275938/1‑93 (MQ=255)

                                                                  tCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTa                       <  1:5660023/93‑1 (MQ=255)

                                                                   ccTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAc                      <  2:3994454/93‑1 (MQ=255)

                                                                    cTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACg                     >  2:3662394/1‑93 (MQ=255)

                                                                    cTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACg                     >  1:5384953/1‑93 (MQ=255)

                                                                     ttCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGa                    >  1:3635081/1‑93 (MQ=255)

                                                                     ttCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGa                    >  2:1604197/1‑93 (MQ=255)

                                                                      tCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGaa                   >  1:7104761/1‑93 (MQ=255)

                                                                       cGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGaaa                  <  2:7749539/93‑1 (MQ=255)

                                                                        gTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAt                 >  1:5293295/1‑93 (MQ=255)

                                                                        gTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAt                 <  1:6908041/93‑1 (MQ=255)

                                                                         tCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATg                >  1:4529900/1‑93 (MQ=255)

                                                                         tCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATg                <  2:786786/93‑1 (MQ=255)

                                                                            ttttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCaa             <  1:3265591/93‑1 (MQ=255)

                                                                            ttttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCaa             >  2:5848937/1‑93 (MQ=255)

                                                                            ttttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCaa             <  2:6010832/93‑1 (MQ=255)

                                                                             tttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAt            <  2:5416432/93‑1 (MQ=255)

                                                                             tttATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAt            >  1:1063743/1‑93 (MQ=255)

                                                                                ataAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtctc         <  2:5159046/93‑1 (MQ=255)

                                                                                ataAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAtctc         >  2:5871478/1‑93 (MQ=255)

                                                                                 taAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATctct        <  2:4474450/93‑1 (MQ=255)

                                                                                 taAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATctct        <  2:1184976/93‑1 (MQ=255)

                                                                                  aaaGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCtt       <  2:6483735/93‑1 (MQ=255)

                                                                                  aaaGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCtt       <  1:1649776/93‑1 (MQ=255)

                                                                                    aGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAAACTTTACGAAATGCAATCTCTTca     >  1:4296529/1‑93 (MQ=255)

                                                                                     gATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTcag    <  2:1787198/93‑1 (MQ=255)

                                                                                     gATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTcag    >  1:2422380/1‑93 (MQ=255)

                                                                                      aTACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTcagg   >  1:7443196/1‑93 (MQ=255)

                                                                                       tACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTcagga  >  2:3260907/1‑93 (MQ=255)

AAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGA  >  NC_000913/2108104‑2108283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGAC  >  NC_000913/2108101‑2108284

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                            >  SRR4302543.7885008/1‑94 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                            >  SRR4302543.7774818/1‑94 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                            >  SRR4302543.7723844/1‑94 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                            >  SRR4302543.7418977/1‑94 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                            >  SRR4302543.1108548/1‑94 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                            <  SRR4302543.355546/94‑1 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                            <  SRR4302543.3660738/94‑1 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACC                                                                                            <  SRR4302543.1243748/94‑1 (MQ=60)

 CCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCG                                                                                           <  SRR4302543.3866872/94‑1 (MQ=60)

   AAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCC                                                                                         <  SRR4302543.227491/94‑1 (MQ=60)

     ATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCA                                                                                       >  SRR4302543.2876463/1‑94 (MQ=60)

     ATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCA                                                                                       >  SRR4302543.2134454/1‑94 (MQ=60)

     ATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCA                                                                                       <  SRR4302543.6873668/94‑1 (MQ=60)

     ATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCA                                                                                       <  SRR4302543.6873669/94‑1 (MQ=60)

      TACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCAT                                                                                      >  SRR4302543.4938828/1‑94 (MQ=60)

       ACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATA                                                                                     <  SRR4302543.5536356/94‑1 (MQ=60)

        CTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAA                                                                                    >  SRR4302543.5194968/1‑94 (MQ=60)

         TCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAAT                                                                                   >  SRR4302543.4250279/1‑94 (MQ=60)

         TCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAAT                                                                                   <  SRR4302543.7362459/94‑1 (MQ=60)

          CTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATT                                                                                  <  SRR4302543.1765927/94‑1 (MQ=60)

             TGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATT                                                                               <  SRR4302543.4437919/94‑1 (MQ=60)

             GGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATT                                                                               <  SRR4302543.4437918/94‑1 (MQ=60)

             GGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATT                                                                               >  SRR4302543.293312/1‑94 (MQ=60)

              GCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTACTTTGAATCCTTCGGCACTTTATAAAGATACCGCCCATACTTATTC                                                                              >  SRR4302543.3013816/1‑94 (MQ=60)

              GCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTT                                                                              >  SRR4302543.1116982/1‑94 (MQ=60)

              GCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTC                                                                              >  SRR4302543.5575285/1‑94 (MQ=60)

               CTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCT                                                                             <  SRR4302543.3654328/94‑1 (MQ=60)

               CTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCT                                                                             <  SRR4302543.1038896/94‑1 (MQ=60)

               CTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCT                                                                             <  SRR4302543.1038895/94‑1 (MQ=60)

                TCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTT                                                                            <  SRR4302543.2750553/94‑1 (MQ=60)

                 CCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTT                                                                           >  SRR4302543.111466/1‑94 (MQ=60)

                 CCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTT                                                                           >  SRR4302543.2646811/1‑94 (MQ=60)

                   AGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTAT                                                                         <  SRR4302543.3276599/94‑1 (MQ=60)

                   AGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTAT                                                                         <  SRR4302543.2481250/94‑1 (MQ=60)

                    GAATTAGCACATCTTCAATTTCAGTTCTAATCTCATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATT                                                                        >  SRR4302543.7975409/1‑94 (MQ=60)

                    GAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATT                                                                        >  SRR4302543.1079078/1‑94 (MQ=60)

                     AATTAGCACATCTTCAATTTTAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTA                                                                       >  SRR4302543.7115752/1‑94 (MQ=60)

                     AATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTA                                                                       <  SRR4302543.989102/94‑1 (MQ=60)

                     AATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTA                                                                       <  SRR4302543.989103/94‑1 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                      <  SRR4302543.2872668/94‑1 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                      <  SRR4302543.2278585/94‑1 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                      >  SRR4302543.193113/1‑94 (MQ=60)

                      ATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTCATAAAGATACCGCCCATAATTATTCTTTATTAG                                                                      >  SRR4302543.7688687/1‑94 (MQ=60)

                       TTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGT                                                                     >  SRR4302543.2240674/1‑94 (MQ=60)

                        TAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTG                                                                    <  SRR4302543.5346967/94‑1 (MQ=60)

                         tcCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGG                                                                   <  SRR4302543.5639101/92‑1 (MQ=60)

                          GCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGT                                                                  >  SRR4302543.1957642/1‑94 (MQ=60)

                          GCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGT                                                                  <  SRR4302543.7620589/94‑1 (MQ=60)

                          GCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGT                                                                  <  SRR4302543.5498048/94‑1 (MQ=60)

                           CACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTA                                                                 >  SRR4302543.7310376/1‑94 (MQ=60)

                             CATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACA                                                               <  SRR4302543.1702812/94‑1 (MQ=60)

                              ATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAG                                                              >  SRR4302543.7848699/1‑94 (MQ=60)

                              ATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAG                                                              >  SRR4302543.396770/1‑94 (MQ=60)

                               TCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGC                                                             >  SRR4302543.3021157/1‑94 (MQ=60)

                                CTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCT                                                            >  SRR4302543.1257561/1‑94 (MQ=60)

                                   CAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAAT                                                         >  SRR4302543.3354797/1‑94 (MQ=60)

                                    AATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATT                                                        <  SRR4302543.6312866/94‑1 (MQ=60)

