Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,161,130 |
T→C |
V78A (GTC→GCC) |
baeS → |
BaeS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,161,130 | 0 | T | C | 100.0%
| 453.9
/ NA
| 144 | V78A (GTC→GCC) | baeS | BaeS |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (67/77); total (67/77) |
Only 100 of 148 total aligned reads displayed.
AACAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTC > NC_000913/2161040‑2161218
|
aCAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCtt < 2:2248996/93‑1 (MQ=255)
aCAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCtt > 2:4073533/1‑93 (MQ=255)
gCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCa > 2:1234087/1‑93 (MQ=255)
gCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCa > 2:424282/1‑93 (MQ=255)
gCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCa < 2:2802234/93‑1 (MQ=255)
gCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCa > 1:1561142/1‑93 (MQ=255)
gCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCa > 1:1673409/1‑93 (MQ=255)
gATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGa > 1:1106577/1‑93 (MQ=255)
gATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGa < 2:3861267/93‑1 (MQ=255)
gATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGa < 2:4259888/93‑1 (MQ=255)
tACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATcc > 2:3856774/1‑93 (MQ=255)
tACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTATCAGATcc < 2:4575517/93‑1 (MQ=255)
aCAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCt < 2:4637713/93‑1 (MQ=255)
aCAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCt < 1:3612788/93‑1 (MQ=255)
aCAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCt > 1:485003/1‑93 (MQ=255)
cAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTg < 2:1838910/93‑1 (MQ=255)
cAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTg > 2:1974006/1‑93 (MQ=255)
aaCTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGc > 1:520280/1‑93 (MQ=255)
aaCTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGc > 2:3526007/1‑93 (MQ=255)
aCTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCg > 1:4507826/1‑93 (MQ=255)
cTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGt < 1:3846395/93‑1 (MQ=255)
tGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGtt > 2:2681564/1‑93 (MQ=255)
gTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTc < 2:117600/93‑1 (MQ=255)
ttAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCa < 1:4057870/93‑1 (MQ=255)
ttAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCa < 2:1267740/93‑1 (MQ=255)
ttAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCa > 2:3340289/1‑93 (MQ=255)
tAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCAt > 2:2968379/1‑93 (MQ=255)
tAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGCTCAt > 1:1989181/1‑93 (MQ=255)
aaGTGATGCGCTTGGCGAGCAGTATGCTCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCAtt < 2:4658024/93‑1 (MQ=255)
gATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGaa > 2:3124946/1‑93 (MQ=255)
gATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGaa > 1:980776/1‑93 (MQ=255)
aTGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAac > 1:1183128/1‑93 (MQ=255)
aTGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAac < 1:3793787/93‑1 (MQ=255)
tGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAaca < 2:1647491/93‑1 (MQ=255)
tGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAaca < 1:2030027/93‑1 (MQ=255)
cgcTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACg < 2:3029348/93‑1 (MQ=255)
gcTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGa > 1:2403160/1‑93 (MQ=255)
gcTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGa > 2:3438452/1‑93 (MQ=255)
cTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGAt < 1:2374685/93‑1 (MQ=255)
ttGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATa > 2:2295746/1‑93 (MQ=255)
ttGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATa > 2:3324843/1‑93 (MQ=255)
tGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATaa < 1:163906/93‑1 (MQ=255)
tGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATaa < 1:1270492/93‑1 (MQ=255)
cGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTc < 1:2417958/93‑1 (MQ=255)
gAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCg < 1:372167/93‑1 (MQ=255)
gAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCg < 1:638538/93‑1 (MQ=255)
gAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCg > 1:4134669/1‑93 (MQ=255)
aGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCgg < 1:93986/93‑1 (MQ=255)
gCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGa < 2:1792076/93‑1 (MQ=255)
gCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGa < 1:1490677/93‑1 (MQ=255)
gCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGa < 1:2149481/93‑1 (MQ=255)
gCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAACTCGGa < 2:2328527/93‑1 (MQ=255)
tATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGAt < 2:521181/93‑1 (MQ=255)
tATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGAt > 1:3225870/1‑93 (MQ=255)
atacgcAGCATGGCAACTGGTGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATa < 2:614846/90‑1 (MQ=255)
aTGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATa < 1:825098/93‑1 (MQ=255)
tGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATaa < 2:2011835/93‑1 (MQ=255)
tGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATaa < 1:4210118/93‑1 (MQ=255)
gcagcaTGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcc < 1:3899654/93‑1 (MQ=255)
gcagcaTGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcc < 1:1367209/93‑1 (MQ=255)
agcaTGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcccg > 2:4178601/1‑93 (MQ=255)
agcaTGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcccg < 1:1070563/93‑1 (MQ=255)
agcaTGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcccg > 1:2165299/1‑93 (MQ=255)
gcaTGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcccgg < 2:3309836/93‑1 (MQ=255)
caTGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcccggc > 1:1715723/1‑93 (MQ=255)
aTGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGACCACGGTAATTCGGAAGACAAAtccggcc > 2:4533578/1‑93 (MQ=255)
tGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATACAcccggccc > 1:1047499/1‑93 (MQ=255)
tGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcccggccc < 1:1168069/93‑1 (MQ=255)
tGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAAcccggccc < 1:580770/93‑1 (MQ=255)
cTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTAt < 1:4542171/93‑1 (MQ=255)
tGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATg > 2:1296297/1‑93 (MQ=255)
ggCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGc < 2:776695/93‑1 (MQ=255)
gcgcTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGcc < 1:1247577/93‑1 (MQ=255)
cgcTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCa < 1:2852265/93‑1 (MQ=255)
cgcTTCCTGCGCAACAATGACCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCa < 2:3781329/93‑1 (MQ=255)
gcTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCAc > 1:2880679/1‑93 (MQ=255)
cTTCCGGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCAcc < 1:2719825/93‑1 (MQ=255)
tCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGc > 2:4190776/1‑93 (MQ=255)
tGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACg > 2:669815/1‑93 (MQ=255)
cgcAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGc < 2:2750177/93‑1 (MQ=255)
caacaaTGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTg < 1:3662313/93‑1 (MQ=255)
aacaaTGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTgg < 2:2246618/93‑1 (MQ=255)
acaaTGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGc > 1:2937093/1‑93 (MQ=255)
aaTGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGt > 1:813729/1‑93 (MQ=255)
aTGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTa > 2:3447109/1‑93 (MQ=255)
aTGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTa > 1:2679645/1‑93 (MQ=255)
tGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTAc > 1:188335/1‑93 (MQ=255)
tGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTAc > 1:608577/1‑93 (MQ=255)
gATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTAcc < 1:2348063/93‑1 (MQ=255)
tCGCTTTGCCTTTCAGATCTTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGGATGCCACCGCACGGCTGGCGTACCCa > 2:4571560/1‑93 (MQ=255)
tCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCa > 1:2021144/1‑93 (MQ=255)
tCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCa > 2:2684348/1‑93 (MQ=255)
cGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAg > 1:806662/1‑93 (MQ=255)
gCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTTGGGTACACAGt > 2:2426873/1‑93 (MQ=255)
gCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGt > 1:648924/1‑93 (MQ=255)
cTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGtt < 1:826905/93‑1 (MQ=255)
cTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGtt > 2:3093267/1‑93 (MQ=255)
tttGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAACCCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTc < 2:25871/93‑1 (MQ=255)
tttGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTc < 2:4352580/93‑1 (MQ=255)
tttGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTc < 2:4053183/93‑1 (MQ=255)
|
AACAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTC > NC_000913/2161040‑2161218
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAACAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGT > NC_000913/2161039‑2161223
|
GAACAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCT < SRR4302535.1091821/94‑1 (MQ=60)
AACAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTT < SRR4302535.2026789/94‑1 (MQ=60)
ACAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTT > SRR4302535.822234/1‑94 (MQ=60)
AGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCA > SRR4302535.1685522/1‑94 (MQ=60)
AGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCA > SRR4302535.1572390/1‑94 (MQ=60)
CGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGA > SRR4302535.1114481/1‑94 (MQ=60)
GATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGAT < SRR4302535.702371/94‑1 (MQ=60)
ATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATC < SRR4302535.3874950/94‑1 (MQ=60)
ATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATC > SRR4302535.2864288/1‑94 (MQ=60)
TACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCT > SRR4302535.3657717/1‑94 (MQ=60)
TACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCT < SRR4302535.1676576/94‑1 (MQ=60)
TACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCT > SRR4302535.488403/1‑94 (MQ=60)
ACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTG < SRR4302535.3637840/94‑1 (MQ=60)
CAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGC > SRR4302535.523917/1‑94 (MQ=60)
AACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCG > SRR4302535.4538761/1‑94 (MQ=60)
CTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTT < SRR4302535.3872877/94‑1 (MQ=60)
TTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCAT < SRR4302535.2457338/94‑1 (MQ=60)
TTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCAT < SRR4302535.4085647/94‑1 (MQ=60)
TTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGCTCAT > SRR4302535.2003505/1‑94 (MQ=60)
TTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTAAGATCCTGCGTTCAT < SRR4302535.4675094/94‑1 (MQ=60)
TAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATT < SRR4302535.2114216/94‑1 (MQ=60)
TAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATT < SRR4302535.846125/94‑1 (MQ=60)
TGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAA > SRR4302535.987744/1‑94 (MQ=60)
GATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAAC > SRR4302535.1191577/1‑94 (MQ=60)
GATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAAC < SRR4302535.378192/94‑1 (MQ=60)
ATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACA < SRR4302535.3819943/94‑1 (MQ=60)
TGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACAC < SRR4302535.2044658/94‑1 (MQ=60)
CGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGA > SRR4302535.2420447/1‑94 (MQ=60)
CTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATA < SRR4302535.570928/94‑1 (MQ=60)
CTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATA > SRR4302535.2340204/1‑94 (MQ=60)
CTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATA < SRR4302535.2391743/94‑1 (MQ=60)
TGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAAT < SRR4302535.1279569/94‑1 (MQ=60)
TGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAAT < SRR4302535.1346735/94‑1 (MQ=60)
TGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAAT < SRR4302535.165051/94‑1 (MQ=60)
CGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCG < SRR4302535.2435363/94‑1 (MQ=60)
CGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCG > SRR4302535.4162982/1‑94 (MQ=60)
GAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGG < SRR4302535.374743/94‑1 (MQ=60)
GAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGG < SRR4302535.643000/94‑1 (MQ=60)
AGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGA < SRR4302535.94653/94‑1 (MQ=60)
GCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAA < SRR4302535.1501381/94‑1 (MQ=60)
GCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAA < SRR4302535.2164940/94‑1 (MQ=60)
AGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGA > SRR4302535.4419085/1‑94 (MQ=60)
GTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGAT < SRR4302535.4102769/94‑1 (MQ=60)
GTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGAT > SRR4302535.3248234/1‑94 (MQ=60)
ATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAA < SRR4302535.830881/94‑1 (MQ=60)
TGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAA < SRR4302535.4238937/94‑1 (MQ=60)
GCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCC < SRR4302535.3926368/94‑1 (MQ=60)
GCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCC < SRR4302535.1376982/94‑1 (MQ=60)
CAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCG > SRR4302535.2180825/1‑94 (MQ=60)
AGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGG < SRR4302535.1078175/94‑1 (MQ=60)
GCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGC > SRR4302535.1728135/1‑94 (MQ=60)
ATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATACACCCGGCCC > SRR4302535.1054927/1‑94 (MQ=60)
TGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCG < SRR4302535.1176408/94‑1 (MQ=60)
TGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCG < SRR4302535.584852/94‑1 (MQ=60)
GGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGG > SRR4302535.240804/1‑94 (MQ=60)
CTGGCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATG < SRR4302535.4573240/94‑1 (MQ=60)
GCGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCA < SRR4302535.1256477/94‑1 (MQ=60)
CGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCAC > SRR4302535.2901070/1‑94 (MQ=60)
CGCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCAC < SRR4302535.2872472/94‑1 (MQ=60)
GCTTCCTGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACC > SRR4302535.3050364/1‑94 (MQ=60)
CTTCCGGCGCAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCG < SRR4302535.2739255/94‑1 (MQ=60)
CAACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGG < SRR4302535.3687672/94‑1 (MQ=60)
AACAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGC > SRR4302535.2957757/1‑94 (MQ=60)
CAATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGT > SRR4302535.819435/1‑94 (MQ=60)
AATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTA < SRR4302535.1174935/94‑1 (MQ=60)
AATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTA > SRR4302535.2698814/1‑94 (MQ=60)
ATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTAC > SRR4302535.189638/1‑94 (MQ=60)
ATGATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTAC > SRR4302535.612823/1‑94 (MQ=60)
GATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCC < SRR4302535.2364897/94‑1 (MQ=60)
ATCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCA > SRR4302535.2035714/1‑94 (MQ=60)
TCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAG < SRR4302535.1541572/94‑1 (MQ=60)
TCGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAG > SRR4302535.812320/1‑94 (MQ=60)
CGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGT > SRR4302535.653447/1‑94 (MQ=60)
CGCTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGT > SRR4302535.1225739/1‑94 (MQ=60)
CTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTC > SRR4302535.639081/1‑94 (MQ=60)
CTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTC > SRR4302535.1896349/1‑94 (MQ=60)
CTTTGCCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTC < SRR4302535.832694/94‑1 (MQ=60)
CCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGT < SRR4302535.4625887/94‑1 (MQ=60)
CCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGG > SRR4302535.4010181/1‑94 (MQ=60)
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GAACAGCGATTACAACTGTTAAGTGATGCGCTTGGCGAGCAGTATGCGCAGCATGGCAACTGGCGCTTCCTGCGCAACAATGATCGCTTTGTCTTTCAGATCCTGCGTTCATTTGAACACGATAATTCGGAAGATAAACCCGGCCCGGGTATGCCACCGCACGGCTGGCGTACCCAGTTCTGGGT > NC_000913/2161039‑2161223
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
