Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,116,015 |
A→G |
F138L (TTT→CTT) |
wcaK ← |
putative galactokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,116,015 | 0 | A | G | 100.0%
| 398.8
/ NA
| 126 | F138L (TTT→CTT) | wcaK | putative galactokinase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (71/55); total (71/55) |
Only 100 of 128 total aligned reads displayed.
GGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAACTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGTGA > NC_000913/2115925‑2116104
|
tgTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCt < 2:2238855/92‑1 (MQ=255)
ggTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCt > 1:1241141/1‑93 (MQ=255)
ttAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGc < 2:4035342/93‑1 (MQ=255)
ttAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGc < 2:3512888/93‑1 (MQ=255)
tAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCg < 2:1684298/93‑1 (MQ=255)
aaTTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGc < 1:571387/93‑1 (MQ=255)
aTTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCa < 2:174537/93‑1 (MQ=255)
ttGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCAc > 1:3018077/1‑93 (MQ=255)
gCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGc > 1:4660121/1‑93 (MQ=255)
taaTCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCa > 2:2959565/3‑93 (MQ=255)
tCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCa > 1:837862/1‑93 (MQ=255)
tCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCa < 2:2787423/93‑1 (MQ=255)
tCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATag < 1:2118617/93‑1 (MQ=255)
tCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATag > 1:4505426/1‑93 (MQ=255)
tCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATag > 1:28934/1‑93 (MQ=255)
tCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATag < 2:4530003/93‑1 (MQ=255)
ccTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATaga < 2:645456/93‑1 (MQ=255)
ggAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGAt > 1:2385780/1‑93 (MQ=255)
ggAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGAt < 2:1259204/93‑1 (MQ=255)
ggAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGAt < 1:3939317/93‑1 (MQ=255)
gAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATc > 2:3022181/1‑93 (MQ=255)
aCGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGa < 1:2090811/93‑1 (MQ=255)
aCGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGa < 1:1826585/93‑1 (MQ=255)
cGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGAc < 1:1651506/93‑1 (MQ=255)
cGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGAc < 1:3513384/93‑1 (MQ=255)
gggCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACa > 2:2013533/1‑93 (MQ=255)
gggCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACa > 2:1080213/1‑93 (MQ=255)
gggCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACa > 2:4610384/1‑93 (MQ=255)
ggCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGAGCGACaa > 2:844457/1‑93 (MQ=255)
gCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACaaa > 2:136141/1‑93 (MQ=255)
cAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACaaaaa > 2:687326/1‑93 (MQ=255)
aaCACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACaaaaaa < 2:3834680/93‑1 (MQ=255)
aaCACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACaaaaaa < 1:4115463/93‑1 (MQ=255)
aaCACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAACTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACaaaaaa < 1:2522234/93‑1 (MQ=255)
cacTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACg < 2:3866172/93‑1 (MQ=255)
cTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGAt > 2:799399/1‑93 (MQ=255)
cTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGAt < 2:2802938/93‑1 (MQ=255)
gtgACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCTTGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATcc < 2:742968/93‑1 (MQ=255)
aCCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATccgcc > 2:1179459/1‑93 (MQ=255)
ccAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATccgccg > 1:1306692/1‑93 (MQ=255)
cAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGa > 2:1118203/1‑93 (MQ=255)
tCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCt > 1:1839116/1‑93 (MQ=255)
tCATAAACAGCGACTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCt < 2:1097541/93‑1 (MQ=255)
aTAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTgg > 2:1992999/1‑93 (MQ=255)
aTAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTgg > 2:1882787/1‑93 (MQ=255)
tAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGa < 2:4095104/93‑1 (MQ=255)
tAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGa > 2:4485753/1‑93 (MQ=255)
aCAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATaa < 1:3567840/93‑1 (MQ=255)
cAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAAt < 2:4676846/93‑1 (MQ=255)
aGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATg > 1:4602337/1‑93 (MQ=255)
gCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATgg > 2:843982/1‑93 (MQ=255)
gCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATgg > 2:193767/1‑93 (MQ=255)
gCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATgg > 2:1732905/1‑93 (MQ=255)
gCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATgg < 2:701673/93‑1 (MQ=255)
gCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATgg < 1:886100/93‑1 (MQ=255)
ggCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCTCCGACCTGGATAATGGcg > 1:181484/1‑93 (MQ=255)
ggCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGcg < 1:483571/93‑1 (MQ=255)
ggCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGcg < 1:1950974/93‑1 (MQ=255)
gCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGcgt > 2:4216257/1‑93 (MQ=255)
gCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGcgt > 1:3229701/1‑93 (MQ=255)
cTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGcgtc > 2:3556846/1‑93 (MQ=255)
cTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGcgtc > 1:2117212/1‑93 (MQ=255)
tttttCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGcgtcg > 2:4403932/1‑93 (MQ=255)
tttCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTa > 1:1629805/1‑93 (MQ=255)
tCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAAc < 2:213724/93‑1 (MQ=255)
cGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAAcc < 2:303861/93‑1 (MQ=255)
gCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCt > 2:254239/1‑93 (MQ=255)
gCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCt < 1:966708/93‑1 (MQ=255)
gCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCt < 1:441956/93‑1 (MQ=255)
cATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGa > 2:3866424/1‑93 (MQ=255)
cATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGa > 1:3951374/1‑93 (MQ=255)
cATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGa > 1:2498554/1‑93 (MQ=255)
aTAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAc > 2:2794620/1‑93 (MQ=255)
aTAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAc < 2:363333/93‑1 (MQ=255)
aTAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAc < 2:830402/93‑1 (MQ=255)
aTAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAc < 2:2365751/93‑1 (MQ=255)
aTAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAc < 2:4637748/93‑1 (MQ=255)
aTAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAc > 2:1561660/1‑93 (MQ=255)
tAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAca < 2:3268234/93‑1 (MQ=255)
tAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAca > 1:1620202/1‑93 (MQ=255)
aaCGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAcagc > 1:1557743/1‑93 (MQ=255)
aCGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAcagca > 1:3412436/1‑93 (MQ=255)
aCGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGAcagca > 1:3184927/1‑93 (MQ=255)
gTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAgg < 2:1387587/93‑1 (MQ=255)
tGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGgc > 1:1004278/1‑93 (MQ=255)
tGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGgc > 1:468081/1‑93 (MQ=255)
aaaGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCa > 1:2877355/1‑93 (MQ=255)
aaaGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCa > 2:3835817/1‑93 (MQ=255)
aaGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCAc > 2:790470/1‑93 (MQ=255)
gTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGa > 2:4045579/1‑93 (MQ=255)
gTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGa > 2:2557659/1‑93 (MQ=255)
gCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAg > 2:4050688/1‑93 (MQ=255)
gCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAg > 2:214960/1‑93 (MQ=255)
cATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGt > 2:758602/1‑93 (MQ=255)
aTGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTc < 1:2944442/93‑1 (MQ=255)
tGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCg > 1:3712285/1‑93 (MQ=255)
gTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCgg > 1:1259219/1‑93 (MQ=255)
gTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCgg < 2:3055627/93‑1 (MQ=255)
ttCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGt > 1:3707638/1‑93 (MQ=255)
cAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGTGa < 1:4568312/93‑1 (MQ=255)
|
GGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAACTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGTGA > NC_000913/2115925‑2116104
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GTTGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAACTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGTGAAT > NC_000913/2115922‑2116106
|
GTTGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAG < SRR4302535.1336786/94‑1 (MQ=60)
GTTGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAG < SRR4302535.3670487/94‑1 (MQ=60)
GTTGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAG < SRR4302535.2470609/94‑1 (MQ=60)
TTGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGC > SRR4302535.526580/1‑94 (MQ=60)
TTGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGC < SRR4302535.2930867/94‑1 (MQ=60)
TTGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGC < SRR4302535.1944184/94‑1 (MQ=60)
TGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCT > SRR4302535.1250002/1‑94 (MQ=60)
TGGTTAAATTGCTCATCCTGGAACGGCCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCT < SRR4302535.4048992/94‑1 (MQ=60)
AATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCA < SRR4302535.575397/94‑1 (MQ=60)
AATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCA > SRR4302535.2876798/1‑94 (MQ=60)
ATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCAC > SRR4302535.3039219/1‑94 (MQ=60)
TGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGC > SRR4302535.4691641/1‑94 (MQ=60)
CTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCA > SRR4302535.843745/1‑94 (MQ=60)
TCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCAT > SRR4302535.1808497/1‑94 (MQ=60)
ATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAG > SRR4302535.4536357/1‑94 (MQ=60)
ATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAG > SRR4302535.29160/1‑94 (MQ=60)
TCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGA < SRR4302535.2133900/94‑1 (MQ=60)
CCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAG > SRR4302535.4688832/1‑94 (MQ=60)
TGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGAT > SRR4302535.2402925/1‑94 (MQ=60)
GGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATC < SRR4302535.3966201/94‑1 (MQ=60)
ACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGAC < SRR4302535.1839771/94‑1 (MQ=60)
ACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGAC < SRR4302535.2105878/94‑1 (MQ=60)
ACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGAC < SRR4302535.4493841/94‑1 (MQ=60)
CGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACA < SRR4302535.1663448/94‑1 (MQ=60)
CGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACA < SRR4302535.3537797/94‑1 (MQ=60)
GGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAA < SRR4302535.2344180/94‑1 (MQ=60)
AACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAAC < SRR4302535.4143634/94‑1 (MQ=60)
AACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAACTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAAC < SRR4302535.2540410/94‑1 (MQ=60)
ACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACG < SRR4302535.1389476/94‑1 (MQ=60)
CTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATC > SRR4302535.3157742/1‑94 (MQ=60)
ACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCG > SRR4302535.1316023/1‑94 (MQ=60)
AATCATAAAGCGCGGCTTCTGCGCCATAACCGTGCAAGTTACATGTGCAAGCTTCGTCACGCCATAGAGATCCACAAAAAACGATCCGCCGACC < SRR4302535.1655376/94‑1 (MQ=19)
AATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACC > SRR4302535.834901/1‑94 (MQ=60)
ATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCT > SRR4302535.1852382/1‑94 (MQ=60)
ACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAAT < SRR4302535.3592579/94‑1 (MQ=60)
ACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAAT < SRR4302535.3476471/94‑1 (MQ=60)
CAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATG > SRR4302535.4633635/1‑94 (MQ=60)
GCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGC < SRR4302535.892372/94‑1 (MQ=60)
CGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCTCCGACCTGGATAATGGCG > SRR4302535.182742/1‑94 (MQ=60)
GGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGT < SRR4302535.1965017/94‑1 (MQ=60)
GGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGT > SRR4302535.3252087/1‑94 (MQ=60)
GGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGT < SRR4302535.486962/94‑1 (MQ=60)
GCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTC > SRR4302535.2132485/1‑94 (MQ=60)
TTTTCGCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTA > SRR4302535.1641575/1‑94 (MQ=60)
GCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTG < SRR4302535.973577/94‑1 (MQ=60)
GCCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTG < SRR4302535.445051/94‑1 (MQ=60)
CCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGA > SRR4302535.3889484/1‑94 (MQ=60)
CCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGA > SRR4302535.3978352/1‑94 (MQ=60)
CCATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGA > SRR4302535.2516579/1‑94 (MQ=60)
ATAAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACA > SRR4302535.1631889/1‑94 (MQ=60)
AAACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGC > SRR4302535.1568974/1‑94 (MQ=60)
AACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCA > SRR4302535.3436181/1‑94 (MQ=60)
AACGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCA > SRR4302535.3206944/1‑94 (MQ=60)
CGTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGG > SRR4302535.1956386/1‑94 (MQ=60)
GTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGC > SRR4302535.1011408/1‑94 (MQ=60)
GTGCAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGC > SRR4302535.471355/1‑94 (MQ=60)
CAAAGTGCATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCA > SRR4302535.2897732/1‑94 (MQ=60)
ATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCG < SRR4302535.2965139/94‑1 (MQ=60)
ATGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCG > SRR4302535.3738002/1‑94 (MQ=60)
TGTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGG > SRR4302535.1268231/1‑94 (MQ=60)
GTTCAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGT > SRR4302535.3733312/1‑94 (MQ=60)
CAAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGTGAA < SRR4302535.4599469/94‑1 (MQ=60)
AAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGTGAAT > SRR4302535.4325448/1‑94 (MQ=60)
AAGCTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGTGAAT < SRR4302535.2183063/94‑1 (MQ=60)
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GTTGGTTAAATTGCTCATCCTGGAACGGGCCAACACTGTGACCAATCATAAACAGCGGCTTTTTCGCCATAAACGTGCAAAGTGCATGTTCAAACTGCGGCACGCCATAGAGATCGACAAAAAACGATCCGCCGACCTGGATAATGGCGTCGTAACCTGACAGCAGGCGCACGAAGTCGGTGAAT > NC_000913/2115922‑2116106
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