                                    AATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATT                                                        <  SRR4302543.1540310/94‑1 (MQ=60)

                                    AATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATT                                                        <  SRR4302543.349451/94‑1 (MQ=60)

                                     ATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTT                                                       <  SRR4302543.4332832/94‑1 (MQ=60)

                                        TCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCT                                                    <  SRR4302543.2977420/94‑1 (MQ=60)

                                        TCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCT                                                    <  SRR4302543.7824838/94‑1 (MQ=60)

                                         CAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTT                                                   >  SRR4302543.5867448/1‑94 (MQ=60)

                                         CAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTT                                                   <  SRR4302543.3128848/94‑1 (MQ=60)

                                         CAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTT                                                   >  SRR4302543.4333466/1‑94 (MQ=60)

                                         CAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTT                                                   >  SRR4302543.5867449/1‑94 (MQ=60)

                                         CAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTT                                                   >  SRR4302543.7871395/1‑94 (MQ=60)

                                         CAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTT                                                   <  SRR4302543.4105935/94‑1 (MQ=60)

                                          AGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTA                                                  <  SRR4302543.1756087/94‑1 (MQ=60)

                                          AGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTA                                                  <  SRR4302543.6260248/94‑1 (MQ=60)

                                           GTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTAC                                                 <  SRR4302543.7998459/94‑1 (MQ=60)

                                           GTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTAC                                                 <  SRR4302543.1641084/94‑1 (MQ=60)

                                            TTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACT                                                >  SRR4302543.6312938/1‑94 (MQ=60)

                                             TCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTT                                               <  SRR4302543.5625455/94‑1 (MQ=60)

                                             TCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTT                                               <  SRR4302543.859431/94‑1 (MQ=60)

                                             TCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTT                                               <  SRR4302543.4709608/94‑1 (MQ=60)

                                             TCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTT                                               <  SRR4302543.3909960/94‑1 (MQ=60)

                                              CTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTG                                              >  SRR4302543.628794/1‑94 (MQ=60)

                                              CTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTG                                              >  SRR4302543.628793/1‑94 (MQ=60)

                                              CTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTG                                              >  SRR4302543.6391320/1‑94 (MQ=60)

                                              CTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGACCATAATTATTCTTTCTTAGTGGTACAGCTACTTTTCTTAGTTG                                              >  SRR4302543.629023/1‑94 (MQ=60)

                                               TAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGC                                             <  SRR4302543.3238717/94‑1 (MQ=60)

                                                AATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCT                                            <  SRR4302543.3164096/94‑1 (MQ=60)

                                                   CACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAA                                         >  SRR4302543.2957347/1‑94 (MQ=60)

                                                    ACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAAC                                        >  SRR4302543.120255/1‑94 (MQ=60)

                                                    ACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAAC                                        <  SRR4302543.36428/94‑1 (MQ=60)

                                                     CATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACA                                       >  SRR4302543.1046531/1‑94 (MQ=60)

                                                     CATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACA                                       <  SRR4302543.1966680/94‑1 (MQ=60)

                                                     CATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCACAACA                                       >  SRR4302543.7933767/1‑94 (MQ=60)

                                                      ATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAT                                      >  SRR4302543.3339995/1‑94 (MQ=60)

                                                      ATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAT                                      <  SRR4302543.3438481/94‑1 (MQ=60)

                                                      ATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACAT                                      <  SRR4302543.3606829/94‑1 (MQ=60)

                                                       TTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATC                                     <  SRR4302543.6592129/94‑1 (MQ=60)

                                                       TTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATC                                     <  SRR4302543.5812436/94‑1 (MQ=60)

                                                        TCATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCA                                    <  SRR4302543.7819780/94‑1 (MQ=60)

                                                         CATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAA                                   >  SRR4302543.5266058/1‑94 (MQ=60)

                                                          ATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAT                                  >  SRR4302543.7209149/1‑94 (MQ=60)

                                                          ATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAT                                  >  SRR4302543.7209150/1‑94 (MQ=60)

                                                          ATTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAAT                                  <  SRR4302543.6881784/94‑1 (MQ=60)

                                                           TTAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATA                                 <  SRR4302543.6884815/94‑1 (MQ=60)

                                                            TAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAA                                <  SRR4302543.337858/94‑1 (MQ=60)

                                                            TAATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAA                                <  SRR4302543.1499560/94‑1 (MQ=60)

                                                              ATTTGAATCCTTCGTCATTTTATAAAGATACCGCCCATCATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAA                              >  SRR4302543.5977271/1‑94 (MQ=60)

                                                                  GAATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTT                          >  SRR4302543.444969/1‑94 (MQ=60)

                                                                   AATCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTT                         <  SRR4302543.3692984/94‑1 (MQ=60)

                                                                     TCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAC                       <  SRR4302543.5711649/94‑1 (MQ=60)

                                                                     TCCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTAC                       >  SRR4302543.2376464/1‑94 (MQ=60)

                                                                      CCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACG                      >  SRR4302543.5433840/1‑94 (MQ=60)

                                                                      CCTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACG                      >  SRR4302543.4270111/1‑94 (MQ=60)

                                                                       CTTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGA                     >  SRR4302543.3667072/1‑94 (MQ=60)

                                                                        TTCGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAA                    >  SRR4302543.7173774/1‑94 (MQ=60)

                                                                          CGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAAT                  >  SRR4302543.5341092/1‑94 (MQ=60)

                                                                          CGTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACATGCTCTACATCAATAAAACCTTTATGAAAA                  >  SRR4302543.5451587/1‑94 (MQ=60)

                                                                           GTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATG                 >  SRR4302543.4571126/1‑94 (MQ=60)

                                                                           GTCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATG                 <  SRR4302543.6972960/94‑1 (MQ=60)

                                                                            TCATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGC                >  SRR4302543.2319975/1‑94 (MQ=60)

                                                                             CATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCA               >  SRR4302543.6268283/1‑94 (MQ=60)

                                                                              ATTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAA              >  SRR4302543.2446078/1‑94 (MQ=60)

                                                                               TTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGCAATGCGAT             >  SRR4302543.1073297/1‑94 (MQ=60)

                                                                               TTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAT             >  SRR4302543.1073299/1‑94 (MQ=60)

                                                                               TTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAT             <  SRR4302543.2514792/94‑1 (MQ=60)

                                                                               TTTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAAT             <  SRR4302543.3295103/94‑1 (MQ=60)

                                                                                TTTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATC            >  SRR4302543.3266647/1‑94 (MQ=60)

                                                                                 TTATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCT           <  SRR4302543.3525980/94‑1 (MQ=60)

                                                                                  TATAAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTC          >  SRR4302543.2184856/1‑94 (MQ=60)

                                                                                     AAAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTC       <  SRR4302543.1664534/94‑1 (MQ=60)

                                                                                      AAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCA      >  SRR4302543.7845159/1‑94 (MQ=60)

                                                                                      AAGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAAACTTTACGAAATGCAATCTCTTCA      >  SRR4302543.4335581/1‑94 (MQ=60)

                                                                                       AGATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAG     >  SRR4302543.2444249/1‑94 (MQ=60)

                                                                                        GATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGG    >  SRR4302543.7514534/1‑94 (MQ=60)

                                                                                         ATACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGA   <  SRR4302543.3467821/94‑1 (MQ=60)

                                                                                          TACCGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGAC  <  SRR4302543.873660/94‑1 (MQ=60)

ACCAAATACTCTTGGCTCCAGAATTAGCACATCTTCAATTTCAGTTCTAATCACATTCATTAATTTGAATCCTTCGTCATTTTATAAAGATACTGCCCATAATTATTCTTTATTAGTGGTACAGCTAATTTTCTTACTTGCTCAACATCAATAAAACCTTTACGAAATGCAATCTCTTCAGGAC  >  NC_000913/2108101‑2108284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`